genome.fa.s223.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  181  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30626160--30626203	18	2.4	19	85	7	56	50	0	2	47	1.13
30626052--30626456	214	1.9	216	87	4	595	44	3	9	42	1.54
30626685--30626718	15	2.2	16	89	5	52	61	8	0	29	1.26
30658166--30658192	14	1.9	14	100	0	54	51	3	37	7	1.48
30659707--30659754	23	2.1	23	100	0	96	43	18	12	25	1.85
30663907--30663942	18	2.0	18	94	0	63	69	0	0	30	0.89
30665123--30665211	43	2.1	44	83	8	112	39	7	6	46	1.60
30665718--30665763	18	2.6	18	74	16	51	60	6	0	32	1.22
30672589--30673200	306	2.0	306	97	0	1152	38	19	17	24	1.93
30673514--30673572	29	2.0	29	93	0	100	16	23	8	50	1.72
30677995--30678025	16	1.9	16	93	0	53	58	0	0	41	0.98
30678999--30679023	12	2.1	12	100	0	50	44	0	0	56	0.99
30679390--30679446	22	2.7	20	77	22	62	45	1	3	49	1.29
30679531--30679593	29	2.2	28	80	5	74	42	0	3	53	1.16
30679643--30679686	20	2.1	21	84	12	56	31	6	0	61	1.22
30681139--30681181	12	3.6	12	78	12	52	39	0	0	60	0.97
30681139--30681188	24	2.1	24	88	0	73	38	0	0	62	0.96
30687420--30687489	4	16.8	4	76	8	59	71	4	4	20	1.20
30688305--30688335	12	2.6	12	89	0	53	0	16	0	83	0.64
30690684--30690724	19	2.2	19	86	8	57	34	0	0	65	0.93
30702404--30702470	32	2.1	32	88	0	98	25	7	32	34	1.84
30704644--30704692	22	2.4	20	77	12	55	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30706405--30706441	2	18.5	2	100	0	74	48	0	0	51	1.00
30711116--30711141	13	2.0	13	100	0	52	46	7	7	38	1.61
30712823--30712900	38	2.0	39	97	2	149	38	17	10	33	1.84
30717501--30718245	186	4.0	186	97	0	1357	27	15	25	31	1.95
30718484--30718523	21	1.9	21	85	10	55	60	0	0	40	0.97
30718780--30718818	2	19.5	2	89	0	60	48	2	2	46	1.29
30721686--30721849	80	2.1	79	97	1	310	34	9	15	40	1.80
30735568--30735665	32	3.1	32	76	16	96	48	3	1	46	1.24
30735740--30735782	6	6.8	6	84	10	59	53	0	0	46	1.00
30735900--30735974	18	4.2	18	75	14	75	46	1	0	52	1.09
30735903--30735974	6	11.3	6	75	21	67	45	1	0	52	1.09
30735912--30735974	24	2.7	24	85	11	78	47	0	0	52	1.00
30736869--30737530	332	2.0	331	79	7	709	45	6	6	41	1.56
30738046--30738077	16	2.0	16	93	0	55	62	3	0	34	1.11
30740577--30740606	2	15.0	2	100	0	60	50	0	0	50	1.00
30748563--30748593	16	1.9	16	93	0	53	67	3	29	0	1.06
30765081--30765111	16	1.9	16	93	0	53	67	3	29	0	1.06
30767954--30767986	16	2.1	16	100	0	66	39	18	36	6	1.75
30771267--30771338	27	2.6	28	80	6	85	51	0	0	48	1.00
30771591--30771632	13	3.3	13	83	12	52	69	2	0	28	1.01
30771599--30771632	6	5.5	6	86	6	50	70	2	0	26	1.01
30771599--30771633	13	2.8	13	91	4	54	71	2	0	25	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30771663--30771737	12	6.3	12	69	13	57	48	1	0	50	1.09
30771823--30771869	12	3.8	12	81	13	51	40	2	0	57	1.11
30788704--30788745	21	2.0	21	85	4	57	23	16	9	50	1.75
30792826--30792896	14	4.7	15	79	10	65	21	0	25	53	1.46
30792870--30792905	17	2.2	17	90	5	56	11	0	30	58	1.33
30793337--30793361	3	8.3	3	100	0	50	36	0	0	64	0.94
30793468--30793508	13	3.1	14	79	10	50	75	2	0	21	0.92
30793473--30793529	14	3.8	14	74	17	51	77	1	1	19	0.95
30797954--30797979	11	2.4	11	100	0	52	30	15	42	11	1.82
30802503--30802553	24	2.1	25	88	3	77	47	0	5	47	1.26
30807864--30807901	20	1.9	19	89	5	58	31	0	0	68	0.90
30808546--30808595	21	2.4	21	86	6	66	10	6	8	76	1.17
30809904--30809934	15	2.1	15	93	0	53	70	0	0	29	0.87
30809909--30809950	20	2.1	20	86	8	59	73	0	0	26	0.83
30810158--30810208	2	27.0	2	80	11	63	50	1	1	45	1.24
30811024--30811080	24	2.3	24	78	3	60	38	0	0	61	0.96
30814920--30814971	25	2.1	24	82	3	59	53	5	5	34	1.49
30816723--30816812	30	3.0	30	76	11	85	51	0	0	48	1.00
30816752--30816802	18	2.8	18	72	3	57	56	0	0	43	0.99
30816735--30816829	31	3.1	32	79	10	108	50	0	1	48	1.07
30820455--30820775	160	2.0	160	100	0	642	45	5	8	40	1.57
30828891--30828967	30	2.5	32	85	8	104	42	5	11	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30833892--30833929	20	2.0	20	89	5	60	57	0	2	39	1.12
30834117--30834155	20	1.9	21	89	5	62	7	2	10	79	1.02
30834383--30834974	17	34.5	17	67	22	169	50	2	1	45	1.22
30834399--30834500	25	4.5	22	65	25	61	50	1	1	46	1.24
30834355--30834451	38	2.5	38	82	12	119	49	2	1	47	1.20
30834356--30834786	36	11.4	39	68	21	124	50	1	1	46	1.19
30834383--30834632	118	2.2	111	77	11	263	50	2	2	45	1.24
30834481--30834777	8	42.3	7	61	25	51	51	1	1	46	1.18
30834421--30834973	105	5.4	100	74	16	351	50	2	1	45	1.23
30834386--30834871	11	46.2	11	66	22	144	50	1	1	46	1.20
30834705--30834862	14	11.5	14	69	14	71	50	1	0	48	1.12
30834939--30834967	14	2.1	14	100	0	58	44	0	0	55	0.99
30834692--30835002	105	3.0	105	88	4	398	50	4	0	44	1.27
30839450--30839482	17	1.9	17	88	11	50	66	3	0	30	1.06
30840481--30840531	25	2.0	26	84	3	68	31	3	7	56	1.46
30841203--30841270	30	2.2	31	77	15	79	51	0	0	48	1.00
30850261--30850299	19	2.1	19	95	0	69	38	7	15	38	1.76
30850649--30850717	35	1.9	36	88	2	104	65	10	17	7	1.45
30850914--30850969	26	2.2	26	87	6	78	64	12	16	7	1.48
30852313--30852601	59	4.9	58	79	8	316	32	12	6	48	1.66
30852313--30852601	118	2.5	116	81	7	350	32	12	6	48	1.66
30853668--30853739	5	13.8	5	81	18	69	79	2	0	18	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30853666--30853740	6	13.0	6	77	16	70	78	2	0	18	0.86
30853965--30854181	44	4.8	44	82	4	256	42	20	13	23	1.88
30854476--30854514	20	2.0	20	84	0	51	30	17	10	41	1.83
30854773--30855069	20	14.8	20	69	14	105	34	16	9	40	1.80
30854696--30854927	99	2.3	99	90	0	374	35	15	9	39	1.80
30854657--30855012	178	2.0	180	87	1	518	34	16	10	39	1.82
30854793--30854999	79	2.6	79	90	0	308	34	15	9	40	1.81
30855054--30855096	14	3.3	14	75	18	56	34	9	9	46	1.68
30856024--30856069	20	2.3	20	92	0	74	41	15	8	34	1.78
30856192--30856253	23	2.8	23	80	9	67	6	9	0	83	0.79
30856192--30856251	12	5.1	11	84	10	66	6	10	0	83	0.81
30856206--30856266	13	4.8	12	79	16	61	4	9	1	83	0.86
30856206--30856265	15	4.4	14	84	16	65	5	8	1	85	0.81
30856205--30856266	12	5.0	12	81	16	65	6	9	1	82	0.91
30859873--30859932	25	2.4	25	100	0	120	53	3	3	40	1.34
30860159--30860518	59	6.0	58	78	8	330	35	12	3	48	1.59
30860209--30860437	123	1.8	125	84	1	318	34	12	3	48	1.60
30861140--30861198	22	2.6	23	74	10	59	64	13	1	20	1.37
30861581--30861639	29	2.0	29	83	12	75	77	3	1	16	0.98
30861565--30861641	6	13.0	6	75	15	63	77	2	1	18	0.95
30861866--30862544	237	2.9	235	79	6	769	45	12	9	32	1.73
30865066--30865107	22	1.9	22	90	0	66	45	9	11	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30869358--30869514	52	3.0	52	82	1	181	28	22	6	42	1.78
30869538--30869602	11	5.9	11	82	7	87	50	26	0	23	1.49
30869535--30869603	22	3.1	22	87	8	113	47	26	0	26	1.52
30869538--30869600	33	1.9	33	90	0	99	52	25	0	22	1.47
30870433--30870574	52	2.7	52	83	2	187	26	24	7	42	1.80
30880618--30880654	19	2.0	19	89	5	58	35	0	2	62	1.10
30899215--30899259	23	2.0	21	83	8	54	60	0	2	37	1.09
30901199--30901228	15	1.9	16	93	6	53	36	0	0	63	0.95
30901196--30901236	16	2.5	17	76	7	50	43	0	0	56	0.99
30901755--30901779	12	2.1	12	100	0	50	60	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190