genome.fa.s223.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  25  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4097520--4097554	5	7.0	5	100	0	70	80	0	0	20	0.72
4097698--4098053	183	1.9	184	89	1	543	40	19	8	31	1.82
4102824--4102874	16	3.1	16	76	15	50	29	0	3	66	1.09
4105223--4105252	8	3.8	8	95	0	51	70	0	0	30	0.88
4106308--4106349	23	1.9	21	85	9	57	47	0	2	50	1.14
4110885--4110944	26	2.3	26	88	2	86	51	0	1	46	1.10
4110981--4111041	15	3.8	16	77	16	54	49	1	1	47	1.21
4110971--4111018	19	2.6	18	90	6	69	50	0	2	47	1.12
4110929--4111041	49	2.2	52	78	10	119	49	0	3	46	1.25
4111030--4111061	10	3.3	10	91	8	57	31	0	0	68	0.90
4111048--4111125	31	2.6	29	82	9	95	38	2	5	53	1.37
4111104--4111150	20	2.3	20	85	7	60	48	0	0	51	1.00
4118729--4118761	17	1.9	17	93	0	57	15	0	3	81	0.80
4120177--4120216	15	2.7	15	88	3	55	57	5	0	37	1.21
4120199--4120255	28	2.0	28	83	6	71	42	1	0	56	1.10
4131335--4131377	13	3.3	13	83	6	52	67	6	2	23	1.27
4131370--4131586	113	1.9	118	82	6	284	44	2	8	44	1.48
4131701--4131733	13	2.4	14	90	5	50	27	3	0	69	1.03
4133587--4133622	18	1.9	19	88	5	56	16	8	0	75	1.04
4142428--4142461	10	3.4	10	84	15	52	52	0	0	47	1.00
4149463--4149514	26	2.0	27	88	3	79	48	1	1	48	1.24
4149534--4149578	20	2.2	21	80	15	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4149519--4149588	19	3.8	20	69	17	62	55	0	0	44	0.99
4149519--4149587	35	2.0	35	82	5	86	55	0	0	44	0.99
4150931--4151014	32	2.5	33	86	5	116	33	3	13	50	1.58
4151019--4151129	32	3.2	37	63	21	103	40	8	3	47	1.50
4150993--4151128	67	2.0	67	98	1	265	41	7	4	47	1.51
4159224--4159262	21	1.9	20	89	5	60	69	0	5	25	1.09
4159950--4160223	43	6.4	43	71	11	179	47	11	13	28	1.77
4160068--4160184	42	2.8	42	76	5	121	54	9	11	24	1.65
4160216--4160423	66	3.2	65	78	12	212	46	11	20	22	1.82
4160855--4160904	18	2.8	18	81	3	57	50	8	10	32	1.65
4161118--4161367	45	5.7	45	65	14	117	39	14	9	37	1.77
4165656--4165689	9	3.9	9	88	7	52	73	0	2	23	0.97
4165664--4165696	13	2.4	14	90	10	50	75	3	0	21	0.93
4170394--4170432	11	3.5	11	86	6	53	56	2	0	41	1.13
4170395--4170434	16	2.4	16	91	4	62	57	2	0	40	1.12
4173830--4173914	28	3.1	28	76	5	75	32	8	2	56	1.42
4173866--4173923	19	2.9	19	79	5	62	31	10	5	53	1.57
4184630--4184671	22	2.0	22	85	4	59	40	7	0	52	1.29
4185650--4185697	18	2.6	19	80	3	53	58	6	2	33	1.35
4189897--4189935	2	19.5	2	100	0	78	51	0	0	48	1.00
4195976--4196004	6	4.8	6	100	0	58	13	0	0	86	0.58
4197524--4197554	12	2.5	13	94	5	55	41	0	6	51	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4205392--4205433	3	14.0	3	100	0	84	33	0	0	66	0.92
4206509--4206543	17	2.1	17	89	10	54	68	0	0	31	0.90
4206596--4206637	21	2.0	21	86	9	59	73	0	4	21	1.01
4208188--4208228	21	1.9	21	90	5	64	75	14	0	9	1.04
4208486--4208511	7	3.7	7	100	0	52	76	11	0	11	1.01
4211527--4211561	16	2.2	16	89	0	52	85	0	11	2	0.69
4212768--4212891	35	3.6	34	86	5	146	34	10	13	41	1.79
4213246--4213495	42	6.0	42	80	1	279	28	12	19	40	1.87
4213241--4213502	126	2.1	126	81	3	321	27	11	19	41	1.86
4213243--4213571	42	7.7	42	76	6	277	27	12	19	41	1.87
4213246--4213571	84	3.8	84	84	4	359	27	12	19	40	1.87
4213456--4213550	48	2.0	48	83	4	120	26	13	17	42	1.87
4213453--4213770	147	2.2	147	84	3	415	24	14	19	41	1.88
4213723--4213811	30	2.9	30	73	18	83	25	12	17	43	1.84
4214113--4214159	21	2.3	20	85	7	67	51	2	2	44	1.25
4214121--4214161	21	2.0	21	100	0	82	48	0	2	48	1.14
4214303--4214547	48	5.1	50	82	9	303	26	11	21	40	1.87
4214326--4214557	95	2.4	98	84	5	303	25	12	20	41	1.87
4214311--4214581	144	1.9	142	83	5	332	27	11	19	41	1.86
4214740--4214782	15	2.5	18	85	14	56	0	23	0	76	0.78
4219364--4219432	29	2.3	29	82	5	84	52	0	2	44	1.16
4220311--4220362	21	2.4	22	80	3	61	51	0	3	44	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4232552--4232611	19	3.2	19	82	0	84	25	1	15	58	1.46
4233351--4233414	16	3.9	17	78	10	71	29	9	6	54	1.57
4233353--4233414	32	2.0	31	87	3	88	30	9	6	53	1.59
4245183--4245570	192	2.0	189	93	1	659	44	15	19	20	1.87
4259557--4259627	29	2.5	28	77	11	81	54	1	7	36	1.36
4266397--4266453	30	1.9	30	85	0	78	45	0	1	52	1.11
4266706--4266750	21	2.1	21	84	15	58	55	4	6	33	1.46
4269110--4269191	39	2.1	39	80	13	89	51	1	2	45	1.22
4272633--4272672	21	1.9	21	90	10	64	35	20	5	40	1.74
4274668--4274710	18	2.4	18	84	7	52	27	4	2	65	1.25
4276586--4276656	15	4.5	15	70	13	52	39	23	8	28	1.84
4276446--4276737	98	3.0	99	84	4	340	42	21	9	27	1.83
4276446--4276737	49	5.9	49	81	4	309	42	21	9	27	1.83
4286590--4286651	20	3.1	19	79	9	70	53	0	0	46	1.00
4286583--4286644	34	1.9	31	87	9	88	51	0	0	48	1.00
4286590--4286656	15	4.4	16	70	20	54	53	0	0	46	1.00
4286755--4286791	18	2.1	18	89	0	56	35	8	0	56	1.29
4286878--4286918	21	2.0	21	85	4	57	58	4	2	34	1.32
4289990--4290067	30	2.7	29	74	16	72	37	19	5	38	1.74
4290035--4290115	31	2.7	30	77	9	83	37	16	7	39	1.76
4308300--4308353	16	3.2	18	73	19	53	38	0	3	57	1.17
4308416--4308470	21	2.6	21	76	0	56	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4308435--4308514	23	3.4	23	78	11	90	35	1	0	63	1.02
4308944--4308998	27	2.0	27	82	10	67	56	0	0	43	0.99
4310302--4310361	24	2.6	24	78	5	70	56	1	0	41	1.09
4311270--4311309	12	3.3	12	82	0	53	32	5	0	62	1.17
4311245--4311309	24	2.8	23	81	6	69	35	6	0	58	1.23
4315644--4315686	18	2.3	19	80	8	52	32	2	11	53	1.50
4317592--4317633	12	3.4	12	81	15	50	47	9	0	42	1.36
4318095--4318181	29	3.0	29	81	9	90	45	2	0	51	1.13
4318111--4318188	29	2.6	30	85	8	104	44	1	0	53	1.08
4319078--4319107	6	5.0	6	91	0	51	13	16	3	66	1.37
4319275--4319321	24	2.0	24	87	4	69	48	0	2	48	1.13
4319249--4319319	24	2.8	25	75	18	67	43	0	2	53	1.15
4319319--4319364	22	2.1	22	81	18	53	47	2	0	50	1.13
4320457--4320498	21	2.1	20	82	8	50	59	23	2	14	1.47
4324484--4324514	2	16.0	2	93	6	55	51	0	0	48	1.00
4324590--4324680	44	2.1	44	93	0	155	36	21	21	19	1.95
4332976--4333020	20	2.3	20	81	7	58	48	24	0	26	1.51
4335328--4335367	2	20.0	2	100	0	80	50	0	0	50	1.00
4335691--4335830	68	2.1	68	87	0	199	40	17	13	28	1.88
4335946--4336177	118	2.0	118	86	1	322	31	15	24	28	1.95
4336251--4336350	51	2.0	51	89	0	155	44	10	13	33	1.76
4339446--4339486	12	3.2	12	86	6	55	46	0	2	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4339492--4339531	20	2.0	20	85	9	55	57	2	0	40	1.12
4349086--4349127	14	3.0	14	83	10	50	45	0	0	54	0.99
4350034--4350062	13	2.2	13	100	0	58	24	0	0	75	0.80
4351055--4351094	21	1.9	21	90	10	64	55	0	10	35	1.34
4351247--4351304	22	2.6	22	81	5	64	56	0	0	43	0.99
4351248--4351307	27	2.2	27	82	5	68	58	0	0	41	0.98
4353855--4353933	36	2.2	36	83	0	104	32	15	22	29	1.95
4369272--4369298	2	13.5	2	100	0	54	48	0	0	51	1.00
4385093--4385150	28	2.0	29	86	3	82	50	0	1	48	1.11
4385093--4385163	28	2.5	27	80	13	72	47	0	1	50	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190