genome.fa.s223.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  99  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15602617--15602666	26	1.9	26	83	0	64	24	24	18	34	1.96
15604415--15604467	26	2.0	26	96	0	97	28	26	18	26	1.98
15605240--15605289	26	1.9	26	87	0	73	12	52	18	18	1.75
15606212--15606264	26	2.0	26	89	7	81	32	26	15	26	1.95
15607107--15607159	26	2.0	26	96	0	97	26	24	20	28	1.99
15608004--15608056	26	2.0	26	96	0	97	26	24	20	28	1.99
15608870--15608919	26	1.9	26	100	0	100	26	26	20	28	1.99
15610934--15610986	26	2.0	26	92	0	88	24	18	26	30	1.98
15612730--15612782	26	2.0	26	92	0	88	30	20	24	24	1.99
15610514--15613636	900	3.5	892	86	3	4195	25	24	24	25	2.00
15614328--15614380	26	2.0	26	96	0	97	28	20	24	26	1.99
15615219--15615282	26	2.5	26	94	0	110	26	15	28	29	1.96
15614592--15615960	689	2.0	689	88	1	2010	25	21	23	29	1.99
15615908--15615960	26	2.0	26	88	0	79	26	18	24	30	1.98
15616811--15616863	26	2.0	26	92	0	88	26	18	24	30	1.98
15615274--15618556	903	3.7	903	86	4	4286	25	23	24	26	2.00
15620733--15620785	26	2.0	26	92	0	88	28	18	24	28	1.98
15618555--15622611	891	4.6	884	83	7	4902	25	23	25	25	2.00
15622503--15622553	26	2.0	26	88	0	75	29	13	27	29	1.94
15623349--15623401	26	2.0	26	96	0	97	26	18	26	28	1.98
15622610--15624973	895	2.7	882	86	4	3345	25	23	24	26	2.00
15625486--15625538	26	2.0	26	89	7	81	28	28	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15624976--15629523	902	5.1	900	87	2	6261	25	24	23	25	2.00
15627268--15627320	26	2.0	26	96	0	97	28	22	18	30	1.98
15628176--15628228	26	2.0	26	96	0	97	24	26	20	28	1.99
15629066--15629118	26	2.0	26	92	0	88	26	26	20	26	1.99
15629144--15630288	383	3.0	381	93	1	1916	23	23	25	27	2.00
15630713--15630763	26	2.0	26	96	0	93	29	25	17	27	1.98
15630305--15632626	887	2.6	882	86	3	3151	26	25	23	24	2.00
15632745--15632795	26	2.0	26	96	0	93	27	27	17	27	1.98
15632478--15632992	255	2.0	258	90	4	810	19	24	30	25	1.98
15629903--15635462	883	6.3	887	78	8	5446	24	25	25	25	2.00
15635151--15635203	26	2.0	26	96	0	97	26	24	20	28	1.99
15637575--15637627	26	2.0	26	96	0	97	26	28	18	26	1.98
15638452--15638507	26	2.2	26	96	0	103	30	25	17	26	1.97
15636727--15640117	880	3.8	883	85	5	4183	26	23	23	26	2.00
15639339--15639391	26	2.0	26	89	7	81	28	28	18	24	1.98
15637399--15640123	890	3.1	878	83	7	3437	25	24	23	25	2.00
15639522--15641522	709	2.8	709	92	1	3222	27	23	22	26	2.00
15642560--15642612	26	2.0	26	92	0	88	26	24	20	28	1.99
15643463--15643515	26	2.0	26	92	0	88	28	24	18	28	1.98
15644367--15644419	26	2.0	26	92	0	88	30	22	16	30	1.96
15645276--15645328	26	2.0	26	92	0	88	26	26	18	28	1.98
15640779--15646261	904	6.1	904	87	1	7334	25	25	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15646024--15646430	185	2.2	185	85	2	541	22	30	25	21	1.99
15647261--15647313	26	2.0	26	100	0	106	26	26	20	26	1.99
15646206--15648874	896	3.0	889	87	4	3767	25	25	24	24	2.00
15648848--15648900	26	2.0	26	88	0	79	32	24	16	26	1.97
15650640--15650692	26	2.0	26	88	0	79	28	24	20	26	1.99
15651540--15651592	26	2.0	26	96	0	97	26	24	20	28	1.99
15648824--15656910	900	8.9	899	75	10	6798	25	24	23	25	2.00
15652281--15652631	184	1.9	184	81	4	422	22	28	28	21	1.99
15653480--15653532	26	2.0	26	96	0	97	28	26	18	26	1.98
15654368--15654420	26	2.0	26	100	0	106	26	26	20	26	1.99
15652622--15656910	890	4.8	896	86	3	5780	25	24	23	25	2.00
15656144--15656193	26	1.9	26	95	0	91	26	26	20	28	1.99
15658490--15658540	26	2.0	26	92	0	84	27	27	15	29	1.96
15659394--15659446	26	2.0	26	92	0	88	28	24	18	28	1.98
15660242--15660294	26	2.0	26	96	0	97	28	26	18	26	1.98
15658656--15661799	867	3.6	859	84	7	3809	26	24	23	25	2.00
15662723--15662775	26	2.0	26	96	0	97	26	24	20	28	1.99
15663575--15663627	26	2.0	26	100	0	106	26	26	20	26	1.99
15665326--15665378	26	2.0	26	92	0	88	26	26	20	26	1.99
15667085--15667134	26	1.9	26	87	0	73	26	28	18	28	1.98
15667985--15668037	26	2.0	26	88	0	79	30	24	16	28	1.97
15668885--15668937	26	2.0	26	88	0	79	30	24	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15662876--15664561	891	1.9	899	88	2	2181	26	25	23	25	2.00
15666393--15678801	900	13.9	879	83	6	8333	26	24	23	25	2.00
15672445--15672498	26	2.0	27	92	3	92	25	24	20	29	1.99
15673350--15673402	26	2.0	26	92	0	88	28	24	18	28	1.98
15674233--15674285	26	2.0	26	100	0	106	26	26	20	26	1.99
15675142--15675194	26	2.0	26	92	0	88	28	24	18	28	1.98
15676035--15676086	26	2.0	26	100	0	104	26	26	19	26	1.99
15676935--15676987	26	2.0	26	96	0	97	26	24	20	28	1.99
15671562--15678795	900	8.1	900	86	2	9440	26	24	23	25	2.00
15678720--15678772	26	2.0	26	96	0	97	28	26	18	26	1.98
15679792--15679844	26	2.0	26	100	0	106	26	26	20	26	1.99
15680158--15680210	26	2.0	26	92	0	88	26	22	20	30	1.98
15680184--15684160	877	4.5	853	81	8	4269	25	25	24	25	2.00
15682785--15682857	26	2.8	26	100	0	146	28	27	16	27	1.97
15683669--15683721	26	2.0	26	96	0	97	26	24	22	26	2.00
15685675--15685728	26	2.1	26	92	0	90	29	25	20	24	1.99
15687430--15687482	26	2.0	26	88	0	79	30	24	16	28	1.97
15685008--15689999	895	5.6	870	82	7	5566	26	24	23	25	2.00
15689210--15689262	26	2.0	26	92	0	88	30	22	16	30	1.96
15690799--15690851	26	2.0	26	92	0	88	28	24	18	28	1.98
15691606--15694392	878	3.2	868	83	5	3337	25	25	24	25	2.00
15695203--15695255	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15697336--15697385	26	1.9	26	83	0	64	26	24	18	32	1.97
15698851--15699117	147	1.8	147	80	4	324	18	31	27	22	1.97
15701570--15701620	26	2.0	26	96	0	93	29	25	17	27	1.98
15704247--15704299	26	2.0	26	100	0	106	26	26	20	26	1.99
15705121--15705176	26	2.2	26	93	0	94	30	23	19	26	1.98
15706468--15710383	905	4.4	865	85	6	4613	26	24	23	25	2.00
15712639--15712691	26	2.0	26	88	0	79	28	22	18	30	1.98
15713544--15713593	26	1.9	26	95	0	91	24	30	18	28	1.97
15714446--15714497	26	2.0	26	85	3	70	30	23	21	25	1.99
15715329--15715379	26	2.0	26	92	0	84	29	23	19	27	1.98
15716210--15716262	26	2.0	26	92	0	88	26	22	24	26	2.00
15717366--15717418	26	2.0	26	96	0	97	26	24	20	28	1.99
15717392--15724529	907	8.0	885	86	4	8715	26	25	24	24	2.00
15719154--15719206	26	2.0	26	92	0	88	28	24	18	28	1.98
15720967--15721019	26	2.0	26	92	0	88	26	22	20	30	1.98
15722567--15722598	12	2.7	12	95	0	55	6	71	18	3	1.20
15723664--15723716	26	2.0	26	92	0	88	28	24	18	28	1.98
15724739--15724789	26	2.0	26	96	0	93	33	23	15	27	1.95
15725390--15725439	24	2.0	25	92	3	84	26	22	24	28	1.99
15726270--15726319	24	2.0	25	92	3	84	28	20	24	28	1.99
15725037--15729045	882	4.5	881	83	7	4665	25	24	24	25	2.00
15727141--15727190	26	1.9	26	95	0	91	26	28	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15728913--15728965	26	2.0	26	88	0	79	30	24	16	28	1.97
15729230--15729282	26	2.0	26	85	0	70	30	28	13	28	1.94
15730283--15730335	26	2.0	26	88	0	79	28	22	20	28	1.99
15731751--15731780	4	7.5	4	92	0	51	0	70	26	3	1.03
15731961--15732013	26	2.0	26	96	0	97	28	26	18	26	1.98
15731204--15733617	904	2.7	900	86	2	3314	25	24	23	26	2.00
15733626--15733675	26	1.9	26	95	0	91	26	20	28	26	1.99
15734175--15735664	751	2.0	756	84	5	1970	25	26	26	22	2.00
15735273--15735325	26	2.0	26	96	0	97	26	18	26	28	1.98
15737052--15737104	26	2.0	26	88	0	79	24	20	24	30	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190