genome.fa.s223.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  5  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390432--406964	361	46.1	355	71	12	6824	41	9	7	40	1.67
398839--398871	18	1.9	17	88	11	50	33	6	12	48	1.65
402775--403091	159	2.0	159	81	2	379	41	11	5	41	1.65
403242--403303	30	2.1	30	93	0	106	32	9	16	41	1.80
403316--406579	180	18.2	180	73	10	1149	41	9	8	40	1.68
407204--412099	361	13.5	353	69	13	1230	42	10	7	39	1.68
407201--412193	181	27.5	180	69	12	1727	42	10	7	39	1.68
408651--408785	67	2.0	67	88	2	200	35	12	8	43	1.72
409273--409320	20	2.6	18	68	12	51	50	2	2	45	1.25
408936--409944	531	1.9	525	79	4	1107	43	9	7	39	1.67
409762--411689	177	10.8	177	73	10	896	42	10	7	39	1.67
412195--413129	181	5.3	177	73	11	599	41	10	7	40	1.67
412748--413129	174	2.2	171	79	10	418	41	11	7	40	1.68
413242--413737	180	2.9	165	75	9	424	42	8	7	41	1.64
413245--413932	346	2.0	346	82	3	830	41	9	7	41	1.65
413328--415687	358	6.6	354	75	7	1212	41	9	8	40	1.68
413590--415713	177	11.8	177	74	7	1426	41	9	8	40	1.68
413590--415713	181	11.8	180	74	9	1194	41	9	8	40	1.68
413147--415618	539	4.6	532	76	7	1876	41	9	8	40	1.68
416157--416438	139	2.0	139	87	0	402	45	11	7	36	1.68
417844--419122	181	7.1	179	74	7	885	40	10	8	41	1.69
417965--419122	356	3.2	355	78	7	1058	40	10	8	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418843--418875	18	1.9	17	88	11	50	39	6	6	48	1.53
417841--419061	537	2.3	537	80	5	1313	41	9	8	40	1.69
419001--419238	120	2.0	120	82	1	289	33	14	8	43	1.76
419120--422099	181	16.7	180	74	8	1935	41	10	8	40	1.69
419681--421610	709	2.7	699	77	7	1671	40	9	8	40	1.69
422100--426223	181	23.0	181	75	9	3006	40	8	9	41	1.68
422879--423541	348	1.9	347	82	2	819	39	8	9	42	1.68
424293--424317	13	1.9	13	100	0	50	28	0	0	72	0.86
423240--432515	542	17.2	539	71	13	2620	40	8	9	41	1.69
423221--432599	361	26.1	361	72	9	5164	40	8	9	41	1.69
426258--432599	181	35.2	179	74	7	4040	40	8	9	41	1.69
426258--444786	181	103.1	179	70	11	3027	40	8	9	41	1.68
426275--435953	718	13.4	713	73	9	4561	40	8	9	41	1.68
431154--431495	176	1.9	177	80	5	388	42	9	8	39	1.67
431561--432000	180	2.4	180	79	5	442	39	10	10	39	1.73
432493--432730	132	1.8	131	82	4	309	37	7	5	48	1.57
432903--432979	38	2.0	38	92	0	127	37	7	7	46	1.62
432912--432999	38	2.3	37	84	7	106	38	9	7	44	1.66
432995--444750	540	21.8	538	69	13	2630	39	8	9	41	1.68
435308--435391	34	2.5	34	98	0	159	48	7	4	39	1.52
435399--435431	18	1.9	17	88	11	50	48	3	6	42	1.43
435356--435962	177	3.4	173	79	5	608	40	6	11	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435969--436718	182	4.2	178	75	10	646	38	8	11	42	1.71
435969--437504	356	4.3	353	75	10	972	39	8	11	40	1.72
436729--437604	180	4.9	181	78	8	778	40	9	10	40	1.71
426273--435340	359	25.2	354	71	10	3411	40	8	9	41	1.69
435969--437604	359	4.6	355	75	9	1333	39	8	10	41	1.71
437265--437919	321	2.0	321	79	5	725	39	8	10	41	1.69
437089--438100	501	2.0	501	81	4	1180	39	9	9	41	1.69
438000--438194	106	1.8	106	87	2	293	34	7	6	51	1.56
437851--438387	287	1.9	287	82	2	684	40	7	7	45	1.59
438099--443052	181	27.7	181	75	7	3306	40	8	9	41	1.68
438105--444786	539	12.4	536	74	9	3834	40	8	9	42	1.68
438099--444786	362	18.7	360	74	7	4331	40	8	9	42	1.68
443806--443853	18	2.7	18	84	12	64	47	0	8	43	1.33
446484--447150	181	3.7	179	82	4	719	41	6	8	44	1.60
450414--450463	26	2.0	26	84	4	66	14	4	2	80	0.95
450416--450500	34	2.4	34	80	9	91	17	3	2	76	1.04
450584--450623	11	3.5	12	75	25	50	27	5	5	62	1.37
450620--450679	9	6.8	9	75	16	54	21	1	6	70	1.20
451460--451537	19	4.0	21	77	17	71	14	7	1	76	1.05
451483--451535	25	2.2	25	86	10	74	16	3	1	77	1.01
451484--451525	15	2.8	15	85	7	50	16	2	2	78	0.96
451498--451534	9	4.0	9	89	6	56	21	2	0	75	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451550--451825	117	2.3	117	91	3	446	44	6	11	36	1.67
451550--451825	58	4.7	57	82	5	327	44	6	11	36	1.67
455077--455126	27	1.9	25	92	8	82	44	6	6	44	1.53
455675--455718	10	4.5	10	85	2	54	56	2	0	40	1.11
455752--456172	181	2.3	182	82	6	505	45	5	8	39	1.58
456805--456848	20	2.2	20	88	4	63	56	4	0	38	1.20
456897--456939	18	2.4	18	100	0	86	55	9	11	23	1.64
457721--458595	180	4.9	180	76	8	748	39	5	8	45	1.59
457391--458020	329	1.9	326	81	5	709	41	7	9	41	1.67
472531--472586	25	2.2	24	79	14	60	55	8	8	26	1.60
474245--474285	15	2.7	16	79	20	52	2	17	7	73	1.17
474275--474327	25	2.1	25	82	10	63	11	13	3	71	1.26
475609--475648	21	1.9	21	90	10	64	52	5	0	42	1.23
475818--475858	19	2.1	20	86	13	59	70	4	4	19	1.24
477091--477718	216	2.9	213	75	11	571	54	6	9	30	1.56
477919--478338	223	1.9	222	79	6	474	52	4	10	32	1.55
478242--478683	215	2.1	214	82	6	520	53	4	9	32	1.55
477161--479594	939	2.6	929	80	6	2614	52	5	10	31	1.58
478871--478905	17	2.1	17	88	0	52	65	2	0	31	1.07
478856--479396	218	2.5	216	78	7	526	52	4	10	31	1.57
479773--479834	23	2.8	21	79	11	70	62	3	0	33	1.11
481196--481233	7	5.4	7	93	0	67	39	44	2	13	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481213--481308	50	1.9	50	86	0	138	37	30	5	27	1.78
481271--481326	29	2.0	28	89	3	85	41	28	3	26	1.72
481316--481380	27	2.4	28	78	14	73	38	41	9	10	1.72
481474--481564	15	6.2	15	77	7	53	42	35	3	18	1.67
481474--482293	21	38.1	21	66	11	167	42	33	4	20	1.73
481478--482205	7	100.6	7	69	11	193	42	33	4	19	1.73
481775--481846	15	4.9	15	76	10	67	38	31	12	16	1.86
481834--481888	16	3.4	16	87	0	65	45	32	0	21	1.52
481834--481893	32	1.9	31	86	10	86	45	30	0	25	1.54
482069--482143	29	2.6	29	86	2	96	44	34	1	20	1.60
482095--482216	43	2.8	43	78	5	138	45	29	1	23	1.63
482088--482216	29	4.5	29	70	14	79	45	28	1	24	1.62
482371--482510	45	3.1	44	77	5	136	54	27	5	12	1.61
482417--482458	18	2.4	18	92	4	68	57	30	2	9	1.44
482334--482510	90	2.0	91	80	5	207	51	27	5	15	1.65
482416--482473	27	2.1	27	81	6	64	62	25	3	8	1.40
482511--482614	45	2.3	45	76	3	111	54	17	6	21	1.65
482593--482640	25	2.0	24	83	4	60	70	14	4	10	1.29
482847--482876	14	2.1	15	93	6	53	43	30	6	20	1.77
483642--483680	18	2.2	18	86	9	53	17	2	7	71	1.21
483671--483717	19	2.5	19	89	3	69	19	2	10	68	1.30
483653--483692	12	3.3	12	85	0	53	17	2	10	70	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483671--483724	18	2.9	19	83	5	58	20	1	9	68	1.27
483728--483769	16	2.4	18	76	7	52	69	7	11	11	1.37
483724--483783	17	3.6	17	76	13	54	70	5	13	11	1.33
489205--489234	12	2.5	12	100	0	60	86	0	6	6	0.70
495881--495929	24	2.0	23	81	14	55	40	2	6	51	1.38
497254--497504	131	1.9	130	88	0	376	44	7	3	44	1.50
497439--497470	15	2.1	15	94	0	55	50	0	3	46	1.17
498130--498374	128	1.9	126	82	8	309	42	7	3	46	1.47
498280--498479	101	2.0	99	88	7	296	46	7	2	44	1.41
498379--498621	128	1.9	130	85	6	343	44	6	3	45	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190