genome.fa.s223.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  105  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16459719--16459777	26	2.3	26	85	8	86	32	23	18	25	1.97
16461513--16461565	26	2.0	26	96	0	97	28	26	18	26	1.98
16457947--16464186	893	7.0	872	82	7	6963	25	24	24	25	2.00
16463283--16463335	26	2.0	26	89	7	81	28	20	22	28	1.99
16466475--16466528	26	2.1	26	96	0	99	24	24	22	29	1.99
16468290--16468342	26	2.0	26	92	0	88	28	26	16	28	1.97
16464722--16471760	897	7.8	898	84	4	8772	26	24	23	25	2.00
16469192--16469244	26	2.0	26	92	0	88	30	26	16	26	1.97
16471006--16471056	26	2.0	26	88	0	75	31	19	17	31	1.95
16471192--16472360	600	2.0	595	84	7	1571	28	23	21	26	1.99
16472497--16472549	26	2.0	26	100	0	106	26	26	20	26	1.99
16473396--16473448	26	2.0	26	88	0	79	26	24	20	28	1.99
16471765--16476463	899	5.3	893	85	4	5873	25	24	24	25	2.00
16475168--16475220	26	2.0	26	88	0	79	30	22	18	28	1.98
16475633--16475688	27	2.1	27	83	3	69	53	19	1	25	1.55
16476071--16476123	26	2.0	26	89	7	81	30	24	18	26	1.98
16476796--16476848	26	2.0	26	96	0	97	26	24	20	28	1.99
16477637--16477689	26	2.0	26	96	0	97	28	26	18	26	1.98
16478505--16478556	25	2.1	25	100	0	104	25	26	19	28	1.98
16481170--16481222	26	2.0	26	92	0	88	26	24	18	30	1.98
16482944--16482996	26	2.0	26	92	7	90	30	26	16	26	1.97
16476913--16483389	902	7.3	884	82	7	7168	26	24	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16483992--16484068	26	3.0	26	98	0	145	27	18	27	27	1.98
16485452--16485504	26	2.0	26	96	0	97	28	20	24	26	1.99
16484121--16487316	881	3.6	887	85	4	3978	26	23	24	26	2.00
16486344--16486396	26	2.0	26	88	0	79	26	16	24	32	1.97
16487241--16487293	26	2.0	26	96	0	97	26	20	24	28	1.99
16489335--16489386	26	2.0	26	96	3	97	26	21	25	26	1.99
16490249--16490301	26	2.0	26	92	0	88	28	18	24	28	1.98
16491140--16491192	26	2.0	26	88	0	79	28	20	22	28	1.99
16488474--16492469	894	4.4	894	85	4	5137	25	24	24	25	2.00
16492037--16492090	26	2.1	26	92	0	90	29	22	24	24	1.99
16492828--16492880	26	2.0	26	100	0	106	26	20	26	26	1.99
16491676--16494860	794	4.0	790	88	3	4400	25	25	25	23	2.00
16493622--16493674	26	2.0	26	92	0	88	30	20	22	26	1.98
16494424--16494476	26	2.0	26	92	0	88	24	18	28	28	1.98
16494067--16498232	899	4.7	895	84	5	5223	25	24	24	25	2.00
16496225--16496277	26	2.0	26	96	0	97	28	16	24	30	1.97
16497083--16497135	26	2.0	26	85	7	72	26	20	22	30	1.98
16497983--16498034	25	2.0	26	96	3	97	26	17	26	28	1.97
16500571--16500623	26	2.0	26	92	0	88	24	18	26	30	1.98
16498248--16503107	890	5.5	885	84	5	5882	25	23	24	26	2.00
16501472--16501524	26	2.0	26	92	0	88	28	20	22	28	1.99
16502345--16502403	26	2.3	26	96	0	109	25	16	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16504978--16505839	433	2.0	432	87	2	1232	20	28	26	24	1.99
16506615--16506667	26	2.0	26	88	0	79	28	26	18	26	1.98
16507315--16507339	4	6.2	4	100	0	50	0	72	28	0	0.86
16507516--16507566	26	2.0	26	96	0	93	27	27	17	27	1.98
16505733--16508439	906	3.0	897	87	3	3756	25	25	23	25	2.00
16507728--16509279	793	2.0	793	92	0	2584	26	24	23	25	2.00
16510559--16510611	26	2.0	26	88	0	79	26	24	20	28	1.99
16509971--16511870	901	2.1	898	89	2	2875	25	24	23	26	2.00
16512247--16512299	26	2.0	26	96	0	97	26	24	20	28	1.99
16511077--16513424	787	3.0	779	87	4	3201	23	25	25	25	2.00
16513907--16513959	26	2.0	26	88	0	79	28	22	20	28	1.99
16514797--16514846	26	1.9	26	95	0	91	26	28	18	28	1.98
16515711--16515762	26	2.0	26	96	3	97	26	25	21	26	1.99
16513040--16516622	893	4.0	894	86	3	4737	26	24	23	25	2.00
16516639--16518887	913	2.5	901	87	3	3176	26	24	23	25	2.00
16519615--16519667	26	2.0	26	96	0	97	28	24	20	26	1.99
16518924--16521894	880	3.4	845	90	4	3964	26	24	22	25	2.00
16520509--16520561	26	2.0	26	96	0	97	26	24	20	28	1.99
16521389--16521441	26	2.0	26	96	0	97	26	24	20	28	1.99
16523085--16523137	26	2.0	26	96	0	97	26	18	26	28	1.98
16522362--16524837	892	2.7	896	85	2	3336	26	22	24	26	2.00
16525448--16525500	26	2.0	26	89	7	81	30	16	26	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16526305--16526357	26	2.0	26	92	0	88	26	16	26	30	1.97
16527194--16527246	26	2.0	26	100	0	106	26	20	26	26	1.99
16524839--16529082	894	4.8	884	85	4	5421	25	23	24	26	2.00
16528089--16528141	26	2.0	26	88	0	79	28	16	24	30	1.97
16528982--16529035	27	2.0	26	85	3	72	25	20	24	29	1.99
16529683--16529735	26	2.0	26	92	0	88	30	20	22	26	1.98
16529567--16533730	866	4.7	879	81	8	4559	24	24	25	25	2.00
16530585--16533730	884	3.5	889	83	6	3809	25	23	25	26	2.00
16534997--16535049	26	2.0	26	92	0	88	26	20	26	26	1.99
16535887--16535939	26	2.0	26	92	0	88	26	20	26	26	1.99
16536785--16536837	26	2.0	26	96	0	97	28	20	24	26	1.99
16537635--16537686	26	2.0	26	96	0	95	26	19	25	28	1.98
16536507--16540887	903	5.0	848	76	10	2681	25	24	24	25	2.00
16538539--16538591	26	2.0	26	88	0	79	30	22	20	26	1.98
16537356--16541300	904	4.4	900	85	3	5204	25	24	24	25	2.00
16540327--16540379	26	2.0	26	96	0	97	26	20	28	24	1.99
16541962--16542014	26	2.0	26	100	0	106	26	20	26	26	1.99
16542873--16542925	26	2.0	26	92	0	88	28	18	24	28	1.98
16544438--16544490	26	2.0	26	96	0	97	26	18	26	28	1.98
16543560--16546270	877	3.0	898	84	5	3595	25	23	24	25	2.00
16546222--16546296	26	2.9	26	97	0	141	25	22	26	25	2.00
16547264--16547795	262	2.0	263	91	2	858	29	17	17	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16549097--16549551	59	7.7	57	82	12	544	33	14	7	43	1.75
16549097--16549555	117	3.9	118	89	5	646	33	14	8	44	1.75
16550000--16550037	20	1.9	20	94	0	67	23	18	26	31	1.97
16550001--16550045	20	2.3	20	88	3	65	26	22	24	26	2.00
16550098--16550168	31	2.3	31	82	0	88	26	23	22	26	2.00
16550177--16550230	25	2.2	24	83	6	63	40	18	5	35	1.74
16550535--16550566	16	2.0	16	93	0	55	68	0	3	28	1.04
16550635--16550706	9	8.6	8	73	19	51	69	5	0	25	1.10
16550667--16550708	9	4.7	9	91	5	59	69	9	0	21	1.17
16550665--16550708	18	2.4	19	85	11	65	68	9	0	22	1.18
16551182--16551234	26	2.0	26	89	7	81	26	16	24	32	1.97
16552797--16552849	26	2.0	26	96	0	97	26	18	26	28	1.98
16553699--16553751	26	2.0	26	96	0	97	26	18	26	28	1.98
16552184--16554416	902	2.5	899	93	2	3845	25	22	24	27	2.00
16554584--16554629	24	1.9	25	91	8	78	26	17	28	28	1.98
16556682--16556733	26	2.0	26	96	0	95	26	19	25	28	1.98
16557561--16557613	26	2.0	26	92	0	88	24	24	20	30	1.99
16558451--16558503	26	2.0	26	96	0	97	28	24	20	26	1.99
16560205--16560257	26	2.0	26	92	0	88	30	22	20	26	1.98
16561973--16562025	26	2.0	26	96	0	97	26	28	18	26	1.98
16562868--16562918	26	2.0	26	100	0	102	25	27	19	27	1.99
16557003--16565165	893	9.2	893	85	4	10426	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16563769--16563821	26	2.0	26	96	0	97	26	24	20	28	1.99
16561112--16565169	903	4.5	900	87	2	5665	25	24	24	25	2.00
16564672--16564724	26	2.0	26	88	0	79	28	26	16	28	1.97
16565258--16565309	26	2.0	26	100	0	104	26	26	19	26	1.99
16564588--16565715	578	1.9	579	87	3	1669	23	25	24	26	2.00
16567050--16567102	26	2.0	26	88	0	79	28	26	18	26	1.98
16565195--16568562	903	3.8	895	85	3	4329	26	23	23	26	2.00
16570544--16570596	26	2.0	26	92	0	88	26	24	20	28	1.99
16569665--16571326	900	1.8	899	87	2	2505	26	24	23	25	2.00
16571356--16577482	895	7.0	869	84	5	7149	25	24	23	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190