genome.fa.s223.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  183  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31122170--31122211	21	2.0	21	86	13	59	66	0	2	30	1.04
31124933--31124976	22	2.0	22	90	0	70	22	38	6	31	1.81
31131757--31131812	26	2.2	26	80	6	60	50	0	5	44	1.25
31133524--31133571	2	24.0	2	95	0	87	52	0	0	47	1.00
31133571--31133595	2	12.5	2	100	0	50	52	0	48	0	1.00
31135956--31136005	18	2.8	18	78	6	57	60	2	0	38	1.09
31137242--31137353	53	2.0	55	91	8	183	49	1	17	31	1.58
31143034--31143069	2	18.5	2	94	5	65	0	47	0	52	1.00
31169425--31169455	12	2.6	12	94	0	53	38	0	0	61	0.96
31171362--31171400	20	2.0	20	90	10	62	33	0	0	66	0.92
31172132--31172185	25	2.2	25	86	6	74	48	0	1	50	1.11
31172132--31172192	25	2.4	25	83	8	61	49	1	1	47	1.21
31175710--31175739	10	3.1	10	95	4	53	63	0	0	36	0.95
31180831--31180872	20	2.0	22	86	9	61	71	0	0	28	0.86
31189121--31189195	27	2.8	26	80	7	80	49	0	2	48	1.15
31189265--31189335	15	5.0	15	74	14	62	43	0	1	54	1.08
31189272--31189336	29	2.2	29	81	8	78	43	0	1	55	1.09
31189314--31189340	12	2.2	12	100	0	54	40	0	0	59	0.98
31189566--31189610	18	2.6	18	86	10	58	37	8	6	46	1.61
31191044--31191086	16	2.8	15	82	3	50	41	4	0	53	1.21
31192733--31192782	24	2.2	24	82	7	59	56	2	6	36	1.36
31198786--31198850	31	2.1	31	100	0	130	47	20	9	23	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31201507--31201559	11	4.5	11	77	9	52	64	3	0	32	1.12
31202015--31202103	45	2.0	44	84	2	115	41	13	15	29	1.85
31202300--31202344	2	22.5	2	95	0	81	46	0	2	51	1.13
31202455--31202491	14	2.6	14	91	0	65	59	0	2	37	1.12
31202435--31202493	14	3.7	15	80	13	57	55	1	1	40	1.20
31202581--31202742	34	4.8	34	77	4	148	43	3	3	49	1.38
31202590--31202742	67	2.3	67	87	3	218	41	3	3	50	1.37
31202624--31202757	67	2.0	68	81	7	157	44	2	5	47	1.40
31210002--31210141	69	2.0	68	85	6	185	34	25	5	35	1.78
31210482--31210538	22	2.6	22	86	8	73	49	10	0	40	1.37
31212431--31212473	20	2.2	20	83	8	52	55	2	2	39	1.25
31213012--31213048	8	4.4	8	87	12	56	29	0	0	70	0.88
31213003--31213050	18	2.7	18	84	12	71	33	0	0	66	0.92
31216754--31216820	24	2.7	24	81	4	71	44	2	1	50	1.26
31217769--31217803	2	17.5	2	100	0	70	0	48	0	51	1.00
31228555--31228614	30	2.0	30	96	0	111	55	8	23	13	1.65
31231808--31231945	70	2.0	69	97	2	260	31	24	7	36	1.83
31239760--31239863	51	2.0	51	85	5	138	46	5	17	30	1.71
31242297--31242370	31	2.4	31	86	2	96	39	12	17	31	1.86
31261725--31261766	20	2.1	20	100	0	84	40	23	7	28	1.81
31273986--31274045	13	4.5	13	75	10	50	43	1	1	53	1.20
31274125--31274164	19	2.1	19	85	0	53	50	7	0	42	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31274901--31274973	28	2.6	28	85	8	105	53	0	0	46	1.00
31274915--31274985	27	2.6	26	82	12	97	59	0	0	40	0.98
31274915--31274985	28	2.6	27	79	16	92	59	0	0	40	0.98
31279740--31279787	23	2.0	25	84	8	64	47	6	18	27	1.72
31283726--31283772	25	1.9	24	91	4	76	74	10	14	0	1.07
31287100--31287145	23	1.9	25	86	8	69	56	17	10	15	1.67
31295808--31295869	29	2.1	29	93	0	106	30	17	16	35	1.92
31301174--31301259	45	1.9	45	95	0	154	38	18	17	25	1.92
31305983--31306041	31	1.9	31	93	3	102	20	3	8	67	1.31
31306131--31306169	15	2.6	14	88	8	51	35	0	0	64	0.94
31306152--31306212	26	2.3	27	85	5	88	37	6	0	55	1.26
31307233--31307280	16	3.2	15	83	13	55	47	2	0	50	1.12
31310165--31310197	14	2.4	14	90	5	50	48	6	0	45	1.27
31315108--31315160	23	2.3	23	74	6	54	26	0	7	66	1.18
31315205--31315256	22	2.2	24	81	15	65	50	3	0	46	1.20
31317832--31317969	72	1.9	72	83	5	181	28	39	6	25	1.81
31317964--31318104	33	4.3	33	68	20	114	28	38	9	24	1.86
31317983--31318034	27	1.9	27	92	0	86	34	34	7	23	1.83
31318268--31318347	24	3.3	24	96	0	142	11	51	13	23	1.74
31318327--31318478	69	2.3	66	88	3	223	20	46	10	22	1.81
31318462--31318493	15	2.1	15	94	0	55	6	65	6	21	1.38
31318573--31318601	15	1.9	15	100	0	58	3	68	6	20	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31318459--31318682	110	2.1	108	93	1	385	19	46	11	22	1.81
31318724--31318753	15	2.0	15	93	0	51	6	63	6	23	1.43
31318830--31318858	15	1.9	15	100	0	58	3	68	6	20	1.27
31318725--31318937	106	2.0	108	89	5	335	16	48	11	23	1.78
31318842--31318988	69	2.2	67	86	6	199	21	45	10	21	1.82
31318986--31319191	107	1.9	108	94	4	364	18	47	11	22	1.80
31319097--31319244	69	2.2	66	87	6	208	20	46	10	22	1.80
31319232--31319263	15	2.1	15	94	0	55	6	65	6	21	1.38
31319079--31319686	150	3.7	154	81	12	618	19	45	11	23	1.82
31319190--31319417	75	2.9	77	83	7	271	21	46	9	23	1.80
31319388--31319441	24	2.2	24	87	6	74	14	44	14	25	1.84
31319388--31319449	24	2.6	24	77	10	65	14	46	12	25	1.80
31319565--31319617	23	2.2	24	86	3	81	15	50	15	18	1.77
31319657--31319708	22	2.2	24	83	6	72	15	46	17	21	1.84
31319367--31319762	91	4.4	91	87	7	558	18	43	12	25	1.85
31319189--31319834	336	1.9	331	81	9	776	19	44	10	24	1.83
31319702--31319834	66	2.0	68	86	4	189	23	42	9	25	1.83
31320897--31320952	24	2.3	24	76	14	60	35	1	3	58	1.26
31320961--31321000	16	2.4	17	87	8	55	47	2	0	50	1.14
31321518--31321558	5	7.8	5	84	10	55	73	0	0	26	0.84
31321508--31321562	22	2.5	22	88	8	76	65	0	1	32	1.03
31321522--31321554	17	1.9	17	100	0	66	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31322537--31322566	15	2.0	15	100	0	60	40	0	6	53	1.27
31325006--31325159	82	1.9	82	93	0	263	49	7	15	27	1.72
31331349--31331392	22	2.0	22	95	0	79	43	13	11	31	1.80
31331323--31331478	78	2.0	78	98	0	303	44	12	12	30	1.79
31331427--31331470	22	2.0	22	91	8	72	45	13	9	31	1.75
31335115--31335173	25	2.4	25	86	5	77	40	18	27	13	1.88
31335321--31335364	22	2.0	22	95	0	79	43	13	11	31	1.80
31335295--31335450	78	2.0	78	100	0	312	43	12	12	30	1.81
31335399--31335442	22	2.0	22	95	0	79	43	13	11	31	1.80
31345467--31345514	18	2.7	17	81	12	60	75	2	0	22	0.91
31347207--31347255	24	2.0	24	96	0	89	34	10	16	38	1.82
31347826--31347868	21	2.0	21	100	0	86	18	13	9	58	1.62
31348322--31348354	15	2.2	15	100	0	66	69	0	12	18	1.18
31359152--31359532	197	1.9	197	84	2	505	35	6	14	43	1.72
31361556--31361591	3	11.3	3	88	11	54	63	0	0	36	0.94
31361822--31361885	20	3.3	20	70	27	57	53	0	1	45	1.10
31361833--31361908	41	1.9	38	84	7	98	55	0	1	43	1.08
31361875--31361941	27	2.5	26	82	4	71	46	2	1	49	1.26
31363016--31363065	4	12.5	4	86	0	64	48	6	0	46	1.27
31363016--31363065	6	8.3	6	88	0	64	48	6	0	46	1.27
31363016--31363065	10	5.0	10	87	0	64	48	6	0	46	1.27
31366533--31366557	12	2.1	12	100	0	50	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31366597--31366641	15	3.4	14	73	20	51	46	0	0	53	1.00
31366596--31366662	26	2.8	23	82	13	82	47	1	0	50	1.10
31366596--31366668	25	3.0	24	75	15	69	47	2	0	49	1.15
31366583--31366746	85	1.9	86	91	7	273	46	3	0	50	1.19
31376916--31376949	17	2.0	17	94	0	59	47	14	2	35	1.60
31378990--31379022	13	2.5	14	85	14	52	54	0	0	45	0.99
31405040--31405070	13	2.4	13	94	0	53	12	0	3	83	0.75
31405610--31405665	21	2.7	21	86	5	69	51	8	3	35	1.51
31409566--31409603	2	19.0	2	94	0	58	50	5	0	44	1.24
31411875--31411916	17	2.5	17	80	7	50	52	0	0	47	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190