genome.fa.s223.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  186  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32021355--32021404	22	2.2	22	78	3	55	44	12	0	44	1.41
32039460--32039515	20	2.7	20	83	8	58	55	1	1	41	1.21
32041740--32041781	20	2.1	20	86	0	57	40	0	7	52	1.29
32044691--32044731	2	20.5	2	84	0	55	41	0	7	51	1.30
32044688--32044741	6	9.0	6	83	0	54	38	1	11	48	1.50
32044995--32045053	4	14.8	4	92	0	64	42	22	8	27	1.82
32045051--32045075	2	12.5	2	100	0	50	52	0	0	48	1.00
32055414--32055477	29	2.3	27	86	5	83	50	3	0	46	1.17
32057221--32057263	21	2.0	21	81	0	50	23	4	4	67	1.28
32069792--32069958	83	2.0	83	100	0	334	29	10	16	42	1.82
32079134--32079197	32	2.0	32	96	0	119	26	14	15	43	1.85
32084074--32084303	114	2.0	114	100	0	460	30	17	11	40	1.85
32091357--32091411	27	2.0	27	96	0	101	32	29	16	21	1.95
32093039--32093064	2	13.0	2	100	0	52	50	0	0	50	1.00
32095895--32095948	20	2.7	19	75	13	56	44	0	1	53	1.11
32096051--32096089	17	2.2	18	86	4	53	53	0	0	46	1.00
32111401--32111469	29	2.3	30	82	5	86	47	2	4	44	1.37
32112366--32112635	78	3.4	78	81	8	251	42	9	4	42	1.57
32112408--32112448	17	2.4	18	88	8	59	56	2	2	39	1.26
32112416--32112640	78	2.8	78	84	6	283	43	10	4	42	1.57
32114473--32114510	17	2.2	17	90	0	58	52	10	10	26	1.68
32114523--32114563	18	2.3	18	87	8	57	34	14	12	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32114768--32114834	34	1.9	35	81	3	82	52	11	7	28	1.65
32114900--32115040	46	3.1	44	71	10	124	40	15	9	34	1.81
32116262--32116291	8	3.9	8	91	8	53	10	0	0	90	0.47
32116262--32116290	15	1.9	15	100	0	58	10	0	0	89	0.48
32116270--32116328	17	3.3	16	75	22	55	11	10	0	77	0.98
32122636--32122678	19	2.3	19	100	0	86	13	16	25	44	1.85
32123078--32123150	29	2.5	30	82	6	87	36	2	1	58	1.21
32149676--32149730	27	2.0	27	89	0	83	43	21	1	32	1.63
32151045--32151183	69	2.0	69	87	2	199	33	33	7	25	1.83
32156659--32156698	10	4.0	10	90	9	64	82	0	7	10	0.84
32156659--32156705	11	4.2	11	83	10	60	80	0	8	10	0.89
32157792--32157975	43	4.3	44	81	7	189	28	11	12	47	1.77
32158269--32158309	19	2.2	19	86	4	57	43	2	17	36	1.62
32169648--32169727	39	2.1	39	87	0	115	41	11	22	25	1.87
32170577--32170607	12	2.6	12	89	0	53	61	0	0	38	0.96
32172265--32172295	16	1.9	16	93	0	53	32	0	19	48	1.49
32172974--32173011	7	5.7	7	87	6	53	28	0	0	71	0.87
32172981--32173018	20	1.9	20	84	10	51	28	2	0	68	1.03
32174666--32174702	12	3.0	13	84	11	51	45	5	0	48	1.25
32176594--32176645	24	2.2	25	82	6	63	28	5	1	63	1.28
32177659--32177685	2	13.5	2	100	0	54	48	0	0	51	1.00
32181865--32181894	15	2.0	15	100	0	60	20	6	33	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32182594--32182629	2	18.0	2	94	0	63	47	0	2	50	1.15
32182823--32182989	89	1.9	90	81	3	203	30	8	12	47	1.72
32185010--32185044	2	17.5	2	93	0	61	48	0	2	48	1.16
32191458--32191501	2	22.0	2	90	0	70	47	2	50	0	1.13
32193453--32193516	31	2.1	31	90	0	101	25	14	26	34	1.94
32203567--32203635	34	2.0	34	86	5	95	8	13	2	75	1.15
32203571--32203635	16	3.8	17	70	13	53	9	13	1	75	1.11
32203712--32203839	46	3.0	45	74	25	129	33	4	10	51	1.56
32203759--32203821	20	3.2	20	84	4	92	36	4	11	47	1.60
32203719--32203835	19	7.1	16	69	26	61	34	5	11	49	1.60
32205152--32205185	16	2.1	16	88	0	50	14	8	11	64	1.49
32208339--32208363	10	2.5	10	100	0	50	84	8	0	8	0.79
32208357--32208390	13	2.6	13	95	0	59	85	0	11	2	0.71
32209749--32209831	22	3.7	22	78	12	87	31	7	14	46	1.71
32209658--32209886	45	5.0	45	75	6	160	38	9	12	39	1.75
32209684--32209876	91	2.1	90	80	5	219	37	8	12	41	1.74
32210140--32210175	18	2.0	18	94	0	63	30	11	13	44	1.79
32210194--32210238	17	2.6	17	85	3	54	35	13	11	40	1.80
32210295--32210339	18	2.5	18	85	0	54	37	8	11	42	1.72
32210896--32210948	19	2.8	19	88	5	72	28	0	5	66	1.15
32212225--32212268	20	2.2	20	84	4	54	13	6	2	77	1.07
32212231--32212268	20	1.9	20	88	0	58	13	7	2	76	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32212251--32212282	12	2.5	13	95	5	57	12	6	0	81	0.87
32212225--32212279	20	2.8	20	78	8	51	14	7	1	76	1.08
32212253--32212290	11	3.5	11	89	7	51	13	7	0	78	0.94
32212425--32212457	8	4.2	8	88	3	50	36	0	3	60	1.12
32212425--32212457	16	2.1	15	94	5	57	36	0	3	60	1.12
32212444--32212506	19	3.3	19	82	8	83	31	4	12	50	1.61
32212686--32212875	100	1.9	101	84	5	258	43	12	8	35	1.73
32214419--32214484	24	2.6	25	73	7	62	37	0	3	59	1.13
32218700--32218741	16	2.6	16	85	7	50	45	0	2	52	1.13
32219941--32220064	64	1.9	64	80	6	144	25	8	8	58	1.56
32220484--32220517	7	5.0	7	92	7	61	29	0	0	70	0.87
32220484--32220517	13	2.5	14	95	4	61	29	0	0	70	0.87
32220484--32220526	14	2.9	15	89	3	61	32	0	0	67	0.91
32221338--32221368	8	3.8	8	95	4	53	9	3	0	87	0.66
32221527--32221780	41	6.1	41	81	9	232	46	19	12	21	1.83
32221527--32221780	82	3.1	82	79	7	262	46	19	12	21	1.83
32233064--32233168	53	1.9	55	84	3	142	26	11	6	55	1.60
32233557--32233589	7	5.0	7	92	7	52	24	0	0	75	0.80
32235976--32236071	35	2.7	35	82	3	113	39	22	6	31	1.79
32237999--32238079	3	28.0	3	75	12	80	30	1	4	62	1.24
32237992--32238079	30	2.9	31	81	11	94	29	2	5	62	1.30
32238766--32238815	26	1.9	26	100	0	100	40	2	34	24	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32238941--32239061	5	22.4	5	71	22	61	19	3	2	74	1.08
32238946--32239026	12	6.8	12	75	17	64	19	1	3	75	1.02
32238941--32239061	17	7.5	15	70	19	75	19	3	2	74	1.08
32239006--32239061	22	2.5	22	80	8	60	19	7	0	73	1.06
32240115--32240145	16	1.9	16	93	0	53	38	19	9	32	1.84
32241556--32241600	20	2.2	20	84	7	56	40	0	2	57	1.11
32241578--32241651	32	2.3	32	72	9	80	37	0	9	52	1.34
32241677--32242539	428	2.0	429	87	2	1225	46	4	5	43	1.47
32242287--32242320	15	2.4	14	90	5	50	55	2	0	41	1.15
32251701--32251772	37	2.0	37	94	2	128	41	2	13	41	1.59
32253887--32253911	2	12.5	2	100	0	50	0	52	0	48	1.00
32257820--32258034	72	3.0	71	91	4	342	44	8	13	33	1.74
32259358--32259388	3	10.3	3	100	0	62	32	0	0	67	0.91
32259519--32259567	3	16.3	3	100	0	98	32	0	0	67	0.91
32260756--32260786	12	2.5	13	94	5	55	12	0	0	87	0.55
32260749--32260788	13	3.0	14	85	10	57	15	2	0	82	0.77
32262299--32262384	23	3.7	23	89	3	120	25	0	25	48	1.51
32262299--32262408	23	4.8	24	78	9	97	26	0	26	47	1.53
32262294--32262452	23	7.0	22	74	13	85	23	0	28	47	1.52
32262490--32262531	15	2.8	16	82	10	61	23	4	16	54	1.61
32262465--32262629	55	3.0	55	81	5	165	27	3	21	47	1.66
32262552--32262581	15	2.0	15	93	0	51	30	6	20	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32262687--32262720	15	2.2	16	89	5	52	14	0	32	52	1.42
32262723--32262783	32	1.9	32	93	6	106	34	0	16	49	1.46
32262722--32262784	17	3.9	17	79	10	78	34	0	15	49	1.45
32262648--32262940	157	1.9	156	83	5	385	26	1	21	50	1.59
32262965--32263020	22	2.4	24	82	8	71	30	1	17	50	1.57
32262987--32263023	15	2.4	16	90	4	58	35	0	13	51	1.41
32266033--32266070	15	2.6	15	87	4	51	21	2	0	76	0.91
32266179--32266216	2	19.0	2	100	0	76	50	0	0	50	1.00
32272019--32272054	11	3.2	11	92	4	54	41	0	0	58	0.98
32272581--32272610	2	15.0	2	92	0	51	50	3	0	46	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190