genome.fa.s223.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  122  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19281529--19281570	16	2.5	17	88	3	59	23	0	2	73	0.94
19282232--19282256	8	3.1	8	100	0	50	0	28	12	60	1.32
19282232--19282265	16	2.1	16	88	0	50	0	29	14	55	1.40
19283097--19283148	16	3.3	15	78	7	50	28	1	0	69	0.99
19283075--19283140	19	3.5	17	78	17	60	28	3	0	68	1.05
19283085--19283140	16	3.6	16	79	13	64	28	1	0	69	0.98
19283067--19283151	37	2.3	37	80	8	102	27	4	0	68	1.09
19286311--19286347	15	2.5	15	100	0	74	35	48	5	10	1.61
19303039--19303066	14	2.0	14	100	0	56	28	21	14	35	1.92
19304166--19304215	3	17.0	3	95	4	93	68	0	32	0	0.90
19326201--19326242	21	2.0	21	85	0	57	52	7	0	40	1.29
19326740--19326800	26	2.3	27	80	8	72	16	4	29	49	1.66
19326773--19326820	20	2.4	20	86	6	62	12	12	31	43	1.80
19327271--19327354	34	2.5	32	81	12	89	33	14	20	32	1.92
19327836--19327868	17	2.0	17	88	5	50	57	3	0	39	1.14
19328720--19329175	161	2.8	160	79	5	413	40	16	11	32	1.84
19335914--19336097	91	2.0	91	100	0	368	32	15	8	44	1.75
19336831--19336900	28	2.5	28	83	0	95	22	2	24	50	1.63
19336897--19336950	25	2.2	25	86	0	72	24	3	24	48	1.67
19336896--19336950	13	4.4	12	79	6	56	23	3	25	47	1.68
19338611--19338659	21	2.2	22	82	7	64	26	4	8	61	1.42
19340267--19340514	126	2.0	125	81	6	288	33	14	12	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19340300--19340581	126	2.2	126	78	6	277	30	13	14	40	1.85
19340800--19340934	63	2.1	62	81	5	146	31	21	14	32	1.93
19341861--19341915	18	3.1	18	75	12	51	60	12	9	18	1.58
19342535--19342577	17	2.6	16	78	7	50	4	20	11	62	1.46
19343400--19343469	17	4.1	18	85	10	94	22	1	1	74	0.98
19343407--19343470	8	7.6	8	73	16	58	21	1	1	75	0.98
19343395--19343475	33	2.5	32	86	7	110	22	1	1	75	0.95
19343400--19343475	18	4.4	16	83	9	89	22	1	1	75	0.96
19345302--19345349	16	2.9	17	87	6	71	0	16	0	83	0.65
19345302--19345349	17	2.8	17	87	6	62	0	16	0	83	0.65
19345301--19345375	19	4.1	18	75	14	64	1	17	0	81	0.76
19345309--19345372	23	2.6	24	75	7	58	1	17	0	81	0.77
19352792--19352833	3	14.0	3	100	0	84	0	0	33	66	0.92
19354173--19354220	24	2.0	24	95	0	87	18	33	10	37	1.85
19356544--19356582	17	2.2	17	86	9	51	69	5	2	23	1.21
19356976--19357022	20	2.3	20	85	0	58	17	10	29	42	1.82
19357459--19357493	12	2.9	12	86	0	52	60	5	8	25	1.49
19357773--19357869	51	1.9	51	91	0	158	36	6	4	53	1.45
19358574--19358610	18	2.0	19	94	5	67	2	10	16	70	1.27
19359364--19359395	11	2.9	11	95	0	55	15	0	0	84	0.63
19359367--19359399	14	2.4	14	90	5	50	18	0	0	81	0.68
19359379--19359421	23	1.9	22	85	4	59	25	2	0	72	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19369467--19369803	97	3.5	97	82	3	408	38	5	10	44	1.63
19370606--19370693	42	2.1	42	82	0	104	42	14	14	28	1.86
19370746--19371026	42	6.9	42	74	11	217	43	14	14	28	1.84
19370826--19371040	84	2.6	83	84	3	261	43	14	14	26	1.84
19371055--19371212	42	3.8	41	86	3	172	46	13	12	27	1.79
19371183--19371238	27	2.2	26	87	6	78	46	12	10	30	1.76
19371141--19371280	69	2.0	68	82	4	165	45	10	12	32	1.76
19373669--19373804	65	2.1	65	92	0	227	52	13	6	27	1.66
19373678--19373784	31	3.4	31	68	21	85	51	15	6	26	1.68
19373770--19373907	44	3.2	43	71	20	135	50	20	5	23	1.69
19373814--19373944	41	3.1	41	70	16	115	50	20	5	23	1.69
19373769--19373944	85	2.1	85	95	0	316	49	19	6	24	1.71
19385350--19385381	16	2.0	16	93	0	55	31	15	15	37	1.89
19399016--19399079	14	4.4	14	77	12	58	65	1	0	32	1.02
19399035--19399082	8	6.1	8	76	13	55	68	2	0	29	1.01
19399017--19399082	31	2.2	30	83	5	80	66	1	0	31	1.01
19399039--19399082	22	2.0	22	90	4	70	70	2	0	27	0.99
19399030--19399063	17	2.0	17	94	0	59	67	0	0	32	0.91
19400938--19400974	16	2.3	16	100	0	74	24	8	29	37	1.84
19401223--19401365	13	10.8	13	68	8	65	48	24	6	19	1.73
19401254--19401316	27	2.4	27	86	7	85	47	22	6	23	1.74
19401224--19401338	40	2.9	39	79	3	113	49	23	7	19	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19401325--19401373	26	1.9	25	84	12	64	48	28	8	14	1.72
19408041--19408085	16	2.8	16	86	6	65	75	0	17	6	1.01
19408057--19408106	18	2.6	19	84	6	66	76	0	20	4	0.95
19408127--19408157	9	3.3	9	95	4	53	64	0	22	12	1.27
19408100--19408157	14	4.1	14	77	16	50	67	1	20	10	1.29
19408495--19408537	20	2.2	20	87	4	61	86	4	6	2	0.79
19409113--19409191	32	2.4	32	81	10	90	37	20	13	27	1.91
19409210--19409356	34	4.4	34	79	7	124	38	18	16	27	1.92
19409116--19409588	33	14.4	33	71	12	192	36	19	15	28	1.92
19409108--19409358	135	1.9	133	80	6	301	37	19	15	27	1.92
19409385--19409459	32	2.3	31	86	8	105	36	16	18	29	1.92
19409046--19409585	98	5.5	99	72	11	250	36	19	15	29	1.92
19409649--19409864	33	6.7	33	74	10	162	36	18	14	30	1.91
19410651--19410791	66	2.2	65	81	3	158	36	23	12	26	1.91
19410675--19410896	33	6.8	32	72	11	132	37	20	12	29	1.89
19410675--19410896	98	2.3	98	81	8	240	37	20	12	29	1.89
19410675--19410917	96	2.5	98	79	8	230	37	19	12	29	1.89
19411365--19411404	18	2.2	19	90	4	64	75	5	0	20	0.99
19411439--19411503	26	2.7	23	75	17	60	63	4	1	30	1.24
19413622--19413754	13	10.0	13	72	8	70	48	22	8	20	1.75
19413697--19413754	14	4.4	14	76	10	59	46	22	8	22	1.79
19413695--19413778	26	3.2	27	81	3	82	46	26	7	20	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19414009--19414052	10	4.2	10	77	11	52	77	0	0	22	0.77
19414009--19414053	15	2.7	18	83	16	62	75	0	0	24	0.80
19415742--19415828	41	2.1	41	81	8	97	36	12	18	32	1.88
19417756--19417785	14	2.1	14	93	0	51	3	10	0	86	0.67
19426991--19427024	10	3.8	9	88	11	52	0	8	2	88	0.62
19430641--19430715	35	2.1	36	82	2	89	20	12	22	45	1.83
19433306--19433424	7	18.0	7	71	14	67	22	0	35	42	1.54
19433304--19433393	20	4.5	20	71	15	69	23	0	33	43	1.54
19433311--19433374	33	1.9	33	84	12	87	25	0	28	46	1.53
19436047--19436317	45	5.7	46	74	11	228	46	12	12	28	1.79
19436047--19436284	93	2.6	90	79	9	248	45	13	12	27	1.80
19437047--19437098	26	2.0	26	81	7	61	50	1	21	26	1.59
19437531--19437601	12	5.7	12	76	14	72	1	18	0	80	0.79
19437531--19437601	24	2.8	24	79	14	81	1	18	0	80	0.79
19437532--19437598	30	2.2	30	86	7	91	1	17	0	80	0.79
19437544--19437599	19	2.9	18	78	19	60	1	17	0	80	0.80
19437532--19437598	15	4.4	15	79	7	73	1	17	0	80	0.79
19437530--19437599	31	2.2	32	82	12	92	1	18	0	80	0.80
19437830--19437876	11	4.7	10	80	17	53	68	0	2	29	1.02
19437826--19437873	14	3.5	13	78	13	51	68	0	2	29	1.01
19438970--19439009	18	2.3	18	82	4	55	50	15	27	7	1.70
19439771--19439817	3	15.7	3	81	0	58	34	2	4	59	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19439772--19439824	12	4.4	12	78	0	52	33	5	3	56	1.41
19440079--19440117	15	2.8	13	82	17	51	74	0	2	23	0.94
19440089--19440126	20	1.9	20	88	0	58	71	0	7	21	1.11
19440260--19440309	13	3.8	13	89	0	73	58	26	4	12	1.51
19440260--19440309	26	1.9	26	91	0	82	58	26	4	12	1.51
19440427--19440472	19	2.4	18	85	7	56	36	26	15	21	1.93
19440638--19440697	27	2.2	28	81	3	68	68	0	1	30	0.99
19448916--19448972	8	7.0	8	92	4	87	63	0	0	36	0.95
19448916--19448981	25	2.6	25	88	7	89	65	0	0	34	0.93
19448900--19449033	8	16.8	8	78	11	80	66	2	0	30	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190