genome.fa.s223.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  35  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6118728--6118779	1	52.0	1	78	0	50	3	1	5	88	0.68
6118728--6118776	13	3.8	13	85	15	59	4	2	6	87	0.72
6118728--6118777	14	3.8	13	76	7	57	4	2	6	88	0.70
6119114--6119207	37	2.5	37	84	8	111	46	10	5	37	1.61
6121473--6121515	21	2.0	23	86	9	63	37	0	6	55	1.27
6121571--6121600	9	3.3	9	95	0	51	86	0	10	3	0.67
6122056--6122435	193	2.0	193	91	2	620	37	9	15	38	1.79
6133910--6134476	46	11.8	47	81	7	606	28	12	23	35	1.92
6133910--6134592	142	4.7	142	80	9	668	27	12	23	36	1.91
6133910--6134481	290	2.0	285	87	5	821	27	12	23	36	1.91
6134478--6134507	13	2.3	13	94	0	51	26	3	20	50	1.64
6135041--6135122	23	3.6	23	98	0	155	30	19	24	25	1.98
6136545--6136934	193	2.0	195	93	4	664	37	11	14	36	1.82
6137769--6137856	18	4.7	18	74	12	79	78	4	12	4	1.06
6137769--6137884	19	6.1	19	72	15	87	76	4	13	5	1.10
6137769--6137884	9	12.0	10	65	24	54	76	4	13	5	1.10
6137764--6137856	39	2.5	34	80	14	96	78	4	12	4	1.05
6138878--6139071	100	1.9	100	83	4	248	38	8	11	41	1.71
6138899--6139131	50	4.7	49	82	8	235	36	10	9	42	1.73
6138902--6139131	100	2.3	97	83	6	268	36	10	10	42	1.74
6138805--6139095	150	1.9	150	80	5	338	35	8	11	43	1.72
6139499--6139544	19	2.4	19	88	0	65	41	26	6	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6141644--6141693	19	2.7	19	81	6	59	68	4	6	22	1.29
6142683--6142708	10	2.6	10	100	0	52	46	0	0	53	1.00
6144041--6144071	10	3.1	10	95	0	53	54	0	6	38	1.26
6147309--6147674	134	2.7	134	76	5	326	28	13	19	38	1.90
6150223--6150277	28	1.9	28	82	10	67	43	14	5	36	1.69
6156084--6156397	173	1.8	174	84	4	429	36	14	10	38	1.80
6157677--6157925	80	3.1	80	84	1	320	25	8	22	42	1.82
6161352--6162267	304	3.0	295	83	4	1018	36	15	14	32	1.88
6169862--6169917	19	2.9	19	81	5	67	75	0	23	1	0.90
6169858--6169905	15	3.2	16	82	14	66	79	0	20	0	0.74
6169862--6169892	9	3.3	9	95	4	53	77	0	22	0	0.77
6169861--6169905	5	9.2	5	81	13	58	80	0	20	0	0.72
6169982--6170020	19	2.1	19	85	0	51	30	2	12	53	1.52
6170597--6170642	19	2.4	20	82	10	60	71	0	2	26	0.97
6173850--6173896	12	4.1	11	83	10	51	34	0	8	57	1.29
6174379--6174407	8	3.8	8	95	4	51	37	0	0	62	0.96
6179679--6179709	7	4.6	7	92	8	55	74	0	0	25	0.82
6179680--6179708	13	2.2	13	100	0	58	72	0	0	27	0.85
6180100--6180133	15	2.2	15	89	5	50	38	0	0	61	0.96
6180447--6180723	105	2.6	106	82	1	322	37	8	11	42	1.73
6188365--6188420	11	5.1	11	100	0	112	73	8	0	17	1.08
6188322--6188445	6	20.5	6	74	21	64	75	4	2	17	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6188400--6188445	19	2.5	19	83	13	53	80	4	2	13	0.95
6188697--6188772	31	2.5	31	84	0	107	55	15	5	23	1.61
6189278--6189433	3	56.3	3	68	22	83	60	1	4	33	1.28
6189278--6189433	13	11.3	15	66	21	83	60	1	4	33	1.28
6189317--6189427	5	21.8	5	83	7	102	57	2	3	36	1.30
6189278--6189433	15	9.4	17	75	13	107	60	1	4	33	1.28
6192567--6192696	59	2.2	60	88	2	190	30	13	14	42	1.84
6192750--6192816	35	1.9	35	87	0	98	49	22	4	23	1.68
6192954--6193259	64	4.8	64	70	9	232	34	15	14	35	1.87
6192906--6193259	125	2.8	126	84	3	435	36	13	14	35	1.86
6196325--6196362	19	2.0	19	94	0	67	23	5	15	55	1.61
6202182--6202242	17	3.5	17	74	12	61	32	1	16	49	1.56
6202177--6202247	35	2.0	35	97	0	133	35	2	16	45	1.63
6203410--6203454	23	2.0	23	86	8	65	28	8	17	44	1.79
6204691--6204732	22	2.0	22	86	13	61	40	21	11	26	1.88
6207318--6207380	24	2.6	24	77	5	65	26	19	15	38	1.92
6207735--6207798	24	2.7	24	82	0	65	25	7	17	50	1.72
6208452--6208486	15	2.4	14	90	9	61	65	5	2	25	1.28
6208451--6208507	23	2.5	23	72	8	55	66	8	1	22	1.29
6211402--6211440	11	3.5	11	82	0	51	12	7	12	66	1.43
6218987--6219028	21	2.0	22	85	4	59	71	2	26	0	0.98
6218991--6219043	14	3.3	15	80	15	54	75	1	22	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6221009--6221055	24	2.0	24	83	8	60	19	8	10	61	1.53
6224838--6224897	18	3.4	18	76	4	68	50	1	1	46	1.21
6225014--6225052	20	2.0	20	84	0	51	48	0	0	51	1.00
6225071--6225118	20	2.3	21	78	7	53	31	0	10	58	1.32
6225113--6225188	18	3.9	19	73	8	64	28	3	1	65	1.18
6225156--6225216	19	3.1	19	71	13	52	26	0	6	67	1.15
6225196--6225262	8	7.9	8	73	15	55	28	1	2	67	1.14
6225158--6225273	28	4.2	26	73	25	89	30	0	4	64	1.18
6225224--6225272	25	1.9	26	95	4	91	30	0	2	67	1.02
6225219--6225288	36	2.0	34	86	5	95	32	1	1	64	1.11
6225230--6225334	26	4.0	26	75	8	77	36	1	2	59	1.23
6235604--6235669	30	2.2	31	83	8	82	25	6	9	59	1.51
6236116--6236167	15	3.5	15	82	7	54	21	1	15	61	1.43
6243837--6243861	13	1.9	13	100	0	50	16	8	8	68	1.38
6244010--6244048	21	2.0	20	90	10	62	20	7	0	71	1.10
6245944--6245973	10	3.1	10	95	4	53	90	10	0	0	0.47
6245944--6245973	9	3.2	9	90	9	51	90	10	0	0	0.47
6247011--6247075	28	2.4	29	82	12	84	70	6	3	20	1.22
6248207--6248269	22	2.8	22	81	9	65	80	6	1	11	0.95
6248216--6248256	16	2.7	14	82	17	55	85	7	2	4	0.81
6254378--6254776	59	6.8	58	78	9	387	38	8	6	47	1.58
6255135--6255178	21	2.0	22	91	4	72	0	38	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6255764--6255803	16	2.7	14	82	14	53	65	2	5	27	1.27
6255833--6255864	15	2.2	14	94	5	55	84	3	0	12	0.74
6255837--6255917	15	5.1	15	73	16	56	69	3	2	24	1.17
6255936--6255973	7	5.4	7	81	12	51	71	0	0	28	0.87
6256169--6256374	42	4.8	42	82	8	229	38	21	14	24	1.91
6256166--6256380	85	2.5	84	85	5	288	39	20	14	24	1.91
6257362--6257417	11	5.2	11	78	4	51	5	10	0	83	0.78
6257351--6257417	27	2.6	25	78	15	73	7	11	0	80	0.90
6265194--6265229	18	1.9	19	88	5	56	63	2	5	27	1.30
6265799--6265965	60	2.8	61	84	7	223	37	11	4	45	1.62
6265972--6266040	16	4.0	17	72	24	56	76	1	4	17	1.02
6266357--6266400	21	2.0	22	91	4	72	0	47	0	52	1.00
6266536--6266594	31	1.9	31	82	6	75	50	18	8	22	1.73
6266937--6267045	21	5.2	20	70	16	69	66	4	4	24	1.30
6267033--6267062	16	1.9	15	93	6	51	60	3	6	30	1.39
6267098--6267252	7	24.0	6	70	14	64	71	3	2	22	1.13
6267100--6267177	15	5.1	15	78	15	54	71	2	1	24	1.06
6267187--6267234	18	2.8	17	79	17	55	75	0	0	25	0.81
6267338--6267388	15	3.4	14	82	12	57	13	5	21	58	1.56
6268014--6268072	3	19.7	3	92	0	100	62	0	33	3	1.12
6277232--6277281	15	3.3	16	78	13	61	18	0	28	54	1.44
6277716--6277815	13	7.9	12	70	11	67	13	4	4	79	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6277767--6277816	9	5.8	8	80	17	55	14	2	2	82	0.86
6277934--6277980	18	2.7	18	83	3	60	21	4	12	61	1.48
6278196--6278260	26	2.5	26	92	0	112	29	6	16	47	1.71
6282250--6282275	3	8.7	3	100	0	52	30	0	0	69	0.89
6282352--6282419	23	3.0	23	85	10	86	70	2	8	17	1.25
6282800--6282848	17	2.9	17	78	0	53	42	10	8	38	1.68
6282834--6282892	18	3.2	18	83	7	66	27	15	15	42	1.86
6282917--6283033	32	3.7	31	84	5	146	39	13	6	40	1.72
6283016--6283054	16	2.5	15	87	4	51	43	15	10	30	1.80
6283333--6283371	20	2.0	20	89	0	60	35	17	7	38	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190