genome.fa.s223.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  8  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
818036--818069	17	2.0	17	88	0	50	38	26	14	20	1.91
817959--818152	99	2.0	99	88	0	289	46	18	11	22	1.81
818074--818177	41	2.5	41	85	0	145	50	17	10	22	1.76
817910--818171	140	1.9	143	88	2	404	47	18	11	23	1.80
819307--819350	22	2.0	22	100	0	88	40	22	9	27	1.84
829451--829480	7	4.1	7	91	8	51	13	0	0	86	0.57
829451--829480	15	2.0	15	100	0	60	13	0	0	86	0.57
831015--831041	3	9.0	3	100	0	54	66	0	0	33	0.92
831036--831065	13	2.2	14	94	5	53	63	6	6	23	1.43
834925--834950	3	8.7	3	100	0	52	34	0	0	65	0.93
836002--836034	2	16.5	2	100	0	66	0	48	0	51	1.00
836773--836819	2	23.5	2	95	0	76	48	4	0	46	1.21
837661--837691	2	15.5	2	100	0	62	48	0	0	51	1.00
840905--840940	18	1.9	19	94	5	65	50	2	0	47	1.15
842245--842299	26	2.1	26	89	0	83	41	18	21	18	1.90
842385--842492	50	2.1	51	81	1	119	37	17	9	36	1.82
842509--842631	51	2.4	51	78	4	124	37	14	13	34	1.86
847869--847893	2	12.5	2	100	0	50	48	0	0	52	1.00
855124--855185	30	2.1	30	84	3	81	32	8	22	37	1.83
865729--865754	12	2.2	12	100	0	52	26	15	0	57	1.38
867059--867088	1	30.0	1	100	0	60	0	0	0	100	0.00
867140--867164	10	2.5	10	100	0	50	0	8	0	92	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
867395--867435	3	13.7	3	100	0	82	31	0	0	68	0.90
868127--868165	3	13.0	3	94	0	69	66	2	0	30	1.05
874752--874792	2	21.0	2	85	5	57	51	0	4	43	1.23
876139--876165	13	2.1	13	100	0	54	33	0	0	66	0.92
876491--876523	3	10.7	3	93	6	57	63	0	0	36	0.95
876783--876856	28	2.7	29	79	8	82	41	20	0	37	1.52
881109--881179	28	2.5	28	86	0	106	43	29	0	26	1.55
885339--885378	20	2.0	20	95	0	71	25	27	25	22	2.00
885448--885496	16	2.7	19	78	15	59	32	0	6	61	1.21
886138--886176	20	2.0	20	94	0	69	35	25	15	23	1.94
886447--886481	5	7.2	5	87	6	54	20	40	37	2	1.67
886447--886481	14	2.4	15	95	4	63	20	40	37	2	1.67
886505--886545	13	3.2	13	86	3	57	12	2	7	78	1.06
886501--886545	21	2.2	20	88	4	63	13	2	6	77	1.05
886617--886893	100	2.7	100	84	9	348	46	8	12	32	1.71
886776--886858	42	2.0	42	100	0	166	49	7	16	26	1.72
886815--886989	59	3.0	55	83	15	217	42	9	15	32	1.78
891656--891695	20	2.0	21	90	5	64	15	7	15	62	1.53
895065--895107	2	21.5	2	95	0	77	48	0	2	48	1.14
904504--904539	3	12.0	3	93	0	63	33	30	0	36	1.58
907418--907466	24	2.2	21	85	10	62	14	8	2	75	1.12
914027--914055	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
915575--915609	10	3.5	10	88	0	52	8	31	0	60	1.27
915948--915993	7	6.6	7	100	0	92	56	28	15	0	1.39
930725--930787	23	2.7	25	73	14	71	30	4	1	63	1.24
939126--939187	32	2.0	32	90	3	99	11	16	9	62	1.53
965085--965123	18	2.2	18	90	0	60	43	0	0	56	0.99
965124--965186	21	3.0	21	82	11	60	55	3	0	41	1.16
965145--965186	20	2.0	21	86	4	59	54	2	0	42	1.13
966196--966248	25	2.1	25	86	6	72	47	0	7	45	1.31
966233--966283	23	2.2	24	82	3	59	50	5	0	43	1.26
967733--967758	2	13.0	2	100	0	52	50	0	0	50	1.00
972146--972216	32	2.2	33	87	5	99	39	9	18	32	1.83
974000--974127	54	2.4	54	80	5	134	6	47	4	41	1.49
974051--974174	54	2.3	54	83	8	146	6	45	5	41	1.53
986251--986324	31	2.3	33	86	11	100	36	0	5	58	1.21
986530--986591	25	2.5	24	79	18	74	41	4	6	46	1.51
1004855--1004925	31	2.3	31	87	2	99	35	5	5	53	1.48
1008192--1008304	60	1.9	59	83	7	149	46	3	2	46	1.33
1009834--1009886	23	2.3	21	81	15	61	45	3	1	49	1.31
1009867--1009918	22	2.4	21	75	15	52	48	7	1	42	1.43
1009979--1010021	21	2.0	22	86	4	61	46	0	0	53	1.00
1009962--1010027	22	2.8	24	73	13	66	43	0	1	54	1.09
1015654--1015706	24	2.2	25	86	3	72	66	5	1	26	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1017191--1017220	15	2.1	14	93	6	51	16	0	0	83	0.65
1017290--1017355	25	2.7	23	77	13	62	31	4	1	62	1.25
1017379--1017409	5	6.2	5	100	0	62	19	0	0	80	0.71
1017652--1017707	25	2.3	23	78	6	58	32	3	8	55	1.48
1018143--1018170	3	9.3	3	100	0	56	67	0	0	32	0.91
1021158--1021207	20	2.4	22	80	12	61	20	12	20	48	1.80
1029036--1029081	11	3.5	13	76	23	51	50	0	0	50	1.00
1029034--1029098	26	2.4	27	82	5	78	55	0	0	44	0.99
1029197--1029247	22	2.3	21	72	21	50	41	3	23	31	1.73
1037133--1037159	2	13.5	2	100	0	54	51	0	0	48	1.00
1038570--1038602	2	16.5	2	93	0	57	48	3	0	48	1.17
1048919--1048948	10	3.1	10	95	4	53	36	0	0	63	0.95
1048921--1048950	9	3.2	9	95	4	51	36	0	0	63	0.95
1052019--1052081	18	3.8	18	74	18	66	57	0	1	41	1.08
1061556--1061591	3	12.0	3	93	0	63	69	0	30	0	0.89
1070482--1070535	23	2.3	23	81	6	65	37	1	0	61	1.07
1071309--1071361	22	2.4	21	90	6	79	52	0	0	47	1.00
1071309--1071362	21	2.5	22	88	8	69	53	0	0	46	1.00
1071875--1071912	8	4.9	8	84	15	53	63	0	0	36	0.95
1076847--1076907	20	3.0	21	79	13	65	37	0	1	60	1.07
1077044--1077082	21	1.9	21	94	5	71	64	5	0	30	1.15
1077830--1077867	20	1.9	20	94	0	67	50	5	18	26	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1078879--1078918	15	2.7	15	84	0	62	47	5	12	35	1.63
1079957--1080013	26	2.1	28	81	12	66	45	0	0	54	0.99
1080422--1080460	15	2.7	15	88	4	53	61	5	0	33	1.18
1084885--1085077	100	1.9	100	94	0	341	34	16	16	33	1.91
1085914--1086080	3	57.3	3	70	15	102	35	3	2	58	1.31
1085914--1085968	26	2.1	26	83	12	69	40	0	3	56	1.17
1085980--1086077	34	2.8	35	84	6	126	32	6	0	61	1.21
1087278--1087332	22	2.4	22	85	14	67	16	5	5	72	1.22
1087354--1087486	67	2.0	67	91	5	216	46	7	6	39	1.57
1102407--1102435	14	2.1	14	100	0	58	37	6	6	48	1.57
1109788--1109813	2	13.0	2	100	0	52	50	0	0	50	1.00
1110015--1110047	2	17.0	2	87	6	50	51	3	0	45	1.16
1114167--1114203	2	18.5	2	88	0	56	45	0	2	51	1.15
1121508--1121577	26	2.7	25	82	6	77	35	0	5	58	1.22
1121576--1121629	19	2.8	20	80	8	76	61	0	0	38	0.96
1121622--1121679	21	2.8	21	80	12	66	50	0	0	50	1.00
1121669--1121753	37	2.3	37	81	4	100	45	4	2	47	1.36
1121691--1121743	20	2.6	20	77	11	54	50	3	0	45	1.19
1121704--1121757	27	2.0	27	82	7	65	50	1	0	48	1.11
1146138--1146164	14	1.9	14	100	0	54	55	22	0	22	1.44
1146961--1147050	33	2.7	34	77	3	101	47	6	3	42	1.46
1147673--1147718	18	2.5	20	79	17	62	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1147738--1147771	8	4.6	7	86	13	50	44	0	0	55	0.99
1147738--1147775	16	2.4	16	91	4	60	42	0	0	57	0.98
1152553--1152774	108	2.1	108	98	0	426	24	20	12	42	1.86
1160896--1160943	11	4.6	10	80	14	53	60	0	2	37	1.09
1161932--1161972	13	3.1	13	86	6	55	43	2	4	48	1.37
1168505--1168536	16	2.0	16	100	0	64	31	12	25	31	1.92
1177614--1177638	2	12.5	2	100	0	50	52	0	48	0	1.00
1186512--1186542	4	7.8	4	100	0	62	25	0	74	0	0.82
1189275--1189328	18	3.0	18	81	5	65	31	0	0	68	0.90
1190117--1190153	2	18.5	2	100	0	74	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190