genome.fa.s223.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  82  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13231379--13232141	381	2.0	381	88	2	1149	27	17	18	35	1.94
13232924--13232976	26	2.0	26	92	0	88	28	18	24	28	1.98
13235975--13236027	26	2.0	26	88	0	79	24	26	22	26	2.00
13236868--13236920	26	2.0	26	96	0	97	30	24	16	28	1.97
13240283--13240334	26	2.0	25	96	3	95	26	26	21	25	1.99
13241145--13241197	26	2.0	26	96	0	97	26	24	20	28	1.99
13242042--13242091	26	1.9	26	91	0	82	28	24	16	32	1.96
13241145--13245393	896	4.7	893	87	3	5712	26	24	23	25	2.00
13242938--13242990	26	2.0	26	92	0	88	28	26	20	24	1.99
13243826--13243878	26	2.0	26	92	0	88	28	26	20	24	1.99
13244742--13244794	26	2.0	26	92	0	88	28	24	18	28	1.98
13247145--13247197	26	2.0	26	96	0	97	28	26	18	26	1.98
13246291--13248841	903	2.8	896	88	3	3638	25	24	24	25	2.00
13248051--13248100	26	1.9	26	100	0	100	24	26	22	28	1.99
13249654--13249703	26	1.9	26	83	0	64	28	22	18	32	1.97
13250551--13250629	26	3.0	25	90	3	122	31	24	16	27	1.96
13252000--13252367	159	2.3	159	83	1	443	19	30	28	21	1.97
13252348--13252400	26	2.0	26	85	0	70	30	24	16	28	1.97
13253249--13253301	26	2.0	26	89	7	81	28	24	20	26	1.99
13252166--13255432	901	3.6	901	85	3	4084	25	24	24	25	2.00
13254854--13254883	12	2.5	12	100	0	60	6	60	20	13	1.55
13255266--13255315	24	2.1	24	92	0	82	20	22	38	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13256953--13257003	26	2.0	26	96	0	93	25	25	19	29	1.99
13258117--13258169	26	2.0	26	92	0	88	24	18	28	28	1.98
13259031--13259083	26	2.0	26	89	7	81	28	15	26	30	1.96
13257388--13266819	912	10.4	902	82	6	10316	25	23	24	26	2.00
13259934--13260004	26	2.7	26	97	0	133	29	15	25	29	1.96
13260838--13260890	26	2.0	26	96	0	97	26	18	26	28	1.98
13261729--13261781	26	2.0	26	100	0	106	26	20	26	26	1.99
13262625--13262677	26	2.0	26	96	0	97	28	20	24	26	1.99
13262858--13262887	4	7.5	4	100	0	60	0	26	73	0	0.84
13264402--13264454	26	2.0	26	89	7	81	24	20	26	28	1.99
13264836--13264890	27	2.1	27	83	6	69	25	1	20	52	1.56
13268462--13268540	26	3.0	26	98	0	149	24	26	20	29	1.99
13270231--13270283	26	2.0	26	92	0	88	30	26	16	26	1.97
13269326--13272496	894	3.6	888	84	5	3918	26	24	23	25	2.00
13271125--13271177	26	2.0	26	92	0	88	28	24	18	28	1.98
13271723--13271749	13	2.1	13	100	0	54	44	22	22	11	1.84
13273738--13273790	26	2.0	26	92	0	88	26	20	26	26	1.99
13276432--13276483	25	2.0	26	85	10	72	32	17	23	26	1.96
13273014--13279190	901	6.9	895	83	4	7530	26	23	24	26	2.00
13277309--13277361	26	2.0	26	96	0	97	26	18	26	28	1.98
13278193--13278245	26	2.0	26	89	7	81	26	18	26	28	1.98
13279843--13279895	26	2.0	26	92	0	88	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13281648--13281701	26	2.1	26	96	0	99	29	22	25	22	1.99
13279184--13283466	895	4.8	901	84	4	5417	25	24	24	26	2.00
13282544--13282595	26	2.0	26	96	0	95	26	17	26	28	1.97
13284854--13284906	26	2.0	26	88	0	79	28	20	22	28	1.99
13286625--13286703	26	3.0	26	98	0	149	26	17	26	29	1.98
13287549--13287601	26	2.0	26	100	0	106	26	20	26	26	1.99
13287770--13287799	4	7.5	4	92	0	51	0	23	73	3	0.98
13284003--13295461	899	12.8	896	84	5	13846	25	24	24	25	2.00
13289347--13289394	25	1.9	25	95	0	87	25	18	29	27	1.98
13290244--13290296	26	2.0	26	92	0	88	28	20	22	28	1.99
13291131--13291181	26	2.0	26	96	0	93	27	17	29	25	1.98
13292035--13292085	26	2.0	26	96	0	93	27	19	23	29	1.98
13293791--13293843	26	2.0	26	92	0	88	24	20	26	28	1.99
13294668--13294720	26	2.0	26	89	7	81	30	16	24	28	1.97
13297042--13297094	26	2.0	26	92	0	88	28	22	22	26	1.99
13295890--13299808	900	4.4	901	85	4	5133	25	24	24	25	2.00
13299732--13299784	26	2.0	26	89	7	81	26	18	26	28	1.98
13300444--13300496	26	2.0	26	100	0	106	26	20	26	26	1.99
13300673--13300698	12	2.2	12	100	0	52	7	26	65	0	1.20
13301352--13301404	26	2.0	26	96	0	97	28	20	24	26	1.99
13302060--13302110	26	2.0	26	100	0	102	29	19	23	27	1.98
13301477--13310904	898	10.5	893	78	8	9016	25	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13304997--13305049	26	2.0	26	92	0	88	28	18	24	28	1.98
13305686--13305738	26	2.0	26	85	7	72	26	15	24	33	1.95
13305917--13305943	12	2.2	12	100	0	54	11	25	62	0	1.28
13306592--13306644	26	2.0	26	92	7	90	26	16	26	30	1.97
13307481--13307531	26	2.0	26	92	0	84	27	13	25	33	1.94
13309253--13309305	26	2.0	26	96	0	97	26	20	24	28	1.99
13310143--13310195	26	2.0	26	92	0	88	28	18	26	26	1.98
13311687--13311739	26	2.0	26	88	0	79	28	18	22	30	1.98
13312814--13312873	26	2.4	26	83	5	70	28	25	18	28	1.98
13313288--13313345	26	2.2	26	78	0	62	63	5	8	22	1.42
13314579--13314632	27	2.0	27	92	3	92	25	24	20	29	1.99
13315482--13315534	26	2.0	26	92	7	90	26	22	20	30	1.98
13317205--13317257	26	2.0	26	96	0	97	28	26	18	26	1.98
13318981--13319033	26	2.0	26	92	0	88	26	22	20	30	1.98
13318107--13320905	901	3.1	899	87	1	4005	25	25	24	25	2.00
13320785--13320833	25	1.9	26	91	4	82	24	26	18	30	1.98
13323272--13323322	26	2.0	26	92	3	86	25	27	19	27	1.99
13324174--13324224	26	2.0	26	92	3	86	25	27	19	27	1.99
13322422--13324599	889	2.4	885	87	4	3236	25	23	24	26	2.00
13323780--13325402	806	2.0	808	87	4	2356	24	25	24	26	2.00
13325855--13325907	26	2.0	26	92	0	88	30	26	18	24	1.98
13324604--13327320	859	3.1	860	83	6	3130	26	24	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13326739--13326791	26	2.0	26	92	0	88	26	22	18	32	1.97
13325688--13327320	884	1.8	875	84	6	2230	26	23	24	26	2.00
13329065--13329117	26	2.0	26	100	0	106	26	26	20	26	1.99
13327327--13331083	894	4.2	900	87	3	5057	25	24	24	25	2.00
13329959--13330011	26	2.0	26	96	0	97	26	24	20	28	1.99
13330861--13330913	26	2.0	26	88	0	79	24	22	20	32	1.98
13333721--13333773	26	2.0	26	100	0	106	26	16	26	30	1.97
13332105--13335119	902	3.4	893	87	3	4126	25	23	24	26	2.00
13334624--13334675	26	2.0	26	100	0	104	26	19	26	26	1.99
13335450--13339637	899	4.6	903	89	1	5885	25	23	24	26	2.00
13337222--13337275	26	2.1	26	89	6	83	27	18	24	29	1.98
13342123--13342175	26	2.0	26	92	0	88	26	22	20	30	1.98
13342961--13343003	18	2.4	18	96	0	77	18	2	9	69	1.26
13343341--13344771	708	2.0	709	89	2	2167	27	24	22	26	2.00
13344903--13344955	26	2.0	26	89	7	81	32	24	18	24	1.97
13345812--13345864	26	2.0	26	88	0	79	28	22	20	28	1.99
13346713--13346765	26	2.0	26	96	0	97	28	26	18	26	1.98
13344037--13347645	910	4.0	904	87	3	4846	26	25	23	25	2.00
13347443--13347760	158	2.0	158	87	3	453	18	30	28	21	1.97
13350457--13356564	877	6.9	877	85	5	7490	25	23	24	25	2.00
13354696--13354748	26	2.0	26	88	0	79	32	20	22	24	1.98
13356027--13356082	27	2.1	27	83	3	69	23	8	19	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13352045--13356465	899	4.9	895	85	4	5712	25	24	24	25	2.00
13357084--13358680	876	1.8	881	88	1	2490	25	23	24	26	2.00
13360348--13360399	25	2.0	26	96	3	97	26	21	25	26	1.99
13358680--13362862	913	4.7	909	79	8	4307	25	23	25	26	2.00
13361154--13361179	11	2.4	11	100	0	52	11	30	38	19	1.87
13361260--13361309	26	1.9	26	87	0	73	26	22	22	30	1.99
13361447--13361474	12	2.3	12	100	0	56	10	25	64	0	1.26
13362090--13362142	26	2.0	26	92	0	88	26	16	26	30	1.97
13364590--13364643	26	2.1	26	92	0	90	25	24	20	29	1.99
13362875--13369066	903	6.9	899	74	10	4912	25	25	23	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190