genome.fa.s223.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  42  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7210977--7211170	8	23.0	8	72	14	61	24	0	4	71	1.05
7210971--7211175	44	4.6	44	77	15	183	24	0	5	69	1.12
7210971--7211174	41	4.9	44	77	15	132	24	0	4	70	1.11
7212158--7212198	17	2.5	17	88	4	57	21	0	24	53	1.46
7213880--7214209	110	3.0	109	85	1	399	38	17	21	22	1.93
7214159--7214225	22	3.0	22	86	2	89	28	16	26	28	1.97
7214165--7214232	23	3.0	23	86	2	93	27	19	26	26	1.99
7214061--7214342	133	2.1	133	86	1	397	36	17	22	23	1.94
7214191--7214555	110	3.3	111	85	2	488	36	16	21	24	1.94
7213945--7214452	243	2.1	243	84	2	655	37	17	21	23	1.94
7214518--7214582	22	3.0	23	82	8	73	30	18	23	27	1.97
7214526--7214608	22	3.8	21	82	4	85	33	18	20	27	1.96
7214695--7214762	23	3.0	24	81	10	72	30	20	22	26	1.98
7214703--7214762	23	2.7	23	86	2	77	33	20	20	26	1.97
7214570--7215004	133	3.3	132	88	3	595	38	18	19	24	1.93
7214833--7214889	23	2.5	23	83	8	73	29	21	22	26	1.99
7214960--7215444	131	3.7	133	84	3	558	37	16	20	24	1.94
7215215--7215264	23	2.1	24	77	7	57	30	20	26	24	1.98
7214620--7215357	373	2.0	375	87	1	1070	37	17	19	24	1.93
7214978--7215481	128	3.9	132	83	3	565	37	17	20	25	1.93
7215727--7215831	41	2.6	41	90	6	160	28	18	20	33	1.96
7217531--7217555	10	2.5	10	100	0	50	0	0	8	92	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7218126--7218157	8	3.9	8	95	4	55	9	0	0	90	0.45
7218126--7218157	9	3.7	9	91	8	57	9	0	0	90	0.45
7222417--7222454	9	4.2	9	89	0	58	84	0	0	15	0.63
7226044--7226087	22	2.0	23	86	4	63	45	6	4	43	1.51
7227146--7227194	22	2.1	25	85	11	68	34	0	2	63	1.06
7227358--7227688	110	3.0	109	86	0	446	37	18	21	22	1.94
7227528--7228092	133	4.3	133	79	7	595	36	18	21	23	1.95
7227777--7227837	23	2.7	23	87	2	88	26	21	26	26	1.99
7227904--7227967	23	2.8	23	90	2	94	26	20	28	25	1.99
7227587--7228092	256	2.0	255	87	2	721	36	18	21	23	1.95
7228033--7228126	22	4.2	22	83	1	107	31	22	21	24	1.98
7227900--7228270	177	2.1	177	83	3	451	36	18	20	23	1.95
7228050--7228141	22	4.1	22	81	5	69	34	20	19	25	1.96
7228074--7228144	23	3.1	23	78	6	65	36	19	16	26	1.94
7228210--7228277	23	3.0	23	83	10	86	30	20	22	26	1.98
7228085--7228519	133	3.3	132	87	3	552	39	18	18	23	1.92
7228342--7228402	23	2.7	23	84	2	79	27	22	22	26	1.99
7227644--7228512	442	2.0	433	84	4	1138	37	18	19	23	1.94
7228262--7228739	242	2.0	241	86	2	663	39	18	18	23	1.92
7228416--7228621	109	1.9	109	90	0	331	40	18	18	22	1.92
7228595--7228652	23	2.6	23	83	2	73	31	20	20	27	1.98
7228475--7228960	132	3.7	132	83	3	531	39	17	19	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7228135--7228872	374	2.0	375	86	1	1043	39	18	18	23	1.92
7229242--7229347	41	2.6	41	88	5	144	30	16	19	33	1.94
7230622--7230664	20	2.2	20	84	12	54	6	2	6	83	0.88
7235943--7235977	17	2.2	17	90	10	56	80	0	0	20	0.72
7238986--7239017	11	2.9	11	100	0	64	15	9	46	28	1.77
7239102--7239138	8	4.6	8	86	0	56	0	5	8	86	0.70
7239140--7239208	22	3.1	24	76	14	76	39	0	1	59	1.06
7239147--7239215	9	7.8	9	73	9	52	42	0	1	56	1.08
7239484--7239545	31	2.0	32	84	9	83	17	8	6	67	1.37
7240128--7240166	17	2.3	17	86	8	53	71	0	25	2	0.98
7240140--7240177	17	2.3	17	86	4	51	71	2	26	0	1.00
7241713--7241742	12	2.4	13	94	5	53	36	0	10	53	1.35
7242898--7242989	44	2.1	44	87	4	132	59	6	9	23	1.52
7243552--7243646	44	2.2	44	92	3	156	61	7	8	23	1.50
7244933--7244957	2	12.5	2	100	0	50	48	0	0	52	1.00
7246273--7246297	2	12.5	2	100	0	50	48	0	0	52	1.00
7247386--7247447	10	6.0	10	80	9	54	58	1	0	40	1.08
7247393--7247448	22	2.6	23	81	15	66	62	1	0	35	1.06
7248879--7248940	31	2.0	32	84	9	83	17	8	6	67	1.37
7251623--7251663	21	2.0	21	90	9	66	26	0	4	68	1.10
7252278--7252370	44	2.1	44	88	4	134	59	8	9	22	1.56
7252297--7252382	44	2.0	44	86	4	120	59	9	8	23	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7252147--7253455	657	2.0	651	95	1	2365	42	11	11	34	1.78
7252927--7253019	44	2.1	44	88	7	136	60	7	7	24	1.50
7253011--7253037	14	1.9	14	100	0	54	85	0	0	14	0.61
7260296--7260333	15	2.5	15	91	0	58	13	7	0	78	0.94
7260317--7260374	20	2.8	19	80	12	62	12	3	6	77	1.09
7260302--7260349	22	2.2	22	81	7	53	12	4	4	79	1.02
7261234--7261312	26	3.4	21	76	20	70	16	3	6	73	1.19
7261234--7261311	11	6.7	11	76	18	70	16	3	6	73	1.20
7261231--7261312	38	2.3	36	84	12	107	17	3	6	73	1.19
7261275--7261310	15	2.5	15	90	4	56	19	5	2	72	1.17
7261525--7261565	17	2.4	17	84	11	57	78	2	0	19	0.87
7261527--7261565	18	2.2	18	90	9	62	79	2	0	17	0.84
7266105--7266156	8	6.4	8	78	12	52	71	0	17	11	1.15
7266103--7266133	9	3.6	9	91	8	55	77	0	12	9	0.99
7266105--7266156	17	3.2	16	75	10	52	71	0	17	11	1.15
7266112--7266166	24	2.3	24	78	6	58	69	0	21	9	1.16
7266915--7266958	23	1.9	23	86	9	63	43	4	25	27	1.74
7267260--7267399	21	6.7	21	80	4	149	37	12	15	35	1.84
7267260--7267399	42	3.3	42	84	4	167	37	12	15	35	1.84
7267344--7267490	79	1.9	79	91	0	240	36	14	18	30	1.90
7267528--7267584	30	1.9	30	89	7	89	28	10	21	40	1.86
7267894--7268235	42	8.1	42	83	5	388	23	13	19	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7267894--7268228	85	4.0	84	85	5	410	23	13	18	44	1.85
7267894--7268235	127	2.7	126	87	3	463	23	13	19	43	1.86
7268449--7268482	17	1.9	18	88	5	52	11	2	5	79	1.02
7268739--7268773	12	2.8	13	86	4	54	68	17	2	11	1.31
7269427--7269461	17	2.1	16	89	5	52	17	5	2	74	1.14
7270898--7270927	11	2.7	11	89	0	51	33	10	10	46	1.71
7271220--7271294	37	2.0	37	92	0	123	18	8	22	50	1.73
7271720--7271759	13	3.2	13	82	3	55	47	0	0	52	1.00
7271720--7271772	23	2.2	25	90	6	83	49	1	0	49	1.12
7271721--7271794	25	3.1	25	78	18	77	45	1	0	52	1.09
7273773--7273871	52	1.9	52	83	4	128	26	20	8	45	1.78
7274867--7274970	52	2.0	52	94	0	181	27	18	7	46	1.76
7278593--7278619	3	9.0	3	100	0	54	33	0	0	66	0.92
7278618--7278645	3	9.3	3	100	0	56	32	32	0	35	1.58
7279831--7279913	22	3.9	22	78	6	73	42	13	13	31	1.82
7279928--7279984	18	3.2	18	80	5	62	43	14	15	26	1.85
7280046--7280083	17	2.2	18	90	4	60	36	10	7	44	1.68
7280076--7280175	17	5.9	17	73	9	87	44	11	14	31	1.79
7280063--7280169	34	3.1	34	77	9	119	42	11	13	33	1.79
7280252--7280343	21	4.3	22	68	21	70	44	17	4	33	1.68
7280289--7280346	23	2.7	21	74	10	62	43	17	3	36	1.66
7280486--7280526	21	2.0	21	85	0	55	41	12	9	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7286028--7286436	211	1.9	211	93	1	712	35	10	4	49	1.57
7287156--7287191	18	1.9	19	88	5	56	72	0	8	19	1.10
7294811--7294851	21	2.0	21	85	9	57	51	7	9	31	1.62
7299981--7300059	40	1.9	39	85	7	104	43	11	15	30	1.82
7317369--7317408	21	1.9	21	89	0	62	22	2	32	42	1.67
7319265--7319305	20	2.0	20	90	0	64	19	2	2	75	1.03
7322762--7322830	35	2.0	35	82	5	86	20	8	2	68	1.30
7325733--7325766	2	17.0	2	100	0	68	0	50	0	50	1.00
7331242--7331310	32	2.2	32	100	0	138	34	17	8	39	1.80
7333504--7333634	23	5.5	24	70	15	76	54	3	4	36	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190