genome.fa.s223.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  187  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32274248--32274284	16	2.3	16	85	0	56	86	2	0	10	0.67
32275578--32275697	54	2.2	56	86	7	165	60	7	6	25	1.48
32277704--32277778	37	2.0	37	97	0	141	37	5	8	49	1.55
32277818--32277868	16	3.1	16	73	15	59	45	7	9	37	1.67
32279664--32279710	24	2.0	24	83	4	60	74	10	8	6	1.22
32281029--32281055	2	13.5	2	100	0	54	48	0	0	51	1.00
32283855--32283880	2	13.0	2	100	0	52	50	0	0	50	1.00
32286908--32287582	359	1.9	358	84	5	927	43	7	6	42	1.58
32289858--32289882	2	12.5	2	100	0	50	52	0	0	48	1.00
32292049--32292084	15	2.3	16	90	4	56	88	0	8	2	0.59
32293428--32293564	69	2.0	69	94	2	240	36	29	13	20	1.91
32296034--32296060	2	13.5	2	100	0	54	48	0	0	51	1.00
32296740--32296765	2	13.0	2	100	0	52	50	0	0	50	1.00
32297560--32297713	66	2.4	65	81	7	179	42	7	7	42	1.61
32297560--32297713	65	2.4	64	80	8	177	42	7	7	42	1.61
32297673--32298016	180	1.9	177	84	5	451	39	7	11	41	1.69
32298151--32298371	122	1.8	122	83	6	295	43	6	8	41	1.61
32298151--32298405	122	2.1	122	81	5	291	41	6	8	43	1.60
32314340--32314365	2	13.0	2	100	0	52	50	0	0	50	1.00
32317858--32317890	6	5.3	6	96	3	57	0	36	15	48	1.45
32318768--32318800	2	16.5	2	100	0	66	51	0	0	48	1.00
32324292--32324353	25	2.5	26	78	21	71	50	1	0	48	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32324416--32324447	16	2.0	16	93	0	55	21	0	0	78	0.76
32332737--32332793	28	2.0	28	100	0	114	28	17	15	38	1.91
32334133--32334163	4	7.8	4	100	0	62	0	25	0	74	0.82
32337901--32337925	2	12.5	2	100	0	50	48	0	0	52	1.00
32340281--32340323	2	22.0	2	95	4	79	48	0	0	51	1.00
32342547--32342585	3	13.0	3	100	0	78	66	0	0	33	0.92
32349671--32349723	2	26.5	2	92	0	88	49	3	0	47	1.19
32363016--32363050	15	2.3	15	90	0	52	34	2	17	45	1.63
32366025--32366079	21	2.7	21	91	2	85	34	9	21	34	1.85
32366483--32366536	28	2.0	28	88	3	83	33	5	12	48	1.65
32366507--32366587	28	2.8	29	75	9	85	34	4	14	45	1.67
32368136--32368171	2	18.0	2	100	0	72	50	0	0	50	1.00
32377642--32377678	12	3.2	12	92	3	58	59	0	13	27	1.35
32378128--32378160	2	17.0	2	93	6	59	51	0	0	48	1.00
32379503--32379542	3	13.7	3	94	5	73	65	0	0	35	0.93
32379503--32379542	20	2.0	20	95	5	71	65	0	0	35	0.93
32391001--32391030	2	15.0	2	100	0	60	50	0	0	50	1.00
32398145--32398171	5	5.4	5	100	0	54	37	0	0	62	0.95
32401563--32401592	2	15.0	2	92	0	51	50	3	0	46	1.18
32406827--32406870	22	2.0	22	90	0	70	34	11	13	40	1.81
32407019--32407060	22	1.9	22	85	9	59	35	9	9	45	1.69
32407154--32407346	100	1.9	101	89	3	300	24	15	11	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32417169--32417352	90	2.0	90	94	0	323	27	20	20	32	1.97
32417369--32417437	30	2.3	30	89	0	111	33	33	21	11	1.90
32426622--32426697	30	2.5	30	82	0	89	27	35	9	27	1.87
32435293--32435336	2	22.0	2	95	0	79	50	2	0	47	1.13
32443870--32443895	1	26.0	1	100	0	52	100	0	0	0	0.00
32444433--32444457	2	12.5	2	100	0	50	48	0	0	52	1.00
32455354--32455405	21	2.5	21	80	0	59	17	28	13	40	1.87
32456406--32456735	160	2.1	161	94	2	583	35	12	10	41	1.77
32462571--32463296	354	2.0	355	87	1	1053	37	13	11	37	1.82
32470186--32470233	24	2.0	24	91	0	78	33	4	0	62	1.14
32470192--32470234	13	3.5	13	75	12	54	32	4	0	62	1.15
32470224--32470253	15	2.0	15	93	0	51	43	6	0	50	1.28
32470771--32470826	21	2.6	21	82	5	58	41	8	3	46	1.52
32470771--32470843	23	3.3	23	75	11	62	42	8	2	46	1.48
32476068--32476111	12	3.8	12	85	11	56	29	0	0	70	0.88
32476061--32476102	19	2.3	19	87	4	59	33	0	0	66	0.92
32488621--32488679	29	2.0	29	100	0	118	37	16	13	32	1.88
32496204--32496269	26	2.6	26	73	17	66	51	4	0	43	1.22
32496290--32496334	16	2.7	17	80	13	58	57	0	0	42	0.98
32501771--32501896	15	8.2	16	69	16	79	42	2	1	53	1.23
32501778--32501893	32	3.8	31	85	7	150	43	2	1	52	1.25
32501924--32501980	29	2.0	29	82	0	69	50	5	1	42	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32508508--32508557	23	2.2	23	85	0	64	30	12	8	50	1.68
32526735--32526902	61	2.8	58	75	12	160	27	8	10	52	1.65
32533292--32533321	2	15.0	2	100	0	60	0	50	0	50	1.00
32542005--32542054	24	2.1	24	92	0	82	40	12	20	28	1.87
32542507--32542660	76	2.0	76	87	0	218	32	14	14	38	1.87
32549406--32549485	40	1.9	41	92	7	135	22	7	17	52	1.69
32549949--32549976	10	2.8	10	100	0	56	10	7	28	53	1.62
32552913--32552948	18	2.0	18	94	0	63	27	8	16	47	1.75
32553438--32553462	2	12.5	2	100	0	50	0	48	0	52	1.00
32556421--32556574	80	1.9	80	88	2	229	19	12	14	53	1.73
32567477--32567641	82	2.0	82	95	0	294	30	11	12	44	1.78
32568268--32568510	119	2.0	122	84	9	318	15	13	21	49	1.78
32582991--32583034	22	2.0	22	91	8	72	45	13	9	31	1.75
32583003--32583046	22	2.0	22	82	8	54	52	9	9	29	1.64
32584061--32584983	157	5.8	156	92	3	1540	38	17	14	29	1.89
32584063--32584997	319	2.9	319	97	0	1761	39	17	14	29	1.89
32585029--32585059	1	31.0	1	100	0	62	100	0	0	0	0.00
32585975--32586003	3	9.7	3	100	0	58	68	0	0	31	0.89
32586165--32586229	20	3.2	20	86	0	85	21	30	30	16	1.96
32586343--32586444	1	102.0	1	76	0	87	4	0	7	87	0.67
32586345--32586442	12	7.9	12	77	18	103	5	0	8	86	0.69
32586452--32586986	41	13.0	39	88	9	721	39	21	17	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32586452--32586967	83	6.3	83	90	4	796	38	21	17	22	1.93
32589695--32589953	128	2.0	130	85	3	353	28	19	23	28	1.98
32590609--32590643	4	8.8	4	87	0	52	25	2	20	51	1.61
32594678--32594721	22	2.0	22	86	0	61	34	9	11	45	1.72
32601697--32601739	20	2.2	20	86	0	59	25	9	9	55	1.61
32611778--32611807	2	15.0	2	100	0	60	50	0	0	50	1.00
32613156--32613187	4	8.5	4	86	13	50	0	75	0	25	0.81
32613185--32613215	2	15.5	2	100	0	62	0	51	0	48	1.00
32617606--32617630	7	3.6	7	100	0	50	16	44	0	40	1.47
32617828--32617865	3	12.7	3	100	0	76	31	0	0	68	0.90
32622690--32622762	36	2.0	36	92	5	121	23	19	12	45	1.84
32623177--32623208	14	2.2	15	94	5	57	50	0	0	50	1.00
32623452--32623491	21	2.0	20	90	5	62	10	10	0	80	0.92
32623452--32623487	18	2.1	16	90	10	54	11	8	0	80	0.90
32627074--32627141	18	3.8	18	96	0	118	45	7	8	38	1.63
32634934--32635758	221	3.9	208	86	4	1030	29	30	13	25	1.94
32638650--32638689	14	2.9	14	100	0	80	35	15	35	15	1.88
32641147--32641182	17	2.1	17	94	0	63	33	13	5	47	1.67
32648168--32648202	18	1.9	18	94	0	61	40	22	14	22	1.90
32648551--32648630	42	1.9	42	92	0	133	52	15	8	23	1.70
32656212--32656299	34	2.5	35	89	8	128	40	18	10	30	1.83
32661171--32661240	32	2.2	31	97	2	131	47	27	5	20	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32668975--32669028	26	2.1	26	96	0	99	38	27	12	20	1.89
32672635--32672681	22	2.1	23	88	7	71	38	0	0	61	0.96
32672790--32672832	21	2.0	21	82	8	52	62	4	4	27	1.35
32689552--32689576	11	2.3	11	100	0	50	44	0	12	44	1.41
32702854--32702890	11	3.3	11	88	7	56	67	0	0	32	0.91
32703056--32703139	40	2.1	40	95	0	150	34	13	9	42	1.76
32703516--32703558	19	2.3	19	80	8	52	58	2	2	37	1.24
32709951--32710064	60	1.9	60	80	7	133	42	4	10	42	1.59
32710603--32710664	30	2.0	30	84	9	81	37	6	16	40	1.74
32724208--32724241	2	17.0	2	100	0	68	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190