genome.fa.s223.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  43  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7333504--7333613	23	4.7	23	68	13	80	55	3	2	38	1.32
7333615--7333814	112	1.8	110	80	8	244	50	7	10	32	1.65
7335306--7335625	159	2.0	159	83	4	405	33	17	16	32	1.93
7338723--7338783	25	2.4	25	83	8	70	34	4	0	60	1.18
7345070--7345539	160	2.9	158	82	3	505	34	7	19	38	1.79
7345173--7345539	159	2.3	159	84	3	470	33	7	20	38	1.80
7346038--7346085	20	2.4	20	89	0	69	31	0	12	56	1.37
7346279--7346312	13	2.5	14	90	4	52	38	8	8	44	1.67
7348343--7348374	12	2.6	13	85	14	50	59	6	0	34	1.23
7348793--7348833	19	2.2	19	100	0	82	26	26	14	31	1.95
7349759--7349809	18	2.9	18	82	5	61	64	0	0	35	0.94
7349757--7349812	12	4.4	13	75	24	57	62	0	0	37	0.95
7359395--7359430	17	2.1	18	89	5	56	61	5	8	25	1.46
7362003--7362028	11	2.4	11	100	0	52	53	0	7	38	1.30
7363598--7363629	15	2.1	16	88	11	50	56	15	9	18	1.66
7365522--7365555	16	2.1	17	88	5	52	32	11	8	47	1.71
7367256--7367971	356	2.0	356	91	1	1168	40	8	17	33	1.80
7369057--7369100	19	2.3	19	84	0	52	54	0	13	31	1.39
7369623--7369671	14	3.6	14	81	8	57	73	0	0	26	0.83
7370659--7370704	24	1.9	24	86	8	67	45	2	0	52	1.13
7378570--7378621	23	2.2	25	86	6	72	50	0	1	48	1.12
7378574--7378621	22	2.0	24	84	11	64	50	0	2	47	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7378577--7378626	13	4.1	12	77	12	57	50	2	2	46	1.24
7379020--7379085	24	2.7	23	75	9	60	59	0	1	39	1.07
7380366--7380416	26	1.9	27	88	11	79	54	3	5	35	1.43
7380396--7380441	21	2.2	21	88	7	67	45	10	4	39	1.59
7380683--7380719	11	3.3	11	88	3	56	27	0	2	70	1.01
7381342--7381381	2	20.0	2	100	0	80	50	0	0	50	1.00
7381824--7381926	50	2.0	51	87	5	147	50	5	6	36	1.53
7385298--7385475	22	7.9	22	72	9	99	46	7	11	33	1.69
7385291--7385381	44	2.1	44	83	4	112	43	8	13	34	1.74
7385421--7385527	22	4.9	22	75	8	83	49	8	11	30	1.68
7385422--7385527	44	2.4	44	82	3	133	49	8	11	31	1.69
7385531--7385582	24	2.2	24	100	0	104	50	7	7	34	1.60
7385693--7385792	22	4.6	22	74	6	62	49	6	11	34	1.63
7385987--7386048	22	2.9	21	80	4	70	45	3	11	40	1.56
7385996--7386048	21	2.5	22	81	3	63	43	3	13	39	1.62
7386027--7386066	19	2.1	19	86	9	55	42	2	15	40	1.60
7386040--7386087	19	2.3	21	82	10	55	45	4	14	35	1.64
7386050--7386198	22	6.8	22	72	14	83	46	6	7	39	1.58
7386128--7386243	22	5.3	22	78	4	99	44	6	6	42	1.55
7386258--7386305	22	2.2	22	82	14	55	52	10	2	35	1.48
7386615--7386680	11	6.0	11	76	0	60	51	4	4	39	1.43
7386820--7386891	22	3.5	22	74	16	73	47	11	6	34	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7386987--7387115	22	5.9	22	76	2	100	49	3	6	39	1.48
7387048--7387155	52	2.1	52	82	3	137	46	4	7	41	1.52
7387109--7387292	66	2.8	66	77	3	165	46	5	7	41	1.54
7386987--7387202	11	20.0	11	64	10	70	48	3	6	42	1.45
7387105--7387296	22	8.7	22	75	4	118	45	6	6	41	1.56
7387903--7387935	16	2.1	16	88	11	50	60	6	0	33	1.21
7390392--7390422	2	15.5	2	100	0	62	48	0	0	51	1.00
7390505--7390529	3	8.3	3	100	0	50	32	0	0	68	0.90
7391942--7391987	3	15.7	3	95	4	85	34	0	0	65	0.93
7393239--7393313	34	2.2	33	79	9	78	24	1	2	72	1.06
7395860--7395912	24	2.2	24	86	3	72	39	1	1	56	1.21
7396326--7396358	2	17.0	2	93	6	59	48	0	0	51	1.00
7399299--7399328	11	2.7	11	94	0	51	6	30	0	63	1.20
7399980--7400161	45	4.1	45	77	10	171	46	17	11	24	1.81
7399977--7400161	90	2.1	86	81	7	212	47	17	11	24	1.80
7400273--7400316	19	2.4	18	81	7	52	40	13	9	36	1.76
7400313--7400341	14	2.0	15	93	6	51	44	13	0	41	1.44
7400840--7400877	20	1.9	20	88	0	58	31	21	10	36	1.87
7401934--7402010	19	4.1	18	79	17	61	9	15	2	72	1.20
7401936--7401995	18	3.4	17	80	13	59	8	13	1	76	1.08
7401927--7402005	16	5.3	14	73	20	54	7	13	1	77	1.05
7406492--7406556	19	3.4	19	80	4	60	75	9	0	15	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7407765--7407796	16	2.0	17	88	11	50	56	6	0	37	1.25
7407834--7407911	6	12.2	6	72	22	61	73	5	1	20	1.10
7407862--7407923	13	4.9	12	77	14	54	72	3	3	20	1.13
7408784--7408829	3	15.3	3	90	0	65	60	0	6	32	1.22
7409582--7409698	60	2.0	60	84	0	153	36	13	25	23	1.92
7410395--7410512	56	2.1	55	83	9	141	10	20	12	56	1.64
7419959--7420030	20	3.1	24	68	25	64	62	6	11	19	1.50
7419954--7420073	41	2.8	43	82	10	156	64	6	10	18	1.47
7420888--7420934	7	7.0	7	86	13	55	10	0	4	85	0.74
7420891--7420920	6	4.8	6	95	4	51	13	0	0	86	0.57
7420891--7420941	12	3.9	13	82	10	59	7	0	5	86	0.71
7420891--7420942	20	2.7	20	87	3	70	7	0	5	86	0.70
7421065--7421115	18	2.9	17	75	11	57	74	3	3	17	1.12
7424566--7424591	2	13.0	2	100	0	52	50	0	0	50	1.00
7426452--7426618	86	1.9	86	98	0	325	37	10	11	40	1.76
7429850--7429944	50	1.9	50	91	0	154	29	30	9	30	1.89
7430712--7430744	1	33.0	1	100	0	66	100	0	0	0	0.00
7432258--7432300	21	2.0	21	90	0	68	18	32	18	30	1.95
7434391--7434453	26	2.4	27	73	7	67	46	0	0	53	1.00
7436541--7436608	3	22.7	3	91	5	111	33	1	30	33	1.67
7441133--7441176	16	2.8	16	82	3	54	72	0	2	25	0.96
7441930--7441956	14	1.9	14	100	0	54	51	0	11	37	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7442800--7442836	19	1.9	19	88	0	56	37	2	16	43	1.62
7457814--7457891	40	2.0	40	92	0	129	35	20	3	39	1.71
7461985--7462349	189	1.9	188	91	2	590	48	6	11	33	1.64
7461982--7462349	63	5.9	62	81	9	424	49	5	11	33	1.64
7467246--7467279	6	5.5	6	89	3	50	0	32	0	67	0.91
7467977--7468010	3	11.3	3	93	0	59	64	0	2	32	1.08
7470492--7470528	16	2.2	18	85	9	51	35	2	2	59	1.26
7471981--7472058	6	12.5	6	82	8	66	25	2	0	71	0.98
7471981--7472061	19	4.2	18	80	13	65	25	2	0	71	0.98
7472017--7472066	3	17.0	3	87	8	68	28	0	2	70	0.99
7473667--7473714	15	3.4	14	75	8	53	60	0	0	39	0.97
7486534--7486558	13	1.9	13	100	0	50	52	16	0	32	1.44
7488770--7488806	19	1.9	19	100	0	74	37	2	16	43	1.62
7488772--7488811	19	2.2	18	90	4	62	37	2	15	45	1.59
7489797--7489872	40	1.9	40	88	0	116	35	22	3	38	1.73
7493536--7493567	14	2.4	14	94	5	57	68	0	31	0	0.90
7493918--7494288	123	3.0	121	81	8	428	46	5	12	35	1.64
7493945--7494288	61	5.6	61	82	7	394	45	4	12	36	1.64
7498166--7498231	18	3.6	18	73	17	64	77	0	18	4	0.94
7498173--7498224	6	8.7	6	79	12	54	80	0	17	1	0.80
7498184--7498225	22	1.9	22	85	9	59	78	0	16	4	0.91
7498141--7498249	34	3.3	32	75	18	91	72	0	20	7	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7499497--7499811	46	6.9	47	86	8	329	36	8	15	38	1.79
7499492--7499841	25	15.0	25	76	13	347	36	9	15	38	1.79
7499518--7499811	92	3.2	92	87	6	384	37	8	15	39	1.78
7499492--7499841	71	5.0	71	82	9	450	36	9	15	38	1.79
7499893--7499988	48	2.0	48	85	6	131	34	15	15	34	1.90
7499898--7500136	114	2.1	114	91	0	379	34	12	16	36	1.86
7500705--7500754	17	2.9	17	85	11	66	16	0	4	80	0.87
7500704--7500761	4	15.0	4	76	20	52	17	0	3	79	0.87
7500770--7500809	19	2.0	20	86	13	57	22	7	2	67	1.28
7501727--7501859	62	2.2	63	79	8	148	55	6	6	32	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190