genome.fa.s223.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  182  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30903695--30903720	2	13.0	2	100	0	52	50	0	0	50	1.00
30905886--30905946	30	2.0	30	96	0	113	40	18	19	21	1.91
30905964--30906003	2	21.0	2	85	10	57	47	2	0	50	1.14
30906117--30906167	26	1.9	26	88	4	75	41	0	7	50	1.31
30906797--30906833	2	18.5	2	100	0	74	51	0	0	48	1.00
30906981--30907016	18	1.9	19	88	5	56	44	0	13	41	1.44
30906981--30907020	19	2.0	20	86	13	57	45	0	12	42	1.42
30907901--30907927	13	2.1	13	100	0	54	22	25	7	44	1.79
30910837--30910895	32	1.9	29	86	10	82	66	5	10	18	1.40
30911816--30911961	52	2.8	52	84	2	186	28	19	6	45	1.76
30911982--30912028	11	4.3	11	81	10	51	48	29	0	21	1.50
30912281--30912325	18	2.5	19	78	7	58	71	2	0	26	0.98
30913555--30913608	22	2.5	21	77	19	58	53	0	0	46	1.00
30913555--30913591	19	2.0	20	84	10	51	48	0	0	51	1.00
30913566--30913609	22	1.9	24	86	9	65	52	0	0	47	1.00
30916017--30916073	29	2.0	29	89	6	89	52	1	8	36	1.43
30923178--30923214	2	18.0	2	94	5	65	48	0	2	48	1.15
30924408--30924432	1	25.0	1	100	0	50	100	0	0	0	0.00
30926728--30926767	21	1.9	21	89	0	62	65	0	0	35	0.93
30928393--30928463	29	2.5	29	79	2	72	28	8	11	52	1.66
30929169--30929236	35	1.9	36	82	14	88	35	4	1	58	1.27
30929384--30929443	23	2.7	23	79	5	61	45	0	6	48	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30946793--30946857	23	3.0	20	73	10	58	66	0	0	33	0.92
30946817--30946848	16	1.9	17	93	6	57	71	0	0	28	0.86
30947645--30947688	22	2.0	22	90	0	70	43	6	9	40	1.63
30950060--30950092	15	2.2	15	89	10	50	12	21	9	57	1.62
30952980--30953117	24	5.8	24	77	14	128	34	3	2	58	1.30
30952983--30953100	48	2.5	48	82	9	147	35	4	2	57	1.32
30953534--30953566	17	1.9	17	100	0	66	48	0	51	0	1.00
30953897--30953940	5	8.4	5	90	9	70	18	2	0	79	0.83
30953976--30954015	16	2.3	17	87	12	55	57	2	10	30	1.45
30954528--30954566	16	2.4	16	91	0	60	25	12	17	43	1.85
30955400--30955427	3	9.3	3	100	0	56	35	0	0	64	0.94
30963099--30963131	6	5.5	6	100	0	66	18	51	0	30	1.46
30966821--30966867	25	2.0	24	87	8	69	19	17	4	59	1.53
30972228--30972273	17	2.7	17	86	0	65	60	0	0	39	0.97
30972349--30972395	22	2.1	22	88	0	67	57	6	0	36	1.24
30973119--30973182	20	3.2	20	80	10	62	54	0	0	45	0.99
30974408--30974468	19	3.3	17	71	15	50	31	0	3	65	1.09
30978654--30978709	29	2.0	29	82	6	71	53	1	0	44	1.11
30980078--30980138	15	4.0	15	73	10	52	54	1	1	42	1.20
30980089--30980198	32	3.3	33	82	8	93	49	5	2	42	1.40
30980151--30980199	14	3.2	14	74	20	53	42	8	2	46	1.45
30980118--30980199	32	2.5	34	86	5	107	43	8	2	45	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30984343--30984385	20	2.2	20	83	4	52	48	0	0	51	1.00
30984350--30984385	10	3.6	10	92	0	54	50	0	0	50	1.00
31004499--31004529	2	15.5	2	100	0	62	51	0	0	48	1.00
31008484--31008596	29	3.8	30	77	11	110	58	0	0	39	1.10
31009433--31009479	21	2.2	21	85	7	60	44	6	4	44	1.49
31009515--31009559	16	2.6	17	79	6	56	55	2	0	42	1.12
31009696--31009723	1	28.0	1	100	0	56	100	0	0	0	0.00
31016079--31016112	16	2.1	17	88	5	52	23	0	17	58	1.38
31016168--31016200	17	2.0	17	88	5	50	27	0	3	69	1.03
31016728--31016782	22	2.5	22	82	8	67	49	3	5	41	1.43
31017433--31017475	18	2.6	16	79	13	50	62	0	2	34	1.08
31019133--31019468	59	5.7	58	83	10	425	35	11	5	47	1.62
31019480--31019571	5	18.8	5	70	22	54	77	3	4	15	1.06
31019482--31019584	19	5.5	18	68	23	54	75	2	6	14	1.12
31020518--31020615	24	4.3	21	77	17	99	66	2	4	27	1.21
31020583--31020695	4	28.8	4	72	16	60	69	1	2	25	1.11
31020649--31020695	14	3.6	13	81	13	53	68	0	0	31	0.90
31020542--31020695	16	10.1	15	71	18	88	68	1	3	26	1.16
31020662--31020733	25	2.8	26	79	8	78	66	2	4	26	1.23
31020920--31020965	13	3.7	12	80	8	56	13	0	6	80	0.89
31020976--31021128	43	3.6	43	90	0	227	41	22	15	21	1.90
31021100--31021160	31	2.0	31	93	0	104	31	32	14	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31021063--31021199	72	1.9	74	92	3	233	36	25	15	22	1.93
31021131--31021217	41	2.1	41	91	4	140	33	24	16	26	1.95
31022486--31022519	17	2.0	17	88	0	50	0	8	2	88	0.62
31026433--31026768	59	5.8	58	86	4	462	35	11	6	46	1.66
31026433--31026768	117	2.9	117	86	5	475	35	11	6	46	1.66
31026435--31026757	176	1.8	174	92	1	547	36	12	5	45	1.66
31026806--31026862	15	3.9	15	76	17	50	80	1	5	12	0.95
31026806--31026845	15	2.7	15	88	7	55	80	0	7	12	0.91
31026782--31026867	26	3.5	25	75	9	70	79	4	3	12	1.02
31026813--31026874	29	2.1	29	82	11	74	79	1	6	12	1.00
31026820--31026875	18	3.3	17	73	11	53	78	1	7	12	1.02
31026898--31026924	4	6.8	4	100	0	54	74	0	0	25	0.83
31027791--31027833	15	2.9	15	82	6	52	69	0	6	23	1.12
31027811--31027906	22	4.3	21	79	17	97	67	1	4	27	1.15
31027801--31027904	24	4.6	22	79	13	113	66	0	5	26	1.20
31027800--31027904	44	2.3	45	82	8	124	65	0	5	27	1.21
31027935--31027983	16	3.1	16	85	5	64	67	0	0	32	0.91
31028010--31028060	11	4.5	11	76	11	50	74	1	3	19	1.07
31034352--31034422	25	3.0	25	77	6	67	43	0	1	54	1.08
31034351--31034473	31	3.9	34	72	19	97	47	0	0	51	1.12
31034428--31034473	24	1.9	24	82	8	58	47	2	0	50	1.13
31036569--31036657	15	6.0	15	73	12	76	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31036574--31036681	44	2.5	43	82	10	123	58	0	0	41	0.98
31036613--31036673	22	2.8	22	76	16	63	60	0	0	39	0.97
31037350--31037412	24	2.7	24	77	2	65	42	0	7	49	1.32
31037672--31037724	7	7.3	7	81	14	63	24	0	7	67	1.16
31037675--31037729	29	1.9	29	92	3	94	25	0	7	67	1.16
31046195--31046401	106	1.9	107	89	0	317	31	18	17	31	1.94
31052951--31052996	18	2.6	18	85	0	65	47	15	15	21	1.81
31053115--31053157	18	2.6	16	88	7	59	51	4	0	44	1.22
31053265--31053305	16	2.7	15	85	7	55	48	2	0	48	1.14
31056478--31056555	6	13.3	6	79	5	61	48	14	2	34	1.57
31056487--31056587	2	51.0	2	75	2	60	46	7	5	39	1.57
31056471--31056557	12	7.4	12	77	5	70	48	12	3	35	1.58
31056471--31056557	16	5.6	16	76	5	79	48	12	3	35	1.58
31056489--31056557	20	3.5	20	82	3	79	49	11	2	36	1.54
31059669--31059702	18	1.9	17	88	5	50	8	2	2	85	0.80
31059669--31059702	15	2.3	15	89	0	50	8	2	2	85	0.80
31060660--31060691	16	2.0	16	93	0	55	46	0	0	53	1.00
31060659--31060691	15	2.1	16	88	5	50	48	0	0	51	1.00
31061380--31061445	26	2.6	27	88	9	95	50	0	1	48	1.10
31061415--31061467	16	3.4	15	84	7	61	47	1	1	49	1.23
31061559--31061600	11	3.5	13	78	15	54	40	4	0	54	1.21
31061528--31061631	26	4.3	24	79	15	99	43	1	1	52	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31061614--31061687	18	4.4	17	79	17	84	39	1	1	58	1.15
31075195--31075234	14	2.8	14	85	14	55	45	0	0	55	0.99
31076440--31076540	42	2.4	42	86	0	130	34	2	5	56	1.39
31076448--31076519	21	3.5	21	81	9	94	36	2	5	55	1.38
31076483--31076541	21	2.8	22	82	12	70	32	3	8	55	1.46
31078018--31078078	27	2.3	27	88	2	88	63	0	0	36	0.94
31078548--31078612	27	2.4	27	85	10	80	70	1	3	24	1.10
31092310--31092335	13	2.0	13	100	0	52	92	7	0	0	0.39
31105704--31105772	34	2.0	34	100	0	138	37	14	11	36	1.83
31114388--31114422	18	1.9	18	88	0	52	5	45	8	40	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190