genome.fa.s223.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  98  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15452906--15466733	863	15.9	862	84	6	15167	25	24	23	25	2.00
15456380--15456432	26	2.0	26	89	7	81	28	26	16	28	1.97
15457279--15457346	26	2.6	26	97	0	127	27	25	19	27	1.98
15458117--15458184	26	2.6	26	92	0	118	27	23	19	29	1.98
15459820--15459872	26	2.0	26	100	0	106	26	26	20	26	1.99
15458949--15466760	885	8.9	883	85	6	8996	25	24	23	25	2.00
15460705--15460757	26	2.0	26	100	0	106	26	26	20	26	1.99
15463337--15463389	26	2.0	26	88	0	79	30	24	18	26	1.98
15465092--15465142	26	2.0	26	100	0	102	25	27	19	27	1.99
15465966--15467475	715	2.1	715	87	2	2178	27	23	23	26	2.00
15467579--15467631	26	2.0	26	88	0	79	30	28	16	24	1.97
15469262--15469314	26	2.0	26	92	0	88	28	24	18	28	1.98
15466681--15474369	878	8.9	867	80	9	7957	26	23	24	25	2.00
15471886--15471938	26	2.0	26	88	0	79	30	24	16	28	1.97
15473604--15475099	708	2.1	704	88	2	2192	26	23	22	26	2.00
15475204--15475253	26	1.9	26	87	0	73	22	22	22	34	1.97
15474341--15479259	901	5.5	897	86	4	6151	25	24	24	25	2.00
15477912--15477961	26	1.9	26	95	0	91	26	26	16	32	1.96
15478806--15478858	26	2.0	26	92	0	88	26	26	22	24	2.00
15478998--15479552	292	1.9	293	93	0	950	30	22	16	30	1.96
15479963--15480015	26	2.0	26	89	7	81	28	20	20	30	1.98
15479267--15483475	902	4.7	898	87	3	5695	26	25	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15484075--15484140	26	2.5	26	97	0	123	24	27	21	27	1.99
15485902--15485954	26	2.0	26	100	0	106	26	26	20	26	1.99
15483482--15488787	893	5.9	891	84	6	6208	25	24	24	25	2.00
15486555--15486849	159	1.9	159	86	2	423	19	31	27	20	1.97
15486853--15488780	920	2.1	919	85	5	2547	25	24	24	25	2.00
15489054--15489106	26	2.0	26	100	0	106	30	26	16	26	1.97
15488323--15489262	468	2.0	469	85	2	1280	19	28	28	23	1.98
15490321--15490370	26	1.9	26	95	0	91	28	18	26	28	1.98
15489386--15500341	903	12.3	896	85	4	13471	25	24	24	25	2.00
15492494--15492544	26	2.0	26	88	0	75	23	9	11	54	1.66
15492965--15493017	26	2.0	26	100	0	106	26	20	26	26	1.99
15493857--15493909	26	2.0	26	89	7	81	30	22	22	24	1.99
15495633--15495685	26	2.0	26	96	0	97	26	18	26	28	1.98
15499173--15499225	26	2.0	26	85	0	70	30	20	22	26	1.98
15500074--15500126	26	2.0	26	96	0	97	26	18	26	28	1.98
15500018--15500719	375	1.9	380	85	3	988	23	28	28	19	1.98
15501770--15501822	26	2.0	26	88	0	79	28	20	24	26	1.99
15502666--15502718	26	2.0	26	92	0	88	26	18	24	30	1.98
15503653--15506092	868	2.8	867	88	3	3491	26	24	23	25	2.00
15506754--15506806	26	2.0	26	88	0	79	26	18	24	30	1.98
15507651--15507703	26	2.0	26	92	0	88	28	20	22	28	1.99
15507994--15508046	26	2.0	26	92	0	88	28	16	26	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15507550--15508209	344	1.9	342	88	2	984	22	28	27	21	1.99
15508884--15508936	26	2.0	26	100	0	106	26	20	26	26	1.99
15509787--15509839	26	2.0	26	85	0	70	26	20	24	28	1.99
15507899--15513558	890	6.4	888	83	6	6859	25	24	25	25	2.00
15511549--15511599	26	2.0	26	92	0	84	27	11	29	31	1.92
15512432--15512484	26	2.0	26	88	0	79	28	20	24	26	1.99
15513317--15513367	26	2.0	26	100	0	102	27	19	25	27	1.99
15513343--15513717	159	2.4	158	84	1	455	20	28	29	20	1.98
15514370--15514422	26	2.0	26	96	0	97	28	20	24	26	1.99
15515259--15515311	26	2.0	26	92	0	88	26	16	26	30	1.97
15513501--15515543	888	2.3	888	88	2	3080	24	25	25	24	2.00
15515285--15515652	159	2.3	159	85	3	474	22	32	28	17	1.96
15518062--15518114	26	2.0	26	88	0	79	28	20	22	28	1.99
15515440--15520146	885	5.3	878	85	4	6061	25	24	25	25	2.00
15519849--15519901	26	2.0	26	92	0	88	30	20	22	26	1.98
15522595--15522647	26	2.0	26	96	0	97	28	20	24	26	1.99
15523497--15523549	26	2.0	26	96	0	97	28	20	24	26	1.99
15522912--15529057	900	7.0	833	76	12	3820	25	24	24	25	2.00
15523745--15529370	900	6.3	899	88	2	7938	25	23	24	26	2.00
15527907--15527959	26	2.0	26	96	0	97	26	18	26	28	1.98
15530884--15530936	26	2.0	26	92	0	88	24	24	24	26	2.00
15529374--15531315	901	2.2	901	87	2	2799	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15531589--15531641	26	2.0	26	96	0	97	28	26	18	26	1.98
15533193--15534023	433	1.9	433	90	1	1306	20	26	27	25	1.99
15535415--15535467	26	2.0	26	96	0	97	24	26	20	28	1.99
15537421--15537473	26	2.0	26	96	0	97	28	20	24	26	1.99
15537595--15539058	715	2.0	713	86	7	2024	26	23	22	26	2.00
15539039--15539091	26	2.0	26	96	0	97	28	20	24	26	1.99
15539931--15539983	26	2.0	26	88	0	79	28	20	22	28	1.99
15540826--15540878	26	2.0	26	88	0	79	30	18	22	28	1.98
15538295--15542968	892	5.3	892	84	6	5628	25	24	24	25	2.00
15541729--15541781	26	2.0	26	92	0	88	26	20	26	26	1.99
15543364--15543416	26	2.0	26	96	0	97	26	18	26	28	1.98
15543156--15543573	185	2.3	184	86	1	552	22	27	27	22	1.99
15545093--15545145	26	2.0	26	92	0	88	28	22	22	26	1.99
15544217--15546735	894	2.8	893	87	4	3597	25	23	25	26	2.00
15546024--15547456	735	2.0	724	88	2	2161	25	21	25	27	2.00
15547606--15547658	26	2.0	26	96	0	97	30	18	22	28	1.98
15546740--15550092	874	3.8	883	87	4	4645	25	24	24	25	2.00
15555358--15555410	26	2.0	26	92	0	88	26	18	24	30	1.98
15556248--15556300	26	2.0	26	92	0	88	28	18	26	26	1.98
15557528--15557580	26	2.0	26	92	7	90	30	26	16	26	1.97
15558428--15558480	26	2.0	26	96	0	97	26	24	20	28	1.99
15559309--15559361	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15556961--15560095	881	3.5	875	86	4	4286	26	24	23	25	2.00
15562488--15562540	26	2.0	26	96	0	97	28	30	16	24	1.97
15562107--15563771	829	2.0	833	87	1	2437	23	25	25	25	2.00
15565089--15565139	26	2.0	26	92	7	86	29	21	19	29	1.98
15566851--15566903	26	2.0	26	100	0	106	26	26	20	26	1.99
15562944--15576481	872	15.3	896	84	5	16513	25	24	24	25	2.00
15567749--15567801	26	2.0	26	96	0	97	28	26	18	26	1.98
15568658--15568707	26	1.9	26	95	0	91	24	30	18	28	1.97
15569550--15569602	26	2.0	26	96	0	97	28	26	18	26	1.98
15562944--15576481	905	15.3	899	84	5	16498	25	24	24	25	2.00
15575685--15575737	26	2.0	26	88	0	79	26	22	24	26	2.00
15575711--15577168	714	2.0	716	91	0	2373	26	23	24	25	2.00
15577298--15577350	26	2.0	26	85	0	70	24	24	20	30	1.99
15578196--15578248	26	2.0	26	96	0	97	26	24	20	28	1.99
15579097--15579149	26	2.0	26	88	0	79	28	20	20	30	1.98
15576426--15581797	877	6.0	899	86	3	6804	25	24	24	25	2.00
15580001--15580053	26	2.0	26	85	0	70	22	28	20	28	1.99
15582175--15582227	26	2.0	26	100	0	106	26	26	20	26	1.99
15583940--15583992	26	2.0	26	96	0	97	28	26	18	26	1.98
15584844--15584896	26	2.0	26	89	7	81	30	24	16	28	1.97
15586600--15586652	26	2.0	26	96	0	97	24	26	22	26	2.00
15588396--15588446	26	2.0	26	92	0	84	27	29	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15585735--15609581	894	26.8	894	83	5	27461	25	24	23	25	2.00
15590164--15590216	26	2.0	26	92	0	88	28	24	18	28	1.98
15591058--15591110	26	2.0	26	92	0	88	30	26	18	24	1.98
15591256--15591335	24	3.1	26	80	10	110	16	13	45	25	1.84
15591258--15591344	24	3.5	23	75	17	75	16	14	42	26	1.87
15591973--15592025	26	2.0	26	100	0	106	26	26	20	26	1.99
15595509--15595560	26	2.0	26	96	3	97	25	26	21	26	1.99
15598167--15598219	26	2.0	26	96	0	97	28	26	18	26	1.98
15599057--15599109	26	2.0	26	100	0	106	26	26	20	26	1.99
15596387--15609579	897	14.8	897	84	4	16154	25	24	23	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190