genome.fa.s223.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  180  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30400426--30400530	31	3.3	31	63	19	79	39	7	13	40	1.73
30405029--30405069	18	2.3	19	83	12	59	12	51	21	14	1.75
30405034--30405069	6	6.2	6	90	3	56	13	52	19	13	1.74
30408112--30408147	17	2.1	18	89	5	56	66	0	5	27	1.13
30418061--30418109	23	2.1	23	92	0	80	48	22	8	20	1.75
30422475--30422540	33	2.0	33	100	0	132	57	21	3	18	1.53
30424121--30424304	36	5.1	36	78	5	165	21	30	19	28	1.97
30425179--30425236	25	2.3	25	90	0	89	37	27	10	24	1.88
30430873--30430919	22	2.1	22	100	0	94	65	8	12	12	1.46
30434283--30434309	2	13.5	2	100	0	54	51	48	0	0	1.00
30436885--30436950	21	3.1	21	89	6	71	28	10	16	43	1.81
30436903--30436955	21	2.5	21	96	0	97	33	7	15	43	1.74
30437374--30437407	18	1.9	18	88	5	52	26	0	0	73	0.83
30439030--30439427	59	6.7	60	87	7	564	34	14	7	42	1.74
30439030--30439427	179	2.2	176	91	4	620	34	14	7	42	1.74
30439030--30439434	120	3.4	118	89	5	604	35	14	7	42	1.73
30442449--30442488	17	2.4	16	87	4	53	2	0	7	90	0.55
30442448--30442485	13	3.0	13	85	14	53	5	0	7	86	0.69
30442493--30442646	41	3.7	41	89	1	245	33	25	18	22	1.96
30442493--30442645	83	1.8	83	94	0	270	33	25	17	22	1.96
30442629--30442667	19	2.1	19	100	0	78	33	25	25	15	1.95
30442590--30442705	60	1.9	60	96	0	214	34	25	18	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30442505--30442792	143	2.0	144	93	0	497	35	23	19	22	1.96
30442546--30442749	102	2.0	102	95	1	365	34	24	19	21	1.96
30442648--30443129	41	11.7	41	89	5	699	37	21	18	22	1.94
30442648--30443129	125	3.9	123	88	6	699	37	21	18	22	1.94
30444350--30444417	7	9.3	7	77	15	50	4	17	0	77	0.92
30444383--30444408	11	2.4	11	100	0	52	0	7	0	92	0.39
30448199--30448481	59	4.7	59	85	6	349	34	13	7	44	1.71
30452332--30452379	25	2.0	25	87	4	71	37	6	14	41	1.71
30458034--30458062	2	14.5	2	100	0	58	48	0	51	0	1.00
30468449--30468477	2	14.5	2	100	0	58	48	0	0	51	1.00
30470017--30470083	33	2.1	32	88	2	98	38	19	14	26	1.91
30472684--30472832	75	2.0	75	90	0	235	45	14	18	21	1.85
30473553--30473634	41	2.0	41	92	0	137	57	14	13	14	1.66
30475946--30476257	159	2.0	159	96	1	572	30	25	11	33	1.91
30481100--30481127	2	14.0	2	100	0	56	50	0	50	0	1.00
30483657--30483712	28	2.0	27	89	3	85	23	3	16	57	1.55
30490823--30490905	27	3.0	28	79	8	91	61	1	0	37	1.04
30492058--30492123	8	8.6	8	73	15	59	37	0	0	62	0.96
30492109--30492163	23	2.3	25	93	6	96	43	0	0	56	0.99
30501710--30501779	35	2.0	34	97	0	113	34	7	2	55	1.42
30502041--30502075	18	1.9	18	88	0	52	37	0	8	54	1.31
30519608--30519915	30	10.0	30	72	11	97	31	50	2	15	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30519601--30519755	36	4.3	36	81	3	168	33	56	0	9	1.37
30519602--30519755	3	51.3	3	77	7	107	33	56	0	9	1.36
30519617--30519800	21	8.8	21	73	7	104	32	53	2	11	1.49
30519841--30519930	39	2.3	39	88	3	128	32	41	4	22	1.74
30529625--30529875	127	2.0	124	90	3	396	22	10	16	49	1.76
30531210--30531344	69	2.0	69	100	0	270	34	14	17	33	1.91
30535063--30535088	2	13.0	2	100	0	52	50	0	50	0	1.00
30535241--30535280	21	1.9	21	90	10	64	67	0	0	32	0.91
30535591--30535617	7	3.9	7	100	0	54	70	0	0	29	0.88
30545664--30545773	51	2.2	51	83	6	143	17	0	33	49	1.47
30545724--30545785	14	4.3	14	75	15	63	22	0	27	50	1.50
30545731--30545785	16	3.7	15	79	11	69	23	0	27	49	1.51
30545739--30545859	16	7.6	16	70	13	63	18	0	30	51	1.46
30545799--30545869	17	4.2	16	79	13	81	12	0	30	56	1.37
30545799--30545869	33	2.1	34	87	7	101	12	0	30	56	1.37
30546165--30546206	16	2.6	16	85	11	50	30	2	0	66	1.04
30546842--30546897	29	1.9	28	82	13	69	39	0	0	60	0.97
30546847--30546908	15	3.9	15	75	12	52	43	1	0	54	1.09
30547120--30547478	109	3.3	109	86	1	495	37	16	20	25	1.93
30547441--30547546	22	4.8	23	79	3	94	29	20	22	27	1.99
30547449--30547550	23	4.6	22	79	14	86	31	19	21	27	1.97
30547441--30547550	44	2.5	45	85	5	145	30	20	22	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30547610--30547661	23	2.2	24	79	6	61	34	19	17	28	1.94
30547533--30547770	110	2.2	110	86	3	327	36	19	21	21	1.95
30547230--30548053	286	2.9	285	81	4	896	36	18	20	24	1.94
30547754--30547805	23	2.4	22	80	6	61	28	25	25	21	1.99
30547823--30548141	109	2.9	108	79	7	358	39	16	19	24	1.92
30548027--30548222	88	2.2	87	87	0	293	37	18	22	21	1.94
30548202--30548269	23	3.0	22	82	2	82	33	23	19	23	1.97
30548130--30548383	133	1.9	133	95	0	454	36	20	22	20	1.95
30548335--30548377	22	2.0	22	90	0	68	30	20	23	25	1.99
30547796--30548495	110	6.4	110	73	11	533	37	19	21	22	1.95
30548453--30548516	21	3.0	21	86	4	83	28	23	23	25	2.00
30548365--30548624	131	2.0	130	87	3	371	36	18	21	23	1.95
30548481--30548691	108	2.0	108	86	3	300	39	15	20	24	1.91
30548484--30548726	108	2.2	108	83	6	296	37	16	19	25	1.93
30548610--30548858	132	1.9	132	84	3	340	36	17	20	24	1.94
30548816--30548886	22	3.2	22	85	0	97	29	21	23	25	1.99
30550923--30550978	18	3.2	17	85	7	69	1	1	10	85	0.74
30550932--30550980	25	2.0	24	88	4	71	4	2	8	85	0.79
30555460--30555497	15	2.5	15	91	0	67	23	13	36	26	1.91
30557067--30557095	14	2.0	15	93	6	51	41	3	0	55	1.17
30557535--30557648	51	2.3	51	82	10	137	18	0	31	50	1.47
30557602--30557656	16	3.7	15	79	11	69	23	0	27	49	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30557593--30557714	16	7.9	16	70	14	62	21	0	30	47	1.56
30557600--30557656	14	3.9	14	74	17	62	24	0	28	47	1.52
30557670--30557740	17	4.2	16	79	13	56	15	2	29	52	1.57
30562028--30562082	25	2.2	24	87	6	83	41	14	23	20	1.89
30562288--30562329	22	1.9	22	90	0	66	50	9	7	33	1.62
30565632--30565661	12	2.5	12	88	0	51	40	3	56	0	1.16
30572635--30572682	13	3.5	13	78	10	60	37	0	6	56	1.25
30572622--30572682	28	2.3	27	83	11	72	40	0	4	54	1.22
30578842--30578883	16	2.5	17	84	7	59	47	2	0	50	1.14
30581845--30581878	15	2.2	16	89	5	52	61	8	0	29	1.26
30588709--30588765	12	4.5	12	82	10	53	33	1	0	64	1.04
30588976--30589004	14	2.0	15	93	6	51	27	17	20	34	1.95
30589061--30589114	28	1.9	28	84	0	72	22	22	20	35	1.96
30595713--30595761	24	2.0	24	88	0	71	16	12	16	55	1.70
30597102--30597152	22	2.3	23	80	10	61	43	5	0	50	1.26
30597250--30597314	34	1.9	34	87	0	94	43	6	6	44	1.54
30597370--30597445	28	2.8	27	88	4	107	59	5	3	31	1.38
30597436--30597500	28	2.4	27	86	2	85	38	3	4	53	1.37
30597490--30597520	2	15.5	2	100	0	62	48	0	0	51	1.00
30598398--30598431	15	2.2	16	89	5	52	61	8	0	29	1.26
30606078--30606228	75	2.0	75	97	0	284	26	21	11	39	1.88
30611293--30611343	22	2.3	23	80	10	61	43	5	0	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30611562--30611637	28	2.8	26	88	5	107	60	3	3	31	1.33
30611628--30611692	28	2.4	28	92	2	105	36	3	3	56	1.30
30612052--30612095	18	2.4	19	85	7	56	50	0	2	47	1.13
30612221--30612286	31	2.3	27	77	20	80	37	6	3	53	1.41
30612230--30612298	31	2.2	31	100	0	138	43	7	2	46	1.46
30612609--30612642	15	2.2	16	89	5	52	61	8	0	29	1.26
30625018--30625075	26	2.2	27	82	11	68	46	0	5	48	1.24
30625539--30625603	34	1.9	34	87	0	94	43	6	6	44	1.54
30625659--30625734	28	2.8	27	88	4	107	59	5	3	31	1.38
30625726--30625795	28	2.4	29	84	11	99	35	4	4	55	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190