genome.fa.s223.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  63  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10391242--10391288	16	3.1	16	75	12	53	36	2	2	59	1.21
10392026--10392068	22	2.0	22	95	0	77	32	11	11	44	1.77
10395794--10395909	41	2.8	41	90	2	169	28	20	19	31	1.97
10403360--10403409	24	2.1	24	88	0	73	44	4	20	32	1.70
10408997--10409070	37	2.0	37	97	0	139	52	2	4	40	1.34
10410325--10410381	22	2.4	25	74	20	66	61	10	10	17	1.56
10410328--10410371	22	2.0	22	90	0	70	63	13	9	13	1.51
10413742--10414015	136	2.0	136	97	0	521	34	17	17	29	1.94
10415785--10415815	13	2.3	14	94	5	55	12	6	9	70	1.31
10415845--10415886	21	2.1	21	86	8	61	21	4	14	59	1.53
10420784--10420821	18	2.1	18	90	0	58	15	21	5	57	1.57
10422761--10422785	13	1.9	13	100	0	50	32	0	8	60	1.26
10433511--10433796	142	2.0	142	98	0	554	27	15	15	41	1.87
10436945--10437490	158	3.5	158	81	3	650	31	7	22	38	1.82
10440832--10440973	73	1.9	73	98	0	275	37	20	7	35	1.80
10443064--10443215	43	3.5	43	90	1	225	44	14	13	27	1.82
10449970--10450002	16	2.0	17	88	5	50	24	0	42	33	1.55
10463324--10463385	32	1.9	32	100	0	124	45	3	16	35	1.63
10466234--10466273	19	2.0	20	85	4	55	25	5	0	70	1.08
10466473--10466523	14	3.6	14	86	0	75	17	3	19	58	1.54
10466473--10466538	14	4.7	14	83	3	71	15	4	21	59	1.54
10466628--10466659	10	3.4	10	83	16	50	18	0	0	81	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10473755--10473820	27	2.4	27	100	0	132	21	9	36	33	1.85
10474835--10474884	20	2.5	20	76	3	55	34	22	24	20	1.97
10491575--10491636	21	3.0	22	74	9	67	61	11	14	12	1.57
10494380--10495763	692	2.0	692	78	9	1412	52	5	10	30	1.60
10496392--10496956	239	2.4	238	80	7	583	51	5	11	31	1.62
10497525--10497557	14	2.4	14	85	15	50	69	3	0	27	1.03
10503102--10503147	21	2.2	21	88	7	67	47	0	0	52	1.00
10503580--10503609	7	4.3	7	95	0	51	56	13	16	13	1.67
10503866--10503900	2	17.5	2	100	0	70	48	0	0	51	1.00
10507524--10507562	5	8.6	5	91	8	50	82	17	0	0	0.68
10507524--10507562	9	4.3	9	84	12	53	82	17	0	0	0.68
10510510--10510550	17	2.4	17	95	0	73	41	29	7	21	1.80
10513644--10513697	27	2.0	27	100	0	108	37	22	11	29	1.89
10515204--10515269	29	2.3	28	82	7	87	62	1	4	31	1.25
10515210--10515269	30	2.0	30	90	6	95	58	1	5	35	1.30
10516357--10516550	73	2.7	73	91	0	307	35	11	9	44	1.72
10520887--10520956	24	3.2	24	60	35	57	20	0	17	62	1.32
10520873--10520961	42	2.1	42	95	0	160	22	0	16	60	1.35
10527572--10527620	23	2.1	24	82	17	59	12	4	16	67	1.37
10528512--10528591	6	12.8	6	73	12	63	78	3	13	3	1.02
10528509--10528591	13	6.5	13	73	14	57	78	3	14	3	1.03
10530747--10530817	11	6.5	11	74	6	54	4	8	4	83	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10530744--10530814	37	1.9	37	88	5	108	4	11	4	80	1.00
10531125--10531183	23	2.6	24	89	10	97	33	0	23	42	1.55
10531182--10531219	20	1.9	20	94	0	67	34	0	23	42	1.55
10531080--10531220	74	1.9	71	81	8	167	34	0	22	42	1.59
10531907--10531958	10	5.2	10	81	9	70	30	1	15	51	1.54
10533613--10533806	54	3.5	55	76	10	200	37	6	6	48	1.56
10533853--10533993	57	2.5	56	79	10	135	36	5	8	49	1.57
10534077--10534118	22	2.0	21	85	4	57	66	7	0	26	1.17
10534104--10534143	20	2.0	20	85	5	53	60	5	2	32	1.32
10535048--10535072	3	8.3	3	100	0	50	68	0	0	32	0.90
10535397--10535461	33	2.0	33	87	6	96	47	9	15	27	1.76
10538336--10538620	142	2.0	142	96	0	525	31	15	13	39	1.86
10541361--10541471	35	3.2	35	64	31	92	27	9	17	46	1.77
10541346--10541489	70	2.1	70	100	0	288	26	9	16	47	1.78
10547546--10547578	10	3.3	10	100	0	66	66	0	0	33	0.92
10548313--10548361	20	2.4	20	82	3	62	18	4	16	61	1.50
10550353--10550389	2	19.0	2	94	5	67	48	0	0	51	1.00
10550441--10550501	31	2.0	30	87	3	86	44	1	8	45	1.43
10552094--10552132	18	2.2	18	85	0	51	7	30	0	61	1.24
10553024--10553058	6	6.0	6	93	6	63	51	0	0	48	1.00
10553213--10553252	18	2.3	18	91	4	64	67	0	0	32	0.91
10553213--10553249	16	2.2	17	90	4	58	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10554178--10554234	18	3.1	18	84	5	69	50	28	0	21	1.48
10554184--10554237	14	3.9	14	77	0	54	50	31	0	18	1.48
10554177--10554244	20	3.4	20	81	0	82	48	25	1	25	1.60
10554196--10554242	18	2.6	18	86	0	67	48	25	2	23	1.62
10557410--10557454	22	2.0	22	83	8	56	35	8	26	28	1.87
10559169--10559222	21	2.5	22	82	14	69	22	1	0	75	0.89
10559418--10559534	6	19.3	6	70	10	51	73	7	1	17	1.15
10560604--10561005	40	10.3	39	81	4	436	42	17	12	27	1.85
10560604--10561011	78	5.2	77	82	3	476	42	17	12	27	1.84
10573437--10573473	3	13.0	3	83	11	51	67	2	0	29	1.04
10573444--10573560	12	9.6	12	71	15	64	72	6	0	19	1.12
10573482--10573556	13	5.9	13	78	10	57	76	6	1	16	1.07
10573483--10573548	25	2.7	24	81	6	78	74	7	0	18	1.05
10573825--10573926	51	2.0	52	84	5	136	36	15	14	33	1.88
10574506--10574541	18	2.0	18	88	0	54	52	0	13	33	1.41
10574673--10574719	25	2.0	24	84	12	62	36	0	0	63	0.94
10575720--10575784	18	3.8	18	71	22	68	52	0	1	46	1.10
10577089--10577131	16	2.6	17	78	10	54	62	2	2	32	1.20
10577582--10577611	2	15.0	2	92	0	51	46	0	0	53	1.00
10577757--10577853	48	2.0	48	97	0	185	30	14	18	36	1.91
10579518--10579569	22	2.4	22	86	0	77	42	11	9	36	1.74
10582357--10582386	14	2.1	14	93	0	51	50	0	16	33	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10613689--10613731	21	2.0	21	86	0	59	25	39	2	32	1.69
10613689--10613809	18	6.7	18	69	12	79	32	33	3	31	1.74
10616384--10616436	26	2.0	26	96	0	97	26	18	26	28	1.98
10617251--10617303	26	2.0	26	100	0	106	26	20	26	26	1.99
10618143--10618195	26	2.0	26	88	0	79	30	20	20	28	1.98
10616963--10621163	901	4.7	887	84	6	5322	25	24	25	24	2.00
10619446--10619497	26	2.0	26	88	0	77	23	5	13	57	1.57
10619917--10619969	26	2.0	26	92	0	88	30	16	26	26	1.97
10620818--10620870	26	2.0	26	92	0	88	26	16	26	30	1.97
10621159--10642955	896	24.4	865	78	10	17783	25	23	25	25	2.00
10624633--10624685	26	2.0	26	89	7	81	28	18	22	30	1.98
10626387--10626439	26	2.0	26	92	0	88	24	20	26	28	1.99
10627278--10627330	26	2.0	26	92	0	88	28	18	24	28	1.98
10629287--10629339	26	2.0	26	88	0	79	26	18	26	28	1.98
10632793--10632845	26	2.0	26	85	7	72	33	16	18	30	1.94
10633701--10633753	26	2.0	26	88	0	79	32	15	24	28	1.95
10633934--10633967	16	2.1	16	94	0	59	8	26	64	0	1.22
10635444--10635496	26	2.0	26	100	0	106	26	20	26	26	1.99
10636297--10636349	26	2.0	26	100	0	106	26	20	26	26	1.99
10638060--10638110	26	2.0	26	96	0	93	31	19	21	27	1.97
10638958--10639010	26	2.0	26	100	0	106	26	20	26	26	1.99
10639865--10639915	26	2.0	26	92	0	84	29	17	23	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10640772--10640821	26	1.9	26	100	0	100	28	20	30	22	1.98
10641666--10641717	26	2.0	26	92	0	86	28	17	25	28	1.97
10642143--10648137	823	7.0	822	72	15	3717	25	24	24	26	2.00
10644181--10644233	26	2.0	26	92	0	88	26	20	26	26	1.99
10647685--10647737	26	2.0	26	88	0	79	26	15	26	32	1.95
10649440--10649492	26	2.0	26	92	0	88	28	18	24	28	1.98
10650325--10650404	27	3.0	27	94	3	137	27	18	25	28	1.98
10652120--10652172	26	2.0	26	96	0	97	28	20	24	26	1.99
10646809--10654820	894	9.0	894	84	5	9450	25	24	24	25	2.00
10653909--10653961	26	2.0	26	85	7	72	30	16	22	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190