genome.fa.s223.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  30  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5170955--5170998	2	22.0	2	95	0	79	47	0	52	0	1.00
5171586--5171708	24	5.0	24	75	6	111	36	8	3	51	1.50
5171984--5172036	21	2.4	21	90	6	79	45	0	0	54	0.99
5180643--5180683	19	2.1	18	86	13	55	58	2	0	39	1.11
5181050--5181089	20	2.1	19	86	13	55	62	0	0	37	0.95
5181050--5181089	19	2.0	20	86	13	57	62	0	0	37	0.95
5182721--5182769	15	3.1	17	77	13	52	34	4	10	51	1.55
5186217--5186294	24	3.2	24	81	5	75	50	2	1	46	1.23
5187456--5187508	13	4.0	13	80	9	54	56	0	0	43	0.99
5187454--5187508	27	2.0	27	89	6	85	56	0	0	43	0.99
5187454--5187500	14	3.4	14	85	2	69	59	0	0	40	0.97
5188101--5188193	47	2.0	47	89	4	143	39	15	3	41	1.63
5189283--5189378	30	3.2	31	79	10	92	52	1	4	42	1.27
5189338--5189413	29	2.6	29	85	8	93	59	3	0	36	1.16
5190475--5190549	38	2.0	37	87	10	107	49	0	2	48	1.15
5190475--5190546	21	3.6	21	71	24	66	50	0	2	47	1.15
5190505--5190550	11	4.3	11	73	15	51	52	0	0	47	1.00
5197064--5197113	22	2.3	22	86	3	66	58	8	2	32	1.39
5197298--5197367	36	1.9	37	83	13	92	44	1	0	54	1.09
5197338--5197420	25	3.4	25	70	18	68	46	2	1	49	1.22
5197323--5197370	16	2.9	17	85	11	64	45	0	0	54	0.99
5197344--5197410	25	2.6	25	82	13	82	46	2	1	49	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5198436--5198487	21	2.4	21	76	20	54	44	1	0	53	1.11
5198484--5198529	16	2.9	16	87	3	58	30	0	0	69	0.89
5202430--5202972	284	1.9	284	98	0	1059	28	25	16	28	1.97
5215215--5215265	3	17.3	3	88	11	79	66	0	0	33	0.92
5215217--5215268	16	3.2	16	92	7	88	67	0	0	32	0.91
5215215--5215265	19	2.7	20	93	6	88	66	0	0	33	0.92
5215558--5215586	12	2.3	13	94	5	51	79	0	0	20	0.74
5218925--5218973	24	2.0	24	88	0	71	26	4	4	65	1.29
5218977--5219040	18	3.8	16	76	12	56	73	4	3	18	1.14
5219470--5219542	16	4.6	16	74	3	58	60	6	9	23	1.52
5223545--5223608	24	2.7	24	82	0	83	40	9	7	42	1.66
5226190--5226313	61	2.0	61	95	0	221	41	9	10	38	1.72
5228806--5228873	25	2.8	24	80	10	77	42	4	7	45	1.52
5229806--5229830	12	2.1	12	100	0	50	36	8	0	56	1.29
5232259--5232303	22	2.0	22	100	0	90	37	22	4	35	1.74
5238605--5238666	29	2.1	29	85	5	81	24	0	3	72	0.99
5238713--5238751	20	2.0	20	100	0	78	30	7	10	51	1.64
5238849--5238916	21	3.2	23	77	10	74	33	7	10	48	1.65
5241186--5241211	12	2.2	12	100	0	52	84	0	15	0	0.62
5241517--5241579	15	4.3	15	72	12	51	77	3	12	6	1.07
5241519--5241579	7	8.4	7	78	8	52	78	3	11	6	1.05
5243222--5243260	20	2.0	20	89	0	60	25	7	10	56	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5243222--5243268	20	2.3	20	85	3	58	27	6	8	57	1.53
5243370--5243425	21	2.5	23	88	5	80	32	7	10	50	1.64
5244165--5244200	3	11.7	3	94	5	63	30	0	0	69	0.89
5245757--5245784	13	2.2	13	100	0	56	64	0	0	35	0.94
5248173--5248277	50	2.1	51	82	5	124	42	19	6	31	1.76
5248301--5248369	24	2.9	23	75	12	68	33	0	4	62	1.15
5248677--5248719	21	2.1	21	91	8	72	20	6	0	72	1.08
5248678--5248725	17	2.7	17	83	6	51	18	6	0	75	1.01
5249789--5249830	3	14.0	3	94	0	75	66	2	0	30	1.04
5258073--5258101	2	14.5	2	100	0	58	48	0	0	51	1.00
5264052--5264109	24	2.6	21	84	15	80	51	0	5	43	1.24
5264052--5264112	22	2.6	25	77	15	76	52	0	4	42	1.23
5264412--5264463	21	2.5	21	90	6	79	50	0	0	50	1.00
5264412--5264463	22	2.5	22	93	6	90	50	0	0	50	1.00
5264436--5264496	30	2.0	30	83	0	77	54	1	0	44	1.10
5269285--5269361	39	2.0	39	92	0	127	44	18	12	24	1.85
5271845--5271908	17	3.6	17	69	21	51	79	0	4	15	0.89
5271845--5271909	21	3.1	21	77	14	73	80	0	4	15	0.88
5282268--5282316	2	24.5	2	91	0	62	42	0	8	48	1.32
5282268--5282316	14	3.5	14	85	0	71	42	0	8	48	1.32
5287637--5287671	19	1.9	17	88	11	52	57	0	0	42	0.99
5287891--5287961	23	3.1	22	74	6	70	67	4	0	28	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5287894--5287945	26	2.0	26	81	7	61	63	5	0	30	1.18
5288810--5288836	2	13.5	2	100	0	54	51	0	0	48	1.00
5290725--5290768	17	2.6	16	85	7	52	29	0	2	68	1.02
5291350--5291415	15	4.4	15	70	24	50	42	0	1	56	1.08
5291914--5291940	2	13.5	2	100	0	54	51	0	0	48	1.00
5292230--5292267	18	2.2	18	85	4	51	42	0	0	57	0.98
5298893--5298949	29	2.0	29	100	0	114	42	10	10	36	1.74
5300222--5300263	16	2.7	16	78	14	52	16	2	23	57	1.51
5300605--5300660	3	18.3	3	80	10	60	28	1	0	69	0.98
5300605--5300665	16	3.9	15	77	10	61	27	1	0	70	0.97
5302489--5302743	106	2.4	106	85	1	343	47	10	21	20	1.79
5302716--5302776	19	3.4	19	71	13	65	45	11	21	21	1.82
5302707--5302778	35	2.1	35	92	5	119	44	11	25	19	1.83
5302489--5302804	106	3.0	104	80	5	339	46	11	21	20	1.81
5302555--5302802	35	7.0	35	70	11	94	47	10	21	20	1.80
5303931--5303970	11	3.8	10	83	9	53	5	10	0	85	0.75
5303931--5303971	12	3.5	12	83	9	50	4	9	0	85	0.73
5314639--5314668	14	2.1	14	100	0	60	40	0	0	60	0.97
5315467--5315596	49	2.6	48	83	7	154	22	3	26	47	1.66
5315721--5315774	3	17.7	3	79	11	56	29	3	0	66	1.09
5316992--5317032	20	2.0	20	85	0	55	12	9	58	19	1.61
5322699--5322726	14	2.0	14	100	0	56	14	14	28	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5322820--5322874	24	2.3	24	81	3	67	52	0	1	45	1.11
5323424--5323458	17	2.1	17	88	0	52	45	11	5	37	1.64
5323525--5323577	13	4.0	12	77	20	52	33	0	1	64	1.05
5323516--5323570	28	1.9	29	85	3	76	38	1	1	58	1.20
5331159--5331210	25	2.1	25	85	7	70	44	9	0	46	1.36
5331484--5331544	27	2.3	26	80	2	68	45	3	8	42	1.50
5333287--5333330	15	3.0	14	80	9	52	63	2	0	34	1.07
5333677--5333711	17	2.1	17	89	5	54	8	54	0	37	1.31
5347603--5348182	290	2.0	291	98	0	1117	35	18	14	32	1.91
5349078--5349110	2	16.5	2	100	0	66	48	0	0	51	1.00
5358441--5358482	21	2.0	21	85	0	57	30	9	50	9	1.67
5361599--5361632	15	2.2	16	89	5	52	47	2	2	47	1.32
5364390--5364431	2	21.0	2	95	0	75	47	0	52	0	1.00
5371593--5371622	2	15.0	2	100	0	60	50	0	50	0	1.00
5372523--5372550	2	14.0	2	100	0	56	50	0	0	50	1.00
5374911--5374962	27	2.0	25	85	7	68	50	0	3	46	1.20
5375070--5375121	23	2.3	23	87	6	72	42	0	0	57	0.98
5376446--5376475	16	1.9	16	93	6	53	66	0	3	30	1.07
5381567--5381604	20	2.0	20	89	5	60	47	0	0	52	1.00
5381564--5381604	22	2.0	20	90	9	64	46	0	0	53	1.00
5381551--5381578	3	9.3	3	100	0	56	32	0	0	67	0.91
5381765--5381844	38	2.1	38	80	0	88	48	15	20	16	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5381768--5381886	37	3.2	37	78	4	98	47	15	21	16	1.83
5381909--5381956	24	2.0	24	92	8	80	39	20	16	22	1.92
5381972--5382114	37	3.9	37	78	6	148	46	15	20	18	1.84
5381961--5382116	73	2.1	73	88	2	224	45	17	19	17	1.86
5382146--5382237	36	2.5	37	89	1	141	42	16	23	17	1.88
5382022--5382427	124	3.4	123	75	13	380	40	17	21	21	1.91
5382269--5382469	86	2.3	86	81	3	226	37	18	21	22	1.94
5383047--5383357	32	9.6	32	76	7	256	34	13	19	31	1.91
5383043--5383354	65	4.8	66	80	6	203	35	14	19	30	1.92
5383109--5383355	64	3.8	65	82	6	304	35	14	20	29	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190