genome.fa.s223.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  185  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31732733--31732779	24	2.0	24	87	8	69	68	4	6	21	1.30
31732712--31732830	40	3.0	40	76	4	116	69	1	5	22	1.19
31732757--31732867	16	6.8	17	75	12	83	72	0	5	21	1.04
31732757--31732836	16	5.0	16	79	11	85	73	0	6	20	1.04
31732792--31732867	6	12.0	6	75	12	55	75	0	2	22	0.93
31733059--31733108	17	2.9	16	88	11	73	0	0	10	90	0.47
31733059--31733109	18	2.9	18	88	11	79	0	0	9	90	0.46
31733061--31733111	27	1.9	26	92	4	84	0	0	9	90	0.46
31733059--31733111	1	53.0	1	80	0	61	0	0	9	90	0.45
31733137--31733439	42	7.2	42	78	10	142	35	22	15	27	1.94
31733137--31733240	43	2.4	43	87	7	142	33	23	18	25	1.96
31733242--31733475	84	2.8	85	81	6	278	37	20	14	26	1.92
31733241--31733463	42	5.3	41	78	9	225	36	21	14	27	1.92
31735354--31735396	21	2.2	19	91	8	68	6	16	0	76	0.99
31738605--31738914	153	2.0	153	100	0	620	41	14	14	29	1.85
31739443--31739656	58	3.7	57	82	6	254	37	11	6	44	1.66
31739673--31739761	5	16.8	5	75	19	67	78	0	5	15	0.93
31739673--31739761	17	4.9	16	75	21	70	78	0	5	15	0.93
31739673--31739761	6	14.5	6	74	16	76	78	0	5	15	0.93
31739673--31739761	23	4.0	22	83	14	103	78	0	5	15	0.93
31753395--31753420	2	13.0	2	100	0	52	50	0	0	50	1.00
31756906--31756938	16	2.1	16	88	11	50	66	0	3	30	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31757449--31757508	29	2.1	29	96	0	111	53	6	15	25	1.65
31765558--31765600	18	2.4	18	88	11	63	67	0	2	30	1.03
31767299--31767336	19	2.1	19	90	5	60	34	0	5	60	1.19
31774963--31775007	22	2.0	23	86	8	65	53	6	0	40	1.27
31776623--31776662	17	2.4	17	86	0	62	55	0	0	45	0.99
31776663--31776704	14	3.0	14	83	10	50	45	0	0	54	0.99
31776665--31776694	15	2.1	15	93	6	53	50	0	0	50	1.00
31783811--31783837	2	13.5	2	100	0	54	48	0	0	51	1.00
31800928--31801048	60	2.0	60	93	0	206	12	15	28	42	1.83
31804578--31804613	18	2.0	18	88	0	54	8	2	8	80	0.99
31804812--31804880	15	4.1	16	70	17	59	53	0	2	43	1.15
31804832--31805309	19	26.0	19	67	20	109	45	1	1	51	1.20
31804953--31805062	29	3.5	33	75	17	103	45	3	0	50	1.19
31804914--31805350	70	6.2	69	73	18	291	44	1	1	52	1.18
31805024--31805386	27	13.3	27	69	22	151	46	1	1	51	1.18
31804910--31805366	55	8.4	55	73	18	291	45	1	1	52	1.18
31804987--31805366	112	3.4	109	82	8	402	45	1	1	52	1.17
31805083--31805404	11	29.4	11	67	21	108	47	0	1	50	1.15
31805332--31805411	13	6.3	13	67	25	55	57	2	0	40	1.12
31805320--31805413	16	5.9	16	73	18	63	57	2	0	40	1.11
31805319--31805415	49	1.9	51	87	4	144	56	2	0	41	1.11
31805529--31805583	15	3.6	15	76	16	51	69	7	0	23	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31806142--31806178	18	2.0	19	89	5	58	21	0	0	78	0.75
31806142--31806172	13	2.5	12	94	5	53	19	0	0	80	0.71
31806178--31806206	11	2.7	11	94	5	51	37	17	0	44	1.49
31813200--31813241	21	2.0	21	95	0	75	45	7	9	38	1.64
31813399--31813459	32	1.9	32	83	6	79	36	4	8	50	1.54
31814037--31814071	14	2.4	15	95	4	63	42	0	2	54	1.15
31814340--31814397	21	2.6	22	75	8	64	53	1	1	43	1.21
31814370--31814408	16	2.5	16	83	4	53	61	0	0	38	0.96
31814911--31814971	20	3.3	20	80	15	78	34	0	0	65	0.93
31816643--31816827	92	2.0	90	81	6	212	47	4	2	46	1.34
31817816--31817859	23	1.9	23	95	0	79	29	2	9	59	1.41
31820340--31820378	13	3.2	13	82	14	55	64	0	0	35	0.94
31820340--31820385	24	1.9	24	81	0	56	67	0	0	32	0.91
31821649--31821685	18	2.0	20	89	10	60	54	0	0	45	1.00
31824637--31824670	2	17.0	2	93	0	59	50	2	0	47	1.16
31825759--31825795	4	9.2	4	100	0	74	72	0	0	27	0.84
31832627--31832651	1	25.0	1	100	0	50	0	0	0	100	0.00
31833065--31833102	11	3.5	11	82	13	51	63	0	0	36	0.95
31833067--31833120	23	2.3	24	81	9	67	61	0	0	38	0.96
31833089--31833163	37	2.0	40	82	17	97	54	2	0	42	1.14
31834770--31834803	2	17.0	2	100	0	68	50	0	0	50	1.00
31836967--31837090	64	1.9	65	98	1	241	18	11	9	60	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31846272--31846357	41	2.1	41	82	0	100	39	15	13	31	1.86
31846862--31846886	12	2.1	12	100	0	50	56	0	0	44	0.99
31851498--31851532	16	2.4	14	90	9	52	45	2	2	48	1.32
31855801--31855842	2	21.0	2	100	0	84	50	0	0	50	1.00
31860398--31860445	23	2.1	23	92	0	78	47	8	6	37	1.59
31872455--31872539	33	2.9	27	69	24	73	56	12	25	4	1.56
31885170--31885252	42	2.0	42	85	0	112	16	9	21	51	1.73
31885174--31885265	42	2.2	42	80	0	103	19	11	18	50	1.78
31885291--31885606	42	7.1	42	72	13	166	24	10	12	52	1.71
31885309--31885586	93	3.0	93	82	2	335	25	11	11	51	1.71
31898441--31898478	20	2.0	20	85	15	53	39	7	2	50	1.46
31912667--31912692	3	8.7	3	100	0	52	65	0	0	34	0.93
31912823--31912863	22	1.9	22	85	5	57	51	17	0	31	1.46
31913664--31913695	2	16.0	2	100	0	64	50	0	0	50	1.00
31920778--31920812	18	1.9	19	88	11	56	68	2	0	28	1.04
31920770--31920810	20	2.0	21	86	13	59	68	2	0	29	1.03
31920781--31921216	144	3.0	145	89	1	671	45	14	6	33	1.71
31922640--31923381	375	2.0	375	89	0	1126	32	13	18	35	1.90
31933228--31933487	42	6.2	42	82	4	292	23	10	15	51	1.73
31933222--31933487	84	3.2	84	83	3	331	24	9	14	51	1.72
31933244--31933484	126	1.9	125	85	2	331	24	9	14	51	1.73
31934179--31934234	18	3.3	18	66	19	57	55	8	8	26	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31938649--31938673	12	2.1	12	100	0	50	40	0	28	32	1.57
31938865--31938958	42	2.2	42	78	0	107	20	7	15	56	1.63
31939653--31939725	32	2.3	32	85	0	101	58	8	5	27	1.49
31943612--31943649	18	2.1	19	85	14	53	65	5	0	28	1.14
31954479--31954518	20	1.9	22	85	10	57	60	0	0	40	0.97
31956107--31956154	7	7.6	7	81	13	52	43	2	0	54	1.12
31956105--31956159	12	4.4	12	76	15	58	45	1	0	52	1.11
31956121--31956174	23	2.3	23	81	6	65	42	1	0	55	1.10
31956107--31956176	6	10.7	6	76	21	52	44	2	0	52	1.15
31959101--31959143	21	2.0	21	83	16	54	13	9	9	67	1.42
31965500--31965531	15	2.1	15	100	0	64	56	12	18	12	1.67
31967471--31967514	19	2.2	20	88	11	65	34	0	0	65	0.93
31967479--31967516	10	3.9	10	82	6	51	34	0	0	65	0.93
31980680--31980712	17	1.9	17	93	0	57	36	6	0	57	1.23
31981518--31981550	15	2.2	15	100	0	66	63	6	0	30	1.18
31981731--31981768	12	3.1	12	85	14	51	44	2	0	52	1.14
31998025--31998062	20	1.9	20	88	0	58	47	13	21	18	1.82
32004011--32004102	30	3.0	30	78	13	91	61	1	0	36	1.03
32004025--32004101	40	1.9	41	83	2	102	62	1	0	36	1.04
32004111--32004180	31	2.2	31	84	2	86	52	0	1	45	1.09
32011851--32012145	149	2.0	149	95	1	538	28	18	30	22	1.97
32015222--32015256	17	2.1	17	88	0	52	57	2	2	37	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32015356--32015389	7	4.9	7	100	0	68	29	0	55	14	1.40
32018332--32018363	16	2.1	15	94	5	55	46	12	6	34	1.67
32020852--32020890	14	2.9	14	84	3	53	51	0	10	38	1.36
32021000--32021061	26	2.4	25	85	12	90	48	0	3	48	1.17
32021036--32021075	15	2.6	16	84	4	55	47	0	2	50	1.14
32021086--32021126	13	3.1	13	89	3	55	48	0	2	48	1.14
32021102--32021145	14	3.1	14	86	3	52	61	2	0	36	1.09
32021165--32021235	10	6.7	10	73	20	56	46	0	2	50	1.16
32021159--32021235	18	4.3	19	75	18	67	45	0	2	51	1.14
32021162--32021260	44	2.3	43	83	16	125	45	0	3	51	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190