genome.fa.s223.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  92  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14612397--14612449	26	2.0	26	92	0	88	28	18	24	28	1.98
14612189--14612632	184	2.4	185	86	1	595	24	27	27	21	1.99
14612582--14612660	26	3.0	26	90	0	131	26	17	25	30	1.97
14612404--14612819	211	2.0	211	84	1	548	23	25	28	23	2.00
14613511--14613563	26	2.0	26	96	0	97	26	18	26	28	1.98
14614391--14614443	26	2.0	26	96	0	97	28	20	24	26	1.99
14612608--14614926	905	2.6	888	84	4	2954	24	23	25	26	2.00
14616317--14616369	26	2.0	26	96	0	97	30	22	20	26	1.98
14618710--14618760	26	2.0	26	92	0	84	29	31	13	25	1.94
14620685--14620735	26	2.0	26	92	0	84	29	23	17	29	1.97
14621173--14621223	26	2.0	26	92	0	84	27	23	21	27	1.99
14622064--14622115	26	2.0	25	96	3	95	26	26	19	26	1.99
14622265--14623222	492	1.9	492	90	1	1508	32	21	18	27	1.97
14623937--14623987	26	2.0	26	84	0	66	52	9	9	27	1.65
14624360--14624409	26	1.9	26	91	0	82	34	24	14	28	1.93
14622747--14629106	906	6.9	902	77	10	5858	25	25	23	25	2.00
14625268--14625320	26	2.0	26	96	0	97	26	24	20	28	1.99
14626174--14626226	26	2.0	26	88	0	79	30	24	16	28	1.97
14626015--14626431	184	2.3	183	86	3	577	21	28	27	22	1.99
14627245--14627297	26	2.0	26	92	0	88	28	24	18	28	1.98
14628142--14628194	26	2.0	26	85	0	70	30	24	20	24	1.99
14626200--14629120	900	3.3	897	87	2	4065	25	25	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14629051--14629104	27	2.0	27	92	3	92	31	25	16	25	1.97
14632933--14632985	26	2.0	26	88	0	79	28	22	20	28	1.99
14633797--14633849	26	2.0	26	88	0	79	26	24	18	30	1.98
14634703--14634754	26	2.0	26	96	0	95	28	26	17	26	1.97
14635605--14635657	26	2.0	26	88	0	79	28	26	16	28	1.97
14633435--14644463	902	12.4	901	84	4	13468	25	24	23	25	2.00
14639131--14639185	26	2.1	27	86	3	76	21	23	21	32	1.98
14638261--14644463	901	6.9	894	84	4	7522	26	24	23	25	2.00
14641787--14641839	26	2.0	26	89	7	81	28	26	16	28	1.97
14642679--14642729	26	2.0	26	92	0	84	27	23	23	25	2.00
14643583--14643634	26	2.0	25	85	3	68	30	23	19	26	1.98
14640929--14644463	894	3.9	897	85	3	4642	26	24	23	25	2.00
14646207--14646259	26	2.0	26	89	7	81	30	24	16	28	1.97
14644556--14646972	898	2.7	897	87	3	3349	26	24	23	25	2.00
14646183--14647717	740	2.1	740	88	1	2225	26	23	23	26	2.00
14647850--14647902	26	2.0	26	96	0	97	26	24	20	28	1.99
14647930--14647981	25	2.0	26	89	10	81	28	23	17	30	1.97
14647838--14647984	79	1.9	80	92	1	251	25	22	23	28	1.99
14647838--14648001	79	2.1	80	89	1	249	25	21	25	28	1.99
14649731--14649783	26	2.0	26	96	0	97	28	26	18	26	1.98
14647918--14651545	903	4.0	904	87	2	4904	25	24	24	25	2.00
14650634--14650686	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14653794--14653843	26	1.9	26	100	0	100	24	28	20	28	1.99
14652896--14655809	892	3.3	861	81	8	3082	24	25	24	25	2.00
14657859--14657908	26	1.9	26	95	0	91	24	26	20	30	1.98
14658176--14658233	28	2.1	28	100	0	116	13	41	20	24	1.89
14658444--14658495	25	2.0	26	92	3	88	28	25	19	26	1.98
14659319--14659371	26	2.0	26	88	0	79	30	26	15	28	1.96
14661090--14661142	26	2.0	26	96	0	97	26	24	20	28	1.99
14662502--14662555	26	2.1	26	92	0	90	27	22	20	29	1.98
14663387--14663439	26	2.0	26	96	0	97	26	24	20	28	1.99
14663413--14665339	876	2.2	864	87	2	2756	25	24	24	25	2.00
14665080--14665496	158	2.6	158	85	0	537	19	30	28	21	1.98
14665470--14665522	26	2.0	26	92	0	88	30	24	18	26	1.98
14666338--14666390	26	2.0	26	96	0	97	32	26	15	26	1.95
14667273--14668053	399	2.0	388	88	4	1154	23	23	25	27	2.00
14670966--14671018	26	2.0	26	96	0	97	26	24	20	28	1.99
14671930--14671973	19	2.3	19	100	0	88	29	13	22	34	1.93
14672505--14672557	26	2.0	26	92	0	88	26	22	20	30	1.98
14671949--14677554	895	6.3	861	76	11	4328	26	24	23	25	2.00
14676090--14676142	26	2.0	26	96	0	97	32	22	18	26	1.97
14677715--14677767	26	2.0	26	88	0	79	28	26	16	28	1.97
14678958--14679010	26	2.0	26	92	0	88	28	18	24	28	1.98
14678984--14679352	159	2.3	159	87	2	528	21	27	29	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14680016--14680068	26	2.0	26	92	0	88	30	18	24	26	1.98
14680919--14680969	26	2.0	26	92	0	84	31	19	25	23	1.98
14679145--14682007	899	3.2	898	86	3	3797	25	23	24	25	2.00
14681788--14682178	159	2.5	155	80	4	396	21	28	27	21	1.99
14682843--14682895	26	2.0	26	96	0	97	26	20	24	28	1.99
14684443--14684493	26	2.0	26	92	7	86	27	15	27	29	1.96
14686231--14686283	26	2.0	26	100	0	106	26	20	26	26	1.99
14683712--14695159	883	12.9	881	82	7	12430	25	24	24	25	2.00
14687111--14687163	26	2.0	26	92	0	88	26	20	24	28	1.99
14688011--14688063	26	2.0	26	92	0	88	30	16	24	28	1.97
14690649--14690701	26	2.0	26	88	0	79	30	20	22	26	1.98
14692446--14692498	26	2.0	26	88	0	79	28	20	22	28	1.99
14695049--14695101	26	2.0	26	96	0	97	28	20	24	26	1.99
14697236--14697288	26	2.0	26	92	0	88	28	18	24	28	1.98
14698790--14698842	26	2.0	26	100	0	106	26	20	26	26	1.99
14699692--14699744	26	2.0	26	96	0	97	26	18	26	28	1.98
14697932--14701557	902	4.0	903	86	2	4740	25	24	24	25	2.00
14701495--14701546	25	2.0	26	89	10	81	30	17	23	28	1.97
14701574--14701626	26	2.0	26	96	0	97	28	20	24	26	1.99
14703217--14703269	26	2.0	26	89	7	81	28	16	24	30	1.97
14701759--14703292	740	2.1	739	87	2	2207	27	23	23	26	2.00
14702504--14704915	896	2.7	892	85	4	3172	25	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14705838--14705889	26	2.0	25	85	3	68	26	19	23	30	1.98
14706743--14706793	26	2.0	26	88	0	75	25	21	23	29	1.99
14705009--14709052	903	4.5	899	85	3	5044	25	23	24	26	2.00
14709659--14709691	11	3.0	11	95	0	57	21	27	33	18	1.96
14710389--14710421	11	3.0	11	95	0	57	21	27	33	18	1.96
14709051--14711042	730	2.7	729	96	0	3583	28	23	21	26	1.99
14711171--14711223	26	2.0	26	88	0	79	28	20	20	30	1.98
14712041--14712093	26	2.0	26	96	0	97	26	28	18	26	1.98
14712824--14715513	903	3.0	874	86	4	3647	25	24	24	24	2.00
14716368--14716420	26	2.0	26	96	0	97	26	26	22	24	2.00
14715514--14720722	904	5.8	903	89	1	7270	25	24	24	25	2.00
14717272--14717324	26	2.0	26	96	0	97	28	20	24	26	1.99
14718177--14718229	26	2.0	26	96	0	97	28	20	24	26	1.99
14719970--14720022	26	2.0	26	92	0	88	26	16	28	28	1.97
14720987--14721039	26	2.0	26	96	0	97	24	20	28	26	1.99
14721878--14721930	26	2.0	26	88	0	79	28	20	22	28	1.99
14723515--14723571	28	2.1	28	93	3	98	29	19	28	22	1.98
14721967--14724457	885	2.8	890	86	4	3306	25	23	24	26	2.00
14724400--14724452	26	2.0	26	88	0	79	24	20	22	32	1.98
14727527--14727579	26	2.0	26	92	0	88	26	20	26	26	1.99
14725962--14730156	843	4.7	858	82	7	3998	25	23	24	26	2.00
14728422--14728474	26	2.0	26	96	0	97	28	18	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14729323--14729372	26	1.9	26	91	0	82	32	22	22	24	1.98
14727268--14730166	901	3.2	893	87	2	4116	25	24	24	25	2.00
14731005--14731054	26	1.9	26	95	0	91	30	20	26	24	1.98
14731897--14731948	26	2.0	26	100	0	104	26	19	23	30	1.98
14732779--14732831	26	2.0	26	88	0	79	28	20	22	28	1.99
14730165--14737203	866	8.0	886	82	7	7985	25	23	24	25	2.00
14733681--14733734	26	2.1	26	92	0	90	24	18	27	29	1.98
14734542--14734592	25	2.0	25	92	0	84	29	19	23	27	1.98
14735406--14735458	26	2.0	26	96	0	97	26	22	24	26	2.00
14737890--14737942	26	2.0	26	85	0	70	22	18	26	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190