genome.fa.s223.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  73  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11954640--11954692	26	2.0	26	96	0	97	26	18	26	28	1.98
11955521--11955573	26	2.0	26	96	0	97	26	18	26	28	1.98
11956392--11956441	26	1.9	26	95	0	91	30	14	26	30	1.94
11958190--11958242	26	2.0	26	96	0	97	24	20	28	26	1.99
11958487--11958556	35	2.0	35	100	0	140	25	11	31	31	1.91
11959457--11959509	26	2.0	26	88	0	79	28	26	18	26	1.98
11959483--11961954	873	2.9	865	80	9	2867	26	24	23	25	2.00
11961159--11961211	26	2.0	26	92	0	88	30	26	16	26	1.97
11961185--11963376	714	3.1	699	86	4	2937	26	24	23	26	2.00
11963481--11963532	26	2.0	26	96	0	95	28	26	17	26	1.97
11963506--11964987	720	2.1	714	89	1	2250	26	23	23	26	2.00
11964226--11984388	904	22.8	903	83	6	23302	25	24	24	25	2.00
11966905--11966955	26	2.0	26	92	7	86	29	27	15	27	1.96
11968683--11968735	26	2.0	26	100	0	106	26	26	20	26	1.99
11969706--11969764	25	2.4	25	97	0	109	11	38	32	16	1.86
11971372--11971424	26	2.0	26	88	0	79	28	26	16	28	1.97
11969815--11984388	860	16.7	859	80	9	13322	25	24	23	25	2.00
11973084--11973135	26	2.0	26	88	3	79	25	25	23	26	2.00
11973987--11974039	26	2.0	26	100	0	106	26	26	20	26	1.99
11975774--11975826	26	2.0	26	100	0	106	26	26	20	26	1.99
11979216--11979271	26	2.2	26	96	0	103	30	25	17	26	1.97
11980125--11980174	26	1.9	26	91	0	82	28	24	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11981016--11981068	26	2.0	26	85	0	70	28	22	20	28	1.99
11983643--11983695	26	2.0	26	100	0	106	26	26	20	26	1.99
11985192--11985244	26	2.0	26	88	0	79	30	26	18	24	1.98
11986090--11986140	25	2.0	26	96	3	95	27	25	19	27	1.99
11985020--11992242	897	8.1	897	84	5	9010	25	24	24	25	2.00
11986986--11987064	26	3.0	26	98	0	149	26	24	20	29	1.99
11986090--11988836	923	3.0	913	86	4	3738	25	24	24	25	2.00
11987910--11987959	26	1.9	26	91	0	82	24	26	20	30	1.98
11989676--11989728	26	2.0	26	92	0	88	28	28	18	24	1.98
11990564--11990616	26	2.0	26	92	0	88	28	24	20	26	1.99
11990661--11990687	14	1.9	14	100	0	54	22	33	29	14	1.94
11991433--11991485	26	2.0	26	88	0	79	28	22	18	30	1.98
11988810--11992213	881	3.8	895	83	5	4364	26	24	23	25	2.00
11995983--11997450	715	2.1	704	86	4	2056	27	23	22	26	2.00
11997564--11997614	26	2.0	26	92	0	84	27	23	19	29	1.98
11996692--12016013	904	21.8	903	84	5	23386	25	24	24	25	2.00
11999370--11999420	26	2.0	26	92	7	86	29	27	15	27	1.96
12001146--12001198	26	2.0	26	100	0	106	26	26	20	26	1.99
12002908--12002960	26	2.0	26	96	0	97	26	24	22	26	2.00
12003827--12003879	26	2.0	26	88	0	79	28	26	16	28	1.97
12005550--12005601	26	2.0	26	85	3	70	25	23	23	28	1.99
12006453--12006505	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12007353--12007405	26	2.0	26	96	0	97	28	26	18	26	1.98
12004793--12016013	901	12.7	898	85	5	13694	25	24	24	25	2.00
12008250--12008302	26	2.0	26	100	0	106	26	26	20	26	1.99
12009129--12009184	26	2.2	26	96	0	103	30	25	17	26	1.97
12010865--12010920	26	2.2	26	93	0	94	30	23	17	28	1.97
12011568--12011593	4	6.5	4	100	0	52	0	73	26	0	0.84
12011774--12011826	26	2.0	26	96	0	97	28	26	18	26	1.98
12010006--12016013	864	6.8	901	85	6	7451	25	24	24	25	2.00
12012676--12012728	26	2.0	26	85	0	70	28	22	20	28	1.99
12014243--12014267	12	2.1	12	100	0	50	0	64	28	8	1.22
12016504--12016559	26	2.2	26	96	0	103	28	23	19	28	1.98
12018577--12018629	26	2.0	26	88	0	79	30	26	18	24	1.98
12020372--12020424	26	2.0	26	96	0	97	26	24	20	28	1.99
12018406--12025646	899	8.1	899	86	3	9585	25	24	24	25	2.00
12021271--12021323	26	2.0	26	92	0	88	26	24	20	28	1.99
12023043--12023095	26	2.0	26	92	0	88	28	28	18	24	1.98
12023932--12023984	26	2.0	26	92	0	88	28	24	20	26	1.99
12022175--12025646	903	3.9	897	86	3	4801	26	24	23	25	2.00
12024831--12024881	26	2.0	26	92	0	84	25	23	19	31	1.98
12028220--12028272	27	2.0	27	85	10	74	28	20	18	32	1.97
12029961--12030018	26	2.2	26	90	3	89	27	25	20	25	1.99
12030860--12030912	26	2.0	26	96	0	97	32	26	15	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12029108--12033074	907	4.4	889	87	3	5468	25	24	24	25	2.00
12033340--12033392	26	2.0	26	88	0	79	32	24	16	26	1.97
12032390--12033769	685	2.0	685	86	3	1946	21	26	26	26	1.99
12034843--12034893	24	2.0	25	85	7	68	29	25	15	29	1.96
12035888--12035940	26	2.0	26	100	0	106	26	16	26	30	1.97
12037278--12037345	26	2.6	26	95	0	118	30	20	23	25	1.98
12038183--12038235	26	2.0	26	92	0	88	28	18	24	28	1.98
12036991--12040097	877	3.5	868	81	8	3442	25	24	24	25	2.00
12039934--12039985	26	2.0	26	96	3	97	28	17	26	26	1.97
12039957--12040310	159	2.2	157	85	3	485	20	29	28	20	1.98
12040085--12045158	874	5.7	874	85	5	6079	25	24	24	25	2.00
12043762--12043814	26	2.0	26	96	0	97	28	20	24	26	1.99
12044503--12044554	26	2.0	26	88	0	77	30	17	23	28	1.97
12045062--12045246	88	2.1	88	95	0	334	33	20	17	28	1.95
12045487--12045566	26	3.1	26	92	0	133	27	17	26	28	1.98
12047827--12047883	25	2.3	25	93	3	98	26	17	29	26	1.97
12048840--12048890	26	2.0	26	88	0	75	29	19	23	27	1.98
12049708--12049760	26	2.0	26	96	0	97	26	20	24	28	1.99
12050459--12050511	26	2.0	26	92	0	88	26	18	24	30	1.98
12051342--12051394	26	2.0	26	85	0	70	30	20	24	24	1.99
12049895--12054037	895	4.7	889	86	3	5594	25	23	24	26	2.00
12053278--12054636	711	1.9	703	88	2	2071	26	23	23	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12054712--12054767	26	2.2	26	96	0	103	25	21	26	26	1.99
12055618--12055668	26	2.0	26	88	0	75	29	15	23	31	1.95
12057366--12057418	26	2.0	26	92	0	88	28	18	24	28	1.98
12053987--12060547	889	7.4	892	84	5	7847	25	23	24	25	2.00
12058258--12058315	26	2.3	25	79	5	73	29	17	22	31	1.96
12056506--12060547	899	4.5	897	86	3	5400	25	24	25	25	2.00
12059168--12059220	26	2.0	26	92	0	88	30	20	26	22	1.98
12061429--12061481	26	2.0	26	85	0	70	30	22	18	28	1.98
12062323--12062401	26	3.0	26	94	0	140	27	18	25	27	1.98
12061451--12065898	889	4.9	920	83	6	5037	25	24	24	25	2.00
12063247--12063297	26	2.0	26	96	0	93	27	17	25	29	1.98
12060558--12065898	893	6.0	887	85	5	6532	25	24	24	25	2.00
12066692--12066744	26	2.0	26	92	0	88	26	22	24	26	2.00
12070538--12070588	26	2.0	26	96	0	93	25	25	19	29	1.99
12070379--12070804	185	2.3	185	81	1	496	22	26	27	23	2.00
12070723--12070775	26	2.0	26	92	0	88	28	24	18	28	1.98
12072522--12072574	26	2.0	26	88	0	79	26	24	20	28	1.99
12070564--12081278	899	12.1	899	81	7	11677	25	24	24	25	2.00
12073421--12073473	26	2.0	26	100	0	106	26	26	20	26	1.99
12074312--12074364	26	2.0	26	92	7	90	26	22	20	30	1.98
12078649--12078701	26	2.0	26	92	0	88	26	22	22	28	1.99
12082858--12082910	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12084356--12084446	45	2.0	45	93	0	155	25	19	26	28	1.99
12085445--12085517	26	2.8	26	93	0	128	28	26	17	27	1.98
12084561--12089812	894	5.8	894	85	5	6782	25	24	24	25	2.00
12088119--12088171	26	2.0	26	96	0	97	26	24	20	28	1.99
12089026--12089078	26	2.0	26	92	0	88	30	24	18	26	1.98
12091508--12091559	26	2.0	26	96	0	95	25	26	19	28	1.98
12093305--12093357	26	2.0	26	100	0	106	26	26	20	26	1.99
12089767--12095476	890	6.4	900	86	3	7523	25	24	24	25	2.00
12095081--12095136	26	2.2	26	96	0	103	28	23	19	28	1.98
12095205--12095777	301	1.9	301	90	0	923	22	24	26	27	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190