genome.fa.s223.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  40  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6860562--6860599	18	2.1	19	90	5	60	15	5	0	78	0.91
6860751--6860803	23	2.4	21	81	9	61	39	5	3	50	1.44
6862893--6862942	25	2.0	25	96	0	91	30	2	20	48	1.61
6869004--6869061	25	2.3	25	96	0	107	31	24	6	37	1.82
6869558--6869625	30	2.2	31	82	7	86	29	13	10	47	1.75
6869643--6869721	29	2.6	30	71	16	74	49	10	8	31	1.67
6877716--6877770	29	1.9	28	85	3	74	38	7	5	49	1.54
6879704--6879788	30	2.8	29	80	7	82	38	3	18	38	1.68
6880241--6880278	19	2.1	19	85	14	53	44	0	0	55	0.99
6883217--6883263	16	2.9	16	72	12	51	48	4	8	38	1.53
6883202--6883263	32	1.9	32	96	0	115	50	3	8	38	1.48
6883895--6883931	16	2.4	16	90	4	58	67	0	5	27	1.12
6886196--6886221	2	13.0	2	100	0	52	50	0	0	50	1.00
6887397--6887772	60	6.3	59	75	12	333	35	10	5	47	1.62
6887769--6887816	6	8.5	6	88	11	75	70	0	0	29	0.87
6887773--6887816	11	3.9	11	91	5	70	68	0	0	31	0.90
6887769--6887816	17	2.9	16	88	11	78	70	0	0	29	0.87
6888847--6889388	44	12.1	44	74	11	273	43	18	13	24	1.85
6888992--6889080	28	3.1	28	93	1	142	47	17	15	19	1.83
6889047--6889388	87	3.9	88	80	2	384	43	19	13	23	1.87
6889041--6889389	131	2.7	130	88	1	502	43	19	13	23	1.86
6889628--6889668	16	2.5	16	88	4	55	36	19	19	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6898017--6898063	21	2.2	21	92	0	76	31	23	10	34	1.89
6900905--6900937	14	2.3	15	89	5	50	27	0	9	63	1.24
6900925--6901091	58	2.8	59	80	7	196	35	12	7	44	1.70
6901094--6901126	14	2.3	15	89	5	50	30	0	6	63	1.18
6901101--6901301	58	3.4	58	77	13	216	35	9	5	48	1.61
6900870--6901303	189	2.3	187	82	7	506	35	11	6	46	1.66
6902265--6902315	23	2.2	22	82	6	57	9	3	7	78	1.07
6902941--6902995	18	3.2	16	82	12	65	3	5	5	85	0.83
6902953--6902995	20	2.3	19	88	11	63	4	4	2	88	0.70
6902956--6902996	10	4.0	10	83	3	55	7	4	2	85	0.81
6903502--6903607	40	2.7	39	82	5	124	38	11	11	38	1.77
6903724--6903936	104	2.0	105	86	4	297	35	10	17	36	1.85
6903888--6904110	121	1.8	122	86	4	326	34	11	14	39	1.82
6903889--6904110	40	5.5	39	75	11	164	34	11	14	39	1.82
6904085--6904129	19	2.3	19	88	3	63	33	11	17	37	1.85
6903932--6904259	181	1.8	180	80	4	401	35	11	15	36	1.84
6904606--6904655	25	2.0	25	84	7	66	32	12	16	40	1.84
6906238--6906364	9	13.2	9	67	23	55	5	14	2	77	1.06
6906236--6906374	6	22.8	6	69	22	53	5	15	2	76	1.05
6906256--6906374	16	7.6	16	68	22	74	5	14	2	78	1.03
6906193--6906371	33	5.6	32	66	21	101	5	17	2	74	1.10
6906778--6906835	14	4.2	13	82	10	71	12	1	3	82	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6906794--6906834	19	2.2	19	86	4	57	7	0	4	87	0.65
6907916--6907956	18	2.3	18	91	0	64	7	17	0	75	1.02
6907894--6908041	45	3.1	45	72	22	115	6	17	2	72	1.18
6907945--6908037	27	3.5	26	76	14	91	6	17	3	73	1.18
6907916--6908057	19	7.3	19	70	19	55	6	21	2	70	1.20
6908384--6908424	21	2.0	21	90	0	64	2	9	21	65	1.34
6909235--6909279	24	1.9	23	90	4	72	2	6	2	88	0.66
6909235--6909279	12	3.8	12	80	11	56	2	6	2	88	0.66
6909659--6909701	9	4.7	9	80	13	52	4	9	0	86	0.71
6914703--6914807	37	2.9	37	81	8	110	39	9	18	33	1.83
6918632--6918686	25	2.2	26	83	3	67	5	7	9	78	1.10
6919163--6919193	12	2.5	12	94	5	53	54	0	0	45	0.99
6919329--6919371	19	2.2	20	87	4	61	27	0	6	65	1.18
6920115--6920155	16	2.5	17	80	11	50	73	0	0	26	0.84
6923794--6923840	17	2.9	15	84	12	58	87	8	4	0	0.67
6923796--6923840	24	1.9	24	90	4	74	86	8	4	0	0.69
6928789--6928823	11	3.1	11	84	8	52	71	5	0	22	1.07
6937863--6937894	2	16.0	2	93	0	55	50	3	0	46	1.17
6942485--6942631	40	3.7	38	74	10	132	39	11	12	36	1.80
6942484--6942738	41	6.2	40	70	9	181	40	11	13	34	1.81
6944307--6944360	14	4.5	12	85	14	60	5	14	0	79	0.90
6944301--6944363	13	4.8	13	78	5	65	4	15	0	79	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6944297--6944360	27	2.5	24	76	18	65	6	15	0	78	0.95
6944736--6944861	54	2.4	53	89	4	200	38	12	19	29	1.89
6944769--6944864	27	3.6	27	66	5	77	41	11	19	27	1.86
6945103--6945277	83	2.1	83	85	4	235	31	10	14	42	1.81
6946623--6946803	97	1.9	98	88	5	278	22	18	8	51	1.72
6946487--6946969	248	1.9	248	85	4	672	22	18	8	50	1.74
6949188--6949227	17	2.3	18	91	4	64	5	20	0	75	0.99
6952707--6952755	16	3.1	16	77	17	57	0	18	0	81	0.69
6952719--6952743	13	1.9	13	100	0	50	0	12	0	88	0.53
6952705--6952746	14	2.9	14	82	10	57	0	16	0	83	0.65
6958043--6958304	66	4.2	64	72	16	188	34	10	11	43	1.76
6958139--6958254	59	2.0	60	84	5	155	31	8	12	47	1.71
6958257--6958629	61	6.2	59	69	10	186	42	13	13	31	1.82
6958203--6958553	119	2.9	121	76	5	343	40	13	12	33	1.82
6958231--6958603	121	3.1	118	73	10	324	40	12	12	34	1.81
6958812--6958981	60	2.8	62	78	8	179	47	8	10	33	1.69
6960035--6960128	34	2.8	34	81	1	118	42	5	7	44	1.55
6960041--6960178	33	4.1	33	79	0	105	41	6	9	42	1.63
6960866--6960904	15	2.5	16	80	19	55	41	0	0	58	0.98
6961608--6961636	2	15.0	2	92	7	51	48	0	0	51	1.00
6963309--6963342	16	2.0	18	88	11	54	26	5	0	67	1.13
6967179--6967203	12	2.1	12	100	0	50	40	8	16	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6967579--6967622	20	2.2	20	84	8	54	36	0	2	61	1.09
6967647--6967686	19	2.1	19	85	0	53	65	2	0	32	1.06
6967734--6967768	13	2.7	13	86	0	52	48	5	0	45	1.26
6968687--6968727	20	2.0	20	90	9	66	70	4	0	24	1.06
6968888--6969024	60	2.4	57	78	7	157	44	9	8	37	1.68
6970848--6971621	62	12.3	60	74	10	206	39	12	12	35	1.81
6971024--6971641	64	9.8	63	73	12	308	38	12	12	36	1.82
6970834--6971594	126	6.1	125	73	9	412	40	12	12	34	1.80
6970834--6971594	63	12.1	62	73	11	292	40	12	12	34	1.80
6972583--6972616	17	2.0	17	94	0	59	20	5	5	67	1.33
6973362--6973396	13	2.6	14	86	9	54	77	0	22	0	0.78
6984697--6984737	13	3.2	12	86	13	55	41	2	4	51	1.36
6988496--6988528	16	2.0	17	94	5	59	24	18	15	42	1.88
6997008--6997078	36	2.0	36	82	0	88	26	14	16	42	1.87
6997203--6997302	36	2.8	36	77	8	98	27	14	15	44	1.84
6997240--6997395	36	4.3	36	80	3	150	25	11	17	45	1.82
6997901--6997944	3	15.0	3	90	4	72	31	0	0	68	0.90
6999075--6999108	6	5.7	6	89	0	50	2	14	0	82	0.79
6999172--6999226	9	6.1	9	89	0	56	18	0	14	67	1.24
7002718--7002761	22	2.0	22	100	0	88	27	9	36	27	1.87
7005467--7005528	16	3.8	16	72	10	54	35	14	9	40	1.79
7013275--7013314	19	2.0	19	85	9	53	55	0	2	42	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7019987--7020011	2	12.5	2	100	0	50	48	52	0	0	1.00
7025184--7025214	16	1.9	16	93	0	53	61	6	3	29	1.37
7026690--7026737	18	2.7	18	87	3	62	47	6	10	35	1.63
7026716--7026924	86	2.4	87	77	7	210	37	11	14	36	1.81
7027057--7027127	36	2.0	36	88	0	106	45	8	16	29	1.77
7026964--7027131	53	3.1	52	74	10	142	42	13	15	29	1.84
7030010--7030056	23	2.0	24	83	4	60	34	4	12	48	1.61
7030453--7030477	11	2.3	11	100	0	50	44	0	0	56	0.99
7032367--7032397	16	1.9	16	93	0	53	35	12	9	41	1.76
7034755--7034839	43	2.0	43	85	0	116	38	10	11	38	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190