genome.fa.s223.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  21  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3251434--3251546	54	2.1	54	81	6	131	41	6	5	46	1.51
3251464--3251517	20	2.8	20	83	11	67	38	5	1	53	1.35
3251470--3251517	19	2.6	18	80	9	51	43	4	2	50	1.33
3257965--3257994	15	1.9	16	93	6	53	73	0	0	26	0.84
3260946--3260972	14	1.9	14	100	0	54	55	0	0	44	0.99
3262756--3262831	25	3.0	24	76	14	66	40	1	5	52	1.32
3277093--3277146	6	9.0	6	89	0	72	0	42	7	50	1.30
3277093--3277146	4	13.5	4	88	0	72	0	42	7	50	1.30
3287894--3288504	303	2.0	303	99	0	1213	35	14	10	39	1.81
3288959--3289114	21	7.2	21	80	15	133	57	0	5	37	1.21
3288964--3289132	34	4.7	35	77	15	193	56	0	5	37	1.22
3288959--3289150	55	3.5	55	95	2	327	57	0	4	36	1.23
3290661--3290728	30	2.3	29	82	5	91	48	2	8	39	1.49
3294273--3294303	7	4.4	7	95	0	53	48	9	0	41	1.36
3294897--3294923	2	13.5	2	100	0	54	48	0	0	51	1.00
3296288--3296329	3	14.0	3	100	0	84	33	0	0	66	0.92
3298902--3298962	28	2.2	27	85	2	77	24	0	1	73	0.92
3299779--3299820	21	2.0	21	81	9	50	21	2	0	76	0.90
3300491--3300533	21	2.0	21	86	0	59	25	2	0	72	0.97
3304520--3304561	15	2.9	15	86	10	52	33	0	0	66	0.92
3309089--3309113	13	1.9	13	100	0	50	52	8	16	24	1.70
3309410--3309466	19	2.9	19	81	2	69	36	1	7	54	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3309730--3309792	24	2.7	22	76	13	72	39	3	0	57	1.15
3310360--3310401	18	2.2	20	87	8	61	76	2	2	19	1.01
3310696--3310736	14	2.9	14	81	3	55	46	0	4	48	1.23
3311250--3311299	23	2.2	23	82	10	59	52	2	4	42	1.31
3311258--3311302	23	2.0	22	91	4	72	53	0	2	44	1.13
3311266--3311316	23	2.3	22	83	10	59	58	0	1	39	1.09
3311326--3311366	21	2.0	21	85	9	57	41	2	2	53	1.27
3313907--3313946	21	1.9	21	89	0	62	47	2	10	40	1.50
3318472--3318509	20	1.9	20	84	10	51	18	2	5	73	1.14
3318595--3318643	16	3.0	17	82	11	75	75	0	4	20	0.96
3325016--3325081	17	3.7	18	75	13	57	19	0	4	75	0.97
3325525--3325741	58	3.8	57	75	12	167	48	33	1	16	1.54
3325556--3325708	28	5.4	28	81	5	148	49	35	0	14	1.48
3325627--3325675	15	3.4	15	72	11	57	42	48	0	8	1.32
3325697--3325751	14	3.7	16	81	11	64	54	29	0	16	1.42
3325864--3325962	22	4.7	22	69	25	79	52	28	0	19	1.46
3325905--3325968	25	2.8	22	86	9	76	53	26	0	20	1.46
3325937--3325977	15	2.8	14	88	7	55	58	26	0	14	1.37
3325867--3325984	62	1.9	62	91	3	193	54	25	0	19	1.50
3327146--3327198	26	2.0	26	85	0	70	28	1	3	66	1.20
3334402--3334631	128	1.8	127	88	2	354	31	15	14	37	1.88
3334524--3334719	107	1.8	107	86	4	288	31	14	14	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3334916--3335155	110	2.2	110	84	6	299	24	17	17	40	1.90
3335036--3335352	132	2.4	132	81	6	351	22	17	18	41	1.90
3335633--3335759	28	4.4	27	79	8	110	48	31	0	18	1.54
3335633--3335809	13	12.4	13	63	18	50	48	31	0	19	1.53
3335713--3335777	16	4.3	15	77	14	62	47	33	1	16	1.56
3335635--3335759	58	2.2	57	81	7	137	49	31	0	18	1.53
3335765--3335838	28	2.6	28	86	0	94	54	27	1	17	1.51
3335878--3335964	15	5.7	15	76	10	77	55	24	0	20	1.44
3343376--3343446	3	23.7	3	100	0	142	32	0	0	67	0.91
3343857--3343895	21	1.9	21	89	5	62	28	2	10	58	1.44
3343945--3343969	13	1.9	13	100	0	50	16	0	24	60	1.36
3344289--3344326	8	4.5	8	90	9	58	10	2	0	86	0.66
3344289--3344326	17	2.2	17	95	0	67	10	2	0	86	0.66
3344347--3344422	31	2.4	30	80	8	80	42	5	6	46	1.52
3345930--3345962	11	3.1	11	91	4	50	33	9	12	45	1.73
3349567--3349622	27	2.1	27	100	0	112	35	16	14	33	1.88
3356903--3356965	31	2.1	31	81	3	74	39	3	3	53	1.33
3366330--3366588	128	2.0	127	90	0	401	26	18	14	39	1.90
3366881--3367030	74	2.0	74	96	2	275	26	32	18	22	1.97
3367177--3367210	17	2.0	17	100	0	68	29	35	11	23	1.90
3367018--3367337	177	1.8	178	91	2	536	27	23	13	35	1.93
3372004--3372073	2	35.0	2	97	0	131	50	0	1	48	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3373483--3373521	20	2.0	20	94	0	69	25	7	15	51	1.70
3376213--3376240	4	7.0	4	100	0	56	25	0	25	50	1.50
3377117--3377191	33	2.3	33	95	0	132	42	25	13	18	1.87
3380556--3380616	14	4.6	13	73	17	54	67	0	0	32	0.91
3381895--3381936	3	13.7	3	95	5	75	33	2	0	64	1.07
3383215--3383338	40	3.1	40	98	0	239	49	0	23	27	1.51
3390197--3390257	30	2.0	30	87	0	86	40	1	4	52	1.33
3395887--3395940	25	2.2	24	86	6	72	35	3	18	42	1.68
3396042--3396084	20	2.2	19	83	4	50	32	25	13	27	1.94
3396397--3396440	23	1.9	23	85	0	61	6	4	6	81	0.97
3399184--3399237	14	3.7	14	76	9	54	53	25	0	20	1.45
3399228--3399283	16	3.6	16	76	9	62	46	33	1	17	1.59
3399108--3399298	60	3.2	58	77	7	186	46	31	2	19	1.61
3399109--3399285	30	6.0	29	78	9	160	45	32	2	19	1.63
3399138--3399314	90	2.0	90	87	2	257	48	29	1	20	1.60
3407335--3407370	15	2.4	15	95	0	63	16	19	16	47	1.83
3407660--3407754	40	2.3	41	92	1	156	35	17	13	32	1.89
3407894--3407951	22	2.6	23	75	8	57	29	27	18	24	1.98
3408047--3408270	110	2.0	109	84	0	286	25	16	16	41	1.88
3408386--3408447	22	2.8	22	75	0	61	27	24	12	35	1.92
3408140--3408535	132	3.0	131	81	2	445	25	19	15	39	1.91
3408776--3408817	20	2.1	20	90	0	66	45	0	4	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3408838--3408868	16	1.9	16	93	0	53	83	16	0	0	0.64
3410194--3410427	29	8.0	29	76	7	170	46	29	0	22	1.58
3410237--3410497	30	8.9	30	76	11	141	48	30	1	19	1.57
3410326--3410514	14	13.1	13	70	18	101	50	31	1	17	1.53
3410340--3410398	16	3.8	17	72	19	56	49	35	0	15	1.45
3410672--3410805	68	2.0	68	93	0	232	29	14	16	39	1.89
3416724--3416753	2	15.0	2	100	0	60	50	0	0	50	1.00
3417024--3417069	22	2.1	22	91	0	74	23	6	6	63	1.43
3417334--3417366	13	2.4	14	90	5	50	42	0	3	54	1.15
3419269--3419303	2	17.5	2	100	0	70	51	0	0	48	1.00
3419716--3419741	2	13.0	2	100	0	52	50	0	0	50	1.00
3425707--3425744	18	2.1	18	95	0	67	47	15	21	15	1.82
3427641--3427696	27	2.1	28	83	12	73	35	0	3	60	1.14
3428233--3428298	20	3.5	20	70	13	50	63	4	6	25	1.37
3428334--3428384	20	2.5	20	80	0	66	62	5	11	19	1.49
3428486--3428537	18	2.9	18	77	13	63	59	11	5	23	1.53
3428964--3429002	19	2.1	18	86	13	53	15	5	2	76	1.06
3429408--3429456	22	2.2	23	85	3	64	53	0	0	46	1.00
3429474--3429523	16	3.2	16	83	10	52	62	4	0	34	1.14
3429706--3429732	6	4.5	6	100	0	54	70	0	0	29	0.88
3431358--3431419	15	3.8	16	80	16	65	64	0	1	33	1.03
3431453--3431503	14	3.4	16	74	20	56	64	9	0	25	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3440987--3441036	27	1.9	27	84	15	70	40	0	8	52	1.31
3442210--3442285	33	2.4	33	82	4	84	35	2	7	53	1.44
3442135--3442417	21	13.9	20	69	14	136	36	3	7	52	1.46
3442256--3442361	41	2.6	41	82	5	108	37	1	7	52	1.41
3442297--3442477	43	4.3	43	76	5	145	35	5	6	52	1.51
3442366--3442433	22	3.1	22	77	10	68	35	8	7	48	1.62
3443059--3443100	13	2.9	14	82	13	50	26	2	0	71	0.98
3449600--3449635	2	18.0	2	94	0	63	47	2	0	50	1.15
3449810--3449861	27	1.9	27	88	0	77	48	1	0	50	1.12
3450713--3450764	21	2.5	21	90	6	79	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190