genome.fa.s223.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  103  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16186320--16186371	26	2.0	26	96	0	95	26	25	19	28	1.98
16187210--16187262	26	2.0	26	88	0	79	28	26	18	26	1.98
16188101--16188152	26	2.0	26	96	0	95	26	25	19	28	1.98
16188794--16188819	12	2.2	12	100	0	52	0	69	23	7	1.14
16189865--16189917	26	2.0	26	96	0	97	26	24	20	28	1.99
16190763--16190815	26	2.0	26	85	0	70	30	20	18	30	1.97
16191664--16191716	26	2.0	26	96	0	97	28	26	18	26	1.98
16194299--16194351	26	2.0	26	96	0	97	26	26	18	28	1.98
16198711--16198763	26	2.0	26	96	0	97	26	24	20	28	1.99
16194425--16205935	884	12.8	885	76	10	9718	25	24	23	25	2.00
16200572--16200624	26	2.0	26	96	0	97	32	26	15	26	1.95
16201473--16201520	25	1.9	25	95	0	87	27	29	18	25	1.98
16203270--16203322	26	2.0	26	96	0	97	28	26	18	26	1.98
16200555--16205935	899	6.0	899	85	4	6824	25	24	24	25	2.00
16205043--16205095	26	2.0	26	92	0	88	26	22	22	28	1.99
16207344--16207421	26	3.0	26	98	0	147	28	26	17	26	1.98
16208251--16208304	26	2.1	26	100	0	108	24	25	22	27	2.00
16210061--16210111	26	2.0	26	92	0	84	27	23	19	29	1.98
16206470--16210825	892	4.8	903	84	5	5437	25	24	23	26	2.00
16211564--16211617	26	2.1	26	100	0	108	24	25	22	27	2.00
16213376--16213428	26	2.0	26	92	0	88	28	22	20	28	1.99
16210840--16214086	893	3.6	900	86	2	4428	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16214875--16214927	26	2.0	26	100	0	106	26	26	20	26	1.99
16217516--16217568	26	2.0	26	89	7	81	30	22	18	28	1.98
16214157--16219977	898	6.6	883	83	7	6233	26	24	23	25	2.00
16220941--16220993	26	2.0	26	88	0	79	30	22	18	28	1.98
16221762--16221814	26	2.0	26	96	0	97	28	26	18	26	1.98
16223542--16223594	26	2.0	26	92	0	88	28	26	16	28	1.97
16221085--16226091	903	5.6	890	84	4	6120	26	24	22	26	2.00
16225312--16225364	26	2.0	26	96	0	97	28	26	18	26	1.98
16226476--16226526	26	2.0	26	100	0	102	27	19	27	25	1.99
16227899--16227951	26	2.0	26	96	0	97	28	20	24	26	1.99
16226607--16231227	870	5.3	868	82	7	5252	26	23	24	26	2.00
16229651--16229703	26	2.0	26	96	0	97	26	20	24	28	1.99
16230489--16230541	26	2.0	26	92	0	88	28	18	24	28	1.98
16232127--16232179	26	2.0	26	88	0	79	28	18	22	30	1.98
16232900--16232952	26	2.0	26	96	0	97	26	22	24	26	2.00
16233788--16233840	26	2.0	26	92	0	88	30	20	22	26	1.98
16236237--16236289	26	2.0	26	88	0	79	28	20	26	24	1.99
16238782--16238815	11	3.1	11	95	0	59	14	35	32	17	1.91
16240275--16240533	135	1.9	135	96	0	482	32	18	16	31	1.94
16241570--16241622	26	2.0	26	88	0	79	30	18	22	28	1.98
16242361--16242413	26	2.0	26	92	0	88	24	18	28	28	1.98
16243209--16243261	26	2.0	26	92	0	88	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16244117--16244169	26	2.0	26	100	0	106	30	20	22	26	1.98
16244990--16245042	26	2.0	26	92	0	88	26	22	24	26	2.00
16242778--16245754	908	3.3	868	82	7	3549	25	23	24	26	2.00
16250205--16250255	26	2.0	26	100	0	102	27	15	27	29	1.96
16249356--16251341	881	2.2	886	85	3	2670	25	25	24	24	2.00
16251111--16251163	26	2.0	26	96	0	97	28	20	24	26	1.99
16251668--16251720	26	2.0	26	100	0	106	30	20	22	26	1.98
16250786--16252132	557	2.4	557	96	0	2430	25	27	24	22	2.00
16253006--16253058	26	2.0	26	96	0	97	26	18	26	28	1.98
16253909--16253961	26	2.0	26	88	0	79	26	18	26	28	1.98
16252354--16269199	900	18.8	903	86	3	21757	25	24	24	25	2.00
16254806--16254858	26	2.0	26	92	0	88	26	16	26	30	1.97
16255704--16255756	26	2.0	26	96	0	97	28	20	26	24	1.99
16256605--16256655	26	2.0	26	96	0	93	27	17	27	27	1.98
16257497--16257549	26	2.0	26	85	0	70	32	18	20	28	1.97
16258399--16258451	26	2.0	26	96	0	97	30	18	22	28	1.98
16259301--16259351	26	2.0	26	96	0	93	29	15	27	27	1.96
16260197--16260272	26	2.9	26	94	0	134	28	18	25	27	1.98
16261123--16261172	26	1.9	26	100	0	100	28	20	26	26	1.99
16264684--16264736	26	2.0	26	92	0	88	30	22	20	26	1.98
16265578--16265633	26	2.2	26	90	0	85	28	17	21	32	1.96
16267380--16267432	26	2.0	26	92	0	88	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16268271--16268323	26	2.0	26	85	7	72	32	18	22	26	1.97
16271586--16271638	26	2.0	26	88	0	79	28	26	16	28	1.97
16272489--16272541	26	2.0	26	92	0	88	30	24	20	24	1.99
16270715--16276288	902	6.2	901	84	4	6929	25	24	24	24	2.00
16274294--16274346	26	2.0	26	92	0	88	30	26	16	26	1.97
16275196--16275248	26	2.0	26	92	0	88	28	24	20	26	1.99
16276102--16276153	26	2.0	26	88	3	79	32	23	15	28	1.95
16278836--16278888	26	2.0	26	92	0	88	26	18	24	30	1.98
16277252--16280104	872	3.3	857	84	7	3488	26	24	24	25	2.00
16280455--16280505	26	2.0	26	92	0	84	29	17	25	27	1.98
16282093--16282146	26	2.1	26	100	0	108	27	22	25	24	2.00
16282991--16283043	26	2.0	26	96	0	97	28	20	24	26	1.99
16281744--16289086	900	8.3	895	85	6	9290	25	24	25	25	2.00
16284745--16284797	26	2.0	26	92	7	90	26	22	22	28	1.99
16285612--16285664	26	2.0	26	96	0	97	28	20	26	24	1.99
16286498--16286550	26	2.0	26	88	0	79	26	18	26	28	1.98
16287379--16287431	26	2.0	26	96	0	97	28	20	24	26	1.99
16288253--16288331	26	3.0	26	98	0	149	26	22	26	24	2.00
16289149--16293339	898	4.8	875	82	7	4589	25	24	24	26	2.00
16291626--16291678	26	2.0	26	92	0	88	28	18	26	26	1.98
16292810--16293868	530	2.0	530	91	1	1712	25	22	22	30	1.99
16294837--16294889	26	2.0	26	88	0	79	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16295478--16297644	864	2.5	865	85	5	2882	24	25	25	24	2.00
16297439--16297491	26	2.0	26	100	0	106	26	20	26	26	1.99
16297418--16297832	185	2.3	182	85	2	562	22	26	28	22	1.99
16300755--16300807	26	2.0	26	88	0	79	24	16	28	30	1.97
16302995--16303047	26	2.0	26	96	0	97	32	26	15	26	1.95
16303893--16303945	26	2.0	26	92	0	88	30	24	18	26	1.98
16304797--16304849	26	2.0	26	96	0	97	28	26	18	26	1.98
16302462--16306443	904	4.5	899	87	3	5443	26	25	23	25	2.00
16308729--16308781	26	2.0	26	92	0	88	30	26	16	26	1.97
16309633--16309683	26	2.0	26	100	0	102	27	23	19	29	1.98
16307922--16310256	903	2.6	895	87	3	3334	27	23	22	25	2.00
16310329--16310381	26	2.0	26	96	0	97	26	24	20	28	1.99
16309600--16310965	709	1.9	698	89	3	2123	28	21	23	26	1.99
16311034--16311059	12	2.2	12	100	0	52	0	65	26	7	1.20
16314615--16314666	26	2.0	26	88	3	79	26	23	23	26	2.00
16311932--16318942	902	7.9	897	78	8	6837	25	24	24	25	2.00
16316335--16316387	26	2.0	26	96	0	97	28	26	18	26	1.98
16317247--16317299	26	2.0	26	96	0	97	26	24	20	28	1.99
16318147--16318199	26	2.0	26	96	0	97	28	26	18	26	1.98
16315852--16318942	896	3.5	893	86	4	4256	26	25	23	24	2.00
16319763--16319814	26	2.0	26	96	0	95	26	25	19	28	1.98
16320655--16320707	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16321553--16321605	26	2.0	26	89	7	81	26	26	18	28	1.98
16318887--16326419	892	8.5	896	85	4	9689	25	24	24	25	2.00
16323291--16323343	26	2.0	26	96	0	97	26	24	20	28	1.99
16322427--16326419	900	4.5	896	87	2	5472	25	24	24	25	2.00
16325090--16325142	26	2.0	26	96	0	97	24	26	22	26	2.00
16327379--16327431	26	2.0	26	92	0	88	26	24	18	30	1.98
16328254--16328305	26	2.0	26	96	0	95	28	26	17	26	1.97
16330009--16330061	26	2.0	26	88	0	79	28	24	20	26	1.99
16331779--16331831	26	2.0	26	92	0	88	28	24	18	28	1.98
16333085--16333141	26	2.2	26	84	3	71	43	17	8	29	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190