genome.fa.s223.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  32  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5599613--5599667	16	3.4	17	85	7	78	36	1	0	61	1.06
5599628--5599670	13	3.3	13	87	12	54	34	0	0	65	0.93
5600622--5600668	3	16.0	3	91	4	78	65	2	0	31	1.04
5600628--5600667	20	2.0	20	100	0	80	70	0	0	30	0.88
5600631--5600664	17	2.0	17	100	0	68	70	0	0	29	0.87
5604414--5604925	59	8.7	58	80	10	540	35	12	6	44	1.70
5604414--5604945	234	2.3	237	89	4	812	36	12	7	44	1.70
5604942--5604966	13	1.9	13	100	0	50	80	0	0	20	0.72
5604952--5605024	22	3.3	21	77	11	76	78	1	6	13	1.02
5604942--5605024	11	7.2	12	76	13	52	78	1	6	14	1.00
5604942--5605038	5	18.6	5	73	14	72	76	2	6	15	1.08
5604942--5605024	17	4.9	16	77	14	78	78	1	6	14	1.00
5605580--5605632	25	2.1	24	86	6	70	54	18	3	22	1.59
5605959--5606074	21	5.5	21	76	16	98	65	1	2	30	1.16
5606003--5606192	4	48.2	4	72	14	96	64	3	2	30	1.20
5606010--5606066	3	18.7	3	82	13	64	66	0	0	33	0.92
5606013--5606236	12	19.2	12	67	19	84	66	3	2	28	1.18
5605969--5606131	40	4.2	38	75	17	120	66	3	1	28	1.17
5606003--5606074	22	3.6	20	84	15	87	66	0	0	33	0.92
5606160--5606248	19	4.7	18	78	12	74	74	2	1	22	1.00
5606203--5606248	18	2.5	19	86	10	69	76	0	0	23	0.79
5606167--5606249	25	3.3	23	75	15	76	74	2	1	21	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5606909--5607030	59	2.1	59	92	3	201	37	7	9	45	1.64
5608464--5608511	19	2.5	19	80	19	55	35	2	2	60	1.20
5617167--5617202	10	3.5	11	82	17	51	69	16	0	13	1.19
5619520--5619563	6	7.5	6	90	10	65	47	0	0	52	1.00
5619607--5619655	24	2.0	24	84	11	64	24	2	12	61	1.42
5620665--5620706	11	3.9	11	87	6	59	11	0	4	83	0.79
5620666--5620706	21	2.0	21	90	0	64	12	0	4	82	0.81
5620677--5620706	5	5.8	5	92	7	51	16	0	0	83	0.65
5620848--5620917	21	3.5	19	77	12	70	34	7	11	47	1.67
5620847--5620935	41	2.2	41	82	8	110	32	6	10	50	1.62
5620847--5620942	21	4.7	20	72	20	65	33	6	10	50	1.62
5622221--5622321	20	5.1	20	69	10	73	20	8	10	59	1.58
5622188--5622330	58	2.4	58	91	2	232	22	11	10	55	1.66
5625815--5625967	69	2.2	69	87	4	227	33	13	18	34	1.90
5626464--5626620	18	8.9	17	74	8	109	34	10	10	44	1.73
5626464--5626620	53	3.0	54	77	3	158	34	10	10	44	1.73
5626468--5626620	35	4.3	36	79	4	132	35	11	9	44	1.72
5626568--5626648	35	2.3	35	81	8	85	34	14	9	40	1.80
5626633--5626676	17	2.6	17	78	3	54	38	22	13	25	1.91
5626755--5626819	33	2.0	33	87	6	96	32	21	13	32	1.93
5627231--5627287	24	2.6	20	75	21	60	31	1	10	56	1.44
5627311--5627409	21	5.0	21	78	10	84	35	6	10	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5628724--5628758	7	5.0	7	93	6	54	42	0	0	57	0.99
5628724--5628765	14	3.0	13	86	13	57	42	0	0	57	0.99
5629142--5629194	26	2.0	26	85	7	72	26	0	9	64	1.24
5629913--5630002	38	2.3	41	81	11	107	47	0	3	48	1.18
5632189--5632239	19	2.7	19	82	8	61	52	3	1	41	1.31
5632374--5632511	73	1.9	73	81	3	170	40	10	3	45	1.55
5634551--5634598	21	2.3	20	86	13	62	58	2	0	39	1.10
5635494--5635528	16	2.1	17	89	5	54	37	5	2	54	1.39
5635491--5635531	17	2.4	18	84	12	59	39	4	2	53	1.35
5639450--5639494	21	2.1	21	83	0	54	42	6	11	40	1.67
5643624--5643682	17	3.6	17	76	15	61	20	0	5	74	1.00
5643626--5643688	33	1.9	33	87	3	92	22	0	4	73	1.02
5646920--5646994	4	18.5	4	75	20	59	77	1	1	20	0.92
5646947--5646986	5	8.6	5	83	10	50	80	0	0	20	0.72
5646944--5646994	9	5.9	9	78	21	56	78	0	0	21	0.75
5646944--5646998	13	4.1	14	86	13	73	78	0	0	21	0.76
5648131--5648228	43	2.3	43	83	3	126	31	16	12	39	1.85
5648859--5648920	27	2.3	27	83	8	72	48	19	8	24	1.75
5648739--5649096	177	2.0	177	94	1	628	35	18	10	35	1.86
5649245--5649391	71	2.1	69	82	6	170	45	14	13	25	1.82
5649361--5649490	50	2.6	50	86	0	170	42	13	12	32	1.81
5649645--5649683	21	1.9	20	84	5	51	53	20	0	25	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5656665--5656729	24	2.5	27	80	14	75	58	10	4	26	1.51
5656705--5656743	19	2.1	19	85	9	53	53	12	5	28	1.60
5656665--5656731	26	2.7	25	80	13	75	58	10	4	26	1.50
5656726--5656781	29	2.0	29	89	3	87	51	12	3	32	1.56
5656733--5656777	13	3.1	15	76	17	51	48	13	4	33	1.62
5656927--5656979	27	2.0	26	85	14	72	79	0	5	15	0.91
5665453--5665492	14	2.9	14	100	0	80	37	7	7	47	1.60
5665602--5665722	44	2.7	44	83	8	154	28	9	14	47	1.74
5665624--5665745	44	2.7	47	82	11	121	28	9	14	46	1.77
5667449--5667489	19	2.3	19	83	8	50	53	2	9	34	1.47
5668895--5668924	10	3.1	10	90	9	53	26	0	0	73	0.84
5668892--5668938	11	4.4	11	79	20	55	29	0	0	70	0.88
5668892--5668935	19	2.3	19	88	7	63	29	0	0	70	0.88
5678626--5678655	9	3.2	9	95	4	51	63	0	0	36	0.95
5678628--5678657	10	3.1	10	95	4	53	63	0	0	36	0.95
5679332--5679374	20	2.3	19	92	8	70	32	0	0	67	0.91
5679332--5679375	10	4.7	9	81	18	54	34	0	0	65	0.93
5680219--5680246	13	2.2	13	100	0	56	92	0	7	0	0.37
5691632--5691664	14	2.4	14	90	5	50	60	0	9	30	1.27
5706100--5706141	13	3.1	13	80	19	50	42	14	9	33	1.78
5706123--5706182	20	3.0	20	79	11	70	51	11	5	31	1.60
5706277--5706344	19	3.3	19	71	26	57	54	11	4	29	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5706276--5706337	24	2.6	24	87	7	90	54	11	3	30	1.51
5706324--5706374	16	3.3	16	72	10	52	56	11	3	27	1.52
5706412--5706457	14	3.1	14	82	14	56	45	17	6	30	1.73
5706459--5706505	22	2.2	23	78	17	57	57	6	4	31	1.43
5706410--5706533	16	7.6	16	67	17	76	53	11	5	29	1.59
5707158--5707190	12	2.8	12	95	0	57	69	9	0	21	1.15
5708917--5710154	617	2.0	616	96	1	2268	47	19	7	25	1.76
5721376--5721435	22	2.7	21	78	17	59	18	1	3	76	1.00
5722980--5723496	58	8.6	58	79	10	427	41	5	11	40	1.64
5723068--5723105	16	2.4	16	82	4	51	42	5	2	50	1.39
5722994--5723438	245	1.8	241	87	5	673	42	4	11	41	1.62
5722982--5723499	120	4.3	120	79	11	510	41	5	11	41	1.65
5738757--5738851	30	3.2	30	79	5	102	37	10	4	47	1.58
5740169--5740193	13	1.9	13	100	0	50	80	0	0	20	0.72
5749489--5749519	2	15.5	2	100	0	62	51	0	0	48	1.00
5751151--5751212	27	2.3	27	86	5	81	51	0	3	45	1.17
5752100--5752147	24	2.0	24	84	8	62	45	6	2	45	1.40
5752935--5752979	21	2.2	20	84	15	56	31	0	0	68	0.89
5753265--5753347	30	2.8	29	82	12	98	37	6	4	51	1.48
5753314--5753495	60	3.1	59	83	6	215	42	7	1	48	1.41
5753257--5753487	29	7.7	30	69	15	147	40	7	2	49	1.44
5753506--5753571	29	2.3	29	89	0	96	51	3	1	43	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5754308--5754341	14	2.3	15	90	5	52	29	0	2	67	1.05
5755329--5755369	11	3.6	11	83	6	55	53	0	0	46	1.00
5760101--5760177	32	2.4	32	87	8	104	49	0	1	49	1.09
5760118--5760182	15	4.2	15	73	11	51	46	0	3	50	1.17
5760356--5760440	11	7.5	11	69	19	50	49	2	3	44	1.32
5768956--5769020	25	2.6	25	80	2	78	69	4	0	26	1.08
5770495--5770561	32	2.1	32	81	10	75	40	17	16	25	1.90
5770311--5770630	165	1.9	165	90	0	514	38	15	13	33	1.86
5770989--5771075	33	2.6	33	76	3	86	43	10	21	24	1.83
5771875--5771921	22	2.1	22	84	0	58	25	12	27	34	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190