genome.fa.s223.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  80  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12949776--12949828	26	2.0	26	92	0	88	28	24	18	28	1.98
12948112--12952326	895	4.7	898	87	2	5693	25	24	24	25	2.00
12951570--12951621	26	2.0	26	92	0	86	28	25	19	26	1.98
12953989--12954041	26	2.0	26	96	0	97	28	26	18	26	1.98
12952390--12955130	889	3.1	889	87	2	3739	25	24	24	25	2.00
12954875--12954930	26	2.2	26	90	0	85	32	23	17	26	1.97
12954333--12955932	802	2.0	799	88	2	2377	25	25	24	25	2.00
12955132--12957380	901	2.5	902	86	2	3133	26	25	22	25	2.00
12959636--12959688	26	2.0	26	89	7	81	26	24	20	28	1.99
12960539--12960591	26	2.0	26	96	0	97	28	26	18	26	1.98
12958250--12964084	903	6.5	900	85	3	7419	26	24	23	25	2.00
12962361--12962412	26	2.0	26	88	0	77	30	23	17	28	1.97
12963259--12963311	26	2.0	26	96	0	97	28	26	18	26	1.98
12966019--12966071	26	2.0	26	100	0	106	26	16	26	30	1.97
12966906--12966958	26	2.0	26	96	0	97	26	13	24	35	1.92
12965350--12969106	891	4.2	886	84	6	4714	24	24	25	25	2.00
12968676--12968728	26	2.0	26	100	0	106	26	20	26	26	1.99
12967406--12969913	807	3.0	807	72	16	1988	25	25	25	24	2.00
12969911--12969961	26	2.0	26	84	0	66	23	13	11	50	1.74
12971135--12971187	26	2.0	26	92	0	88	26	18	24	30	1.98
12972040--12972090	26	2.0	26	92	0	84	27	15	29	27	1.96
12972088--12972158	32	2.2	32	89	0	106	18	19	39	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12972559--12972611	26	2.0	26	92	0	88	26	26	18	28	1.98
12973499--12973865	183	2.0	182	84	4	472	20	23	33	22	1.97
12973682--12975134	715	2.0	719	89	1	2198	26	23	22	26	2.00
12975464--12978104	907	2.9	890	85	3	3516	26	24	23	24	2.00
12979503--12979555	26	2.0	26	89	7	81	28	26	16	28	1.97
12980404--12980454	26	2.0	26	96	0	93	25	25	19	29	1.99
12978630--12981940	902	3.7	897	85	2	4354	26	23	23	25	2.00
12981307--12981359	26	2.0	26	92	0	88	26	22	24	26	2.00
12982013--12982065	26	2.0	26	92	0	88	30	24	15	30	1.95
12982918--12982970	26	2.0	26	92	0	88	28	24	20	26	1.99
12983727--12983763	14	2.6	14	95	0	65	8	35	35	21	1.83
12985216--12985268	26	2.0	26	92	0	88	26	26	20	26	1.99
12985335--12985371	14	2.6	14	95	0	65	8	35	35	21	1.83
12986134--12986184	26	2.0	26	92	0	84	27	25	17	29	1.98
12985197--13002741	902	19.4	890	78	9	14428	25	24	24	24	2.00
12987037--12987089	26	2.0	26	88	0	79	28	20	22	28	1.99
12987063--13000472	867	15.0	865	78	10	11327	25	24	24	24	2.00
12990565--12990617	26	2.0	26	92	0	88	28	24	20	26	1.99
12990794--12990844	26	2.0	26	96	0	93	27	23	21	27	1.99
12992359--12992408	26	1.9	26	95	0	91	28	26	18	28	1.98
12993247--12993299	26	2.0	26	88	0	79	24	24	22	28	2.00
12994126--12994178	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12995030--12995082	26	2.0	26	96	0	97	28	26	18	26	1.98
12996141--12996191	15	3.4	15	97	0	93	29	7	35	27	1.85
12996869--12996921	26	2.0	26	92	0	88	28	24	18	28	1.98
12998645--12998697	26	2.0	26	96	0	97	28	26	18	26	1.98
12997782--13000470	895	3.0	893	89	2	4080	25	25	24	24	2.00
12999540--12999590	26	2.0	26	96	0	93	25	29	17	27	1.98
13000264--13000585	159	2.0	158	83	4	398	19	30	28	21	1.98
13002364--13002416	26	2.0	26	96	0	97	28	26	18	26	1.98
13000583--13002741	899	2.4	888	86	3	3062	25	25	24	25	2.00
13003982--13004034	26	2.0	26	92	0	88	26	28	18	26	1.98
13004820--13004872	26	2.0	26	96	0	97	26	24	20	28	1.99
13005723--13005775	26	2.0	26	96	0	97	26	26	18	28	1.98
13004629--13010642	879	6.7	903	86	4	7792	25	24	23	25	2.00
13010905--13016259	868	6.1	868	83	5	6423	25	23	24	25	2.00
13014610--13014662	26	2.0	26	85	7	72	30	16	22	30	1.96
13015510--13015562	26	2.0	26	96	0	97	28	20	24	26	1.99
13012874--13016258	901	3.8	898	85	3	4203	25	23	24	26	2.00
13019714--13019766	26	2.0	26	96	0	97	32	20	20	26	1.98
13020611--13020663	26	2.0	26	92	7	90	28	18	22	30	1.98
13019086--13021694	898	2.9	891	85	4	3368	25	23	23	26	2.00
13021483--13021535	26	2.0	26	92	0	88	28	20	22	28	1.99
13021454--13021879	185	2.3	185	85	1	550	22	27	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13022558--13022610	26	2.0	26	92	0	88	24	18	28	28	1.98
13023461--13023513	26	2.0	26	96	0	97	26	18	26	28	1.98
13021661--13023690	903	2.3	892	88	2	3007	25	24	24	25	2.00
13023487--13023904	159	2.6	159	81	1	489	23	28	29	18	1.98
13025873--13025925	26	2.0	26	92	0	88	26	16	26	30	1.97
13026761--13026813	26	2.0	26	96	0	97	28	20	24	26	1.99
13027656--13027708	26	2.0	26	96	0	97	28	20	24	26	1.99
13025535--13028193	895	3.0	892	84	4	3593	25	23	24	26	2.00
13029407--13029459	26	2.0	26	88	0	79	28	16	24	30	1.97
13032016--13032068	26	2.0	26	96	0	97	28	20	24	26	1.99
13032913--13032965	26	2.0	26	85	0	70	30	20	22	26	1.98
13033811--13033863	27	2.0	27	88	0	79	26	16	24	32	1.97
13028191--13037050	869	10.1	871	84	6	9886	25	23	24	25	2.00
13038104--13038156	26	2.0	26	100	0	106	26	20	26	26	1.99
13040766--13040818	26	2.0	26	100	0	106	26	20	26	26	1.99
13037232--13046296	905	10.2	901	86	4	11815	25	24	24	25	2.00
13042564--13042615	26	2.0	26	88	3	79	28	21	25	25	1.99
13044346--13044396	26	2.0	26	92	0	84	29	17	25	27	1.98
13046118--13046170	26	2.0	26	92	0	88	28	18	24	28	1.98
13046974--13047024	26	2.0	26	88	7	77	29	15	25	29	1.96
13050501--13050551	26	2.0	26	88	7	77	29	15	25	29	1.96
13054025--13054077	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13057470--13057520	26	2.0	26	96	0	93	27	25	15	31	1.96
13058316--13058368	26	2.0	26	100	0	106	26	26	20	26	1.99
13057366--13059892	846	2.9	861	86	4	3464	25	24	24	25	2.00
13059204--13059256	26	2.0	26	96	0	97	28	26	18	26	1.98
13060106--13060158	26	2.0	26	96	0	97	28	26	18	26	1.98
13060834--13060886	26	2.0	26	96	0	97	28	26	18	26	1.98
13060860--13065266	875	5.0	874	86	5	5700	25	24	24	25	2.00
13063478--13063530	26	2.0	26	96	0	97	28	24	20	26	1.99
13062614--13065378	881	3.1	883	86	4	3775	25	25	24	25	2.00
13064361--13064412	26	2.0	26	96	0	95	32	23	17	26	1.96
13065240--13065292	26	2.0	26	100	0	106	26	26	20	26	1.99
13066879--13066910	11	2.9	11	95	0	55	21	28	25	25	1.99
13065710--13069288	879	4.1	874	86	3	4803	25	25	24	25	2.00
13070999--13071051	26	2.0	26	92	0	88	30	26	18	24	1.98
13071889--13071941	26	2.0	26	92	0	88	28	24	20	26	1.99
13069233--13072580	890	3.8	892	90	2	5077	25	24	24	25	2.00
13073424--13073476	26	2.0	26	96	0	97	28	26	18	26	1.98
13074309--13074360	26	2.0	26	92	0	86	26	23	19	30	1.98
13072963--13076320	898	3.8	892	84	5	4217	25	24	24	25	2.00
13075183--13075235	26	2.0	26	96	0	97	28	26	18	26	1.98
13078101--13078159	26	2.2	27	78	3	66	61	8	6	23	1.49
13078529--13078581	26	2.0	26	85	0	70	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13078515--13078882	183	2.0	184	85	2	499	19	23	30	26	1.98
13078712--13078761	26	1.9	26	91	0	82	22	26	22	30	1.99
13079582--13079634	26	2.0	26	92	0	88	26	26	20	26	1.99
13082877--13082929	26	2.0	26	88	0	79	28	22	20	28	1.99
13080358--13084322	893	4.4	898	85	3	5038	26	24	23	25	2.00
13083775--13083827	26	2.0	26	85	7	72	26	26	18	28	1.98
13080358--13084322	890	4.4	898	85	3	5127	26	24	23	25	2.00
13084510--13084562	26	2.0	26	92	0	88	26	26	22	24	2.00
13087195--13087247	26	2.0	26	100	0	106	26	26	20	26	1.99
13088100--13088150	26	2.0	26	100	0	102	31	23	15	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190