genome.fa.s223.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  56  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9228116--9228201	17	5.1	17	76	9	86	39	24	9	26	1.85
9228116--9228217	51	2.0	51	92	3	170	39	22	10	27	1.87
9228418--9228554	65	2.2	64	80	7	147	26	21	7	45	1.77
9228980--9229086	51	2.1	51	89	3	162	39	6	12	42	1.68
9230437--9230522	6	13.7	6	80	11	50	23	3	2	70	1.14
9230438--9230523	16	5.0	16	73	16	57	24	3	2	69	1.15
9230426--9230472	23	2.0	24	87	4	69	19	2	2	76	0.99
9232061--9232103	12	3.3	13	83	9	52	74	18	6	0	1.04
9232067--9232111	12	3.4	14	82	14	51	71	17	8	2	1.23
9234183--9234388	102	2.0	102	97	0	385	26	28	11	33	1.91
9235781--9235810	14	2.1	15	93	6	53	76	0	3	20	0.92
9237084--9237112	11	2.5	12	94	5	51	79	0	0	20	0.74
9238011--9238051	18	2.3	18	87	4	57	9	17	2	70	1.25
9238167--9238199	2	16.5	2	93	0	57	51	0	0	48	1.00
9238447--9238500	24	2.3	23	75	12	56	7	16	1	74	1.14
9239820--9239854	18	1.9	18	88	0	52	45	11	8	34	1.71
9246201--9246274	29	2.9	24	73	22	71	58	0	2	39	1.13
9247757--9249151	697	2.0	696	98	0	2709	33	12	17	36	1.87
9253260--9253550	158	1.8	158	82	3	379	35	6	19	38	1.77
9254074--9254123	20	2.5	20	83	6	66	26	0	26	48	1.52
9254315--9254356	20	2.0	20	86	4	57	40	9	14	35	1.78
9255499--9255532	12	2.8	12	90	0	50	67	2	5	23	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9255546--9255596	18	2.9	17	80	11	59	80	3	1	13	0.94
9266968--9267132	77	2.1	77	93	0	276	41	6	9	42	1.62
9267312--9267353	3	13.7	3	90	5	66	66	2	0	30	1.04
9267691--9267729	21	1.9	20	84	5	51	58	15	5	20	1.55
9268221--9268265	16	2.8	17	77	9	51	73	4	0	22	1.01
9269653--9269702	22	2.2	22	89	3	73	46	2	2	50	1.24
9270670--9270732	16	3.9	16	82	0	63	39	1	7	50	1.41
9271817--9271859	15	2.8	16	82	7	61	20	6	11	60	1.54
9272843--9272912	36	1.9	36	97	0	131	40	21	7	31	1.80
9273634--9273658	11	2.3	11	100	0	50	36	0	0	64	0.94
9273596--9273816	117	1.9	117	79	1	246	38	9	11	41	1.73
9273904--9273935	10	3.1	10	91	8	55	18	3	0	78	0.89
9282589--9282624	2	18.5	2	88	5	56	50	2	0	47	1.15
9286775--9286840	3	21.3	3	83	6	78	66	0	3	30	1.06
9286775--9286838	28	2.3	28	91	0	101	67	0	3	29	1.06
9286885--9286963	26	3.1	25	76	10	79	29	25	29	16	1.97
9286890--9286961	25	2.8	27	77	12	80	31	23	26	18	1.97
9287109--9287877	119	6.5	118	77	6	581	45	15	20	18	1.85
9287109--9287568	238	1.9	238	86	0	650	45	15	20	18	1.85
9287109--9287621	238	2.2	238	83	3	640	45	15	20	18	1.85
9288849--9288886	13	3.0	13	80	3	51	18	0	5	76	0.97
9289462--9289640	53	3.4	53	80	9	204	55	7	12	25	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9293962--9294012	2	25.5	2	100	0	102	49	0	0	50	1.00
9294173--9294219	25	1.9	24	83	12	60	48	4	0	46	1.21
9294277--9294322	18	2.6	19	81	18	55	50	2	0	47	1.13
9295563--9295607	23	2.0	23	82	8	56	11	8	2	77	1.07
9295728--9295765	20	1.9	20	94	0	67	36	10	23	28	1.88
9300496--9301053	189	3.0	186	83	8	697	45	7	7	39	1.61
9304004--9304082	34	2.3	35	82	4	88	53	5	5	36	1.45
9309281--9309369	27	3.1	27	62	22	65	37	12	6	43	1.69
9309217--9309620	117	3.4	116	88	6	577	34	11	8	45	1.71
9309646--9309682	10	3.7	10	86	13	58	78	0	0	21	0.75
9309642--9309768	20	5.8	21	69	25	77	74	3	3	18	1.12
9309641--9309683	7	6.1	7	78	10	52	79	0	0	20	0.74
9309641--9309711	10	7.4	9	71	16	54	78	1	2	16	0.94
9309641--9309711	28	2.6	27	79	16	76	78	1	2	16	0.94
9310631--9310690	23	2.6	23	82	12	77	68	1	6	23	1.22
9310628--9310781	57	2.7	57	72	18	140	67	1	5	24	1.23
9311074--9311113	1	40.0	1	94	0	71	0	2	0	97	0.17
9311193--9311279	1	87.0	1	76	0	84	1	2	8	88	0.65
9311193--9311279	10	8.8	10	83	9	108	1	2	8	88	0.65
9311193--9311279	39	2.2	40	89	6	133	1	2	8	88	0.65
9311285--9311684	200	2.0	201	91	6	652	37	21	18	22	1.94
9311285--9311684	39	10.0	39	89	9	610	37	21	18	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9312933--9312975	10	4.3	10	78	0	50	2	16	0	81	0.79
9312933--9312981	11	4.6	11	73	17	50	2	18	0	79	0.83
9312925--9312971	20	2.3	21	96	3	87	4	19	0	76	0.95
9312916--9312990	30	2.5	30	83	12	84	6	17	0	76	1.00
9316805--9317216	57	7.0	57	86	9	542	33	12	8	45	1.71
9317322--9317373	17	3.3	16	79	17	56	75	3	0	21	0.97
9317322--9317364	14	2.8	15	82	13	52	74	4	0	20	1.00
9317337--9317391	18	3.1	17	78	5	56	81	3	1	12	0.89
9317344--9317394	21	2.5	20	77	6	57	84	3	1	9	0.83
9317721--9317766	19	2.3	20	85	3	58	30	21	26	21	1.99
9325120--9325160	15	2.9	15	85	7	50	48	0	2	48	1.14
9328786--9328815	16	1.9	15	93	6	51	73	0	6	20	1.05
9329356--9329389	18	1.9	18	88	5	52	55	11	8	23	1.63
9331903--9331960	30	1.9	31	85	3	82	17	5	5	72	1.22
9332095--9332263	93	1.8	93	81	10	211	44	10	5	39	1.62
9336180--9336235	25	2.2	25	96	0	103	37	10	19	32	1.86
9336369--9336859	144	3.4	140	77	10	417	30	11	15	43	1.81
9337931--9337975	24	1.9	23	86	4	63	26	11	2	60	1.42
9338407--9338465	17	3.5	16	76	13	57	15	1	37	45	1.56
9338435--9338521	24	3.5	24	78	9	86	14	1	37	45	1.53
9338403--9338538	43	3.1	43	78	14	129	13	1	36	47	1.53
9338436--9338533	50	2.0	50	86	8	137	15	1	35	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9338511--9338564	23	2.3	23	84	9	65	9	0	38	51	1.34
9338551--9338639	34	2.5	35	91	8	137	15	0	41	42	1.47
9340849--9340888	3	13.7	3	94	5	73	35	0	0	65	0.93
9342195--9342242	21	2.4	19	78	21	53	6	31	12	50	1.65
9343097--9343136	15	2.7	15	84	0	53	0	2	15	82	0.77
9343214--9343470	62	4.1	62	77	12	254	42	17	11	28	1.84
9343594--9343658	22	3.0	23	80	8	73	26	18	24	30	1.98
9343715--9343855	50	2.8	50	86	5	169	33	16	14	36	1.89
9344367--9344422	21	2.5	22	85	5	69	8	12	3	75	1.17
9344383--9344411	13	2.1	14	93	6	51	13	13	0	72	1.13
9361079--9361147	34	2.0	34	97	0	129	47	15	8	27	1.75
9364484--9364517	17	1.9	18	94	5	61	70	17	2	8	1.25
9365671--9365743	18	3.8	18	78	8	74	78	2	15	4	1.02
9366089--9366114	10	2.6	10	100	0	52	92	0	7	0	0.39
9369722--9369786	9	7.0	9	79	11	69	4	12	1	81	0.91
9369721--9369778	10	5.9	10	77	6	57	3	12	1	82	0.86
9369719--9369785	11	6.2	11	73	1	55	4	10	1	83	0.85
9371802--9371837	3	12.0	3	100	0	72	33	33	0	33	1.58
9376456--9376630	35	5.0	35	81	4	160	27	14	14	42	1.85
9376460--9376637	70	2.6	70	81	5	200	27	13	15	43	1.84
9379760--9381206	258	5.6	258	76	9	972	38	8	10	43	1.68
9379699--9381206	131	11.7	130	75	7	924	38	7	10	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9379811--9381305	650	2.3	645	83	4	1710	38	8	10	43	1.69
9383262--9383308	23	2.0	23	100	0	94	34	10	8	46	1.69
9384271--9384296	12	2.2	12	100	0	52	38	7	23	30	1.83
9389513--9389554	22	1.9	22	90	0	66	38	19	16	26	1.92
9391471--9391510	21	1.9	21	85	10	55	22	5	2	70	1.19
9391496--9391539	19	2.3	20	85	14	58	15	11	0	72	1.11
9391491--9391539	19	2.7	18	79	20	57	16	10	0	73	1.09
9393924--9394056	5	25.8	5	73	13	60	34	6	2	57	1.36
9394011--9394052	3	14.3	3	85	14	61	30	0	0	69	0.89
9399802--9399844	11	3.6	12	87	9	61	79	2	13	4	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190