genome.fa.s223.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  116  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18138476--18138505	15	1.9	16	93	6	53	66	3	0	30	1.07
18141625--18141673	25	2.0	25	92	4	82	73	8	0	18	1.07
18141628--18141689	24	2.6	23	80	14	65	75	4	0	19	0.97
18142668--18142692	13	1.9	13	100	0	50	72	0	0	28	0.86
18162379--18162895	262	2.0	264	88	1	777	35	15	11	36	1.85
18162966--18163055	6	15.2	6	86	4	103	28	0	7	63	1.22
18164144--18164182	16	2.4	16	91	0	60	51	2	2	43	1.29
18164184--18164359	3	60.0	3	65	16	66	35	5	2	56	1.36
18164159--18164360	5	37.6	5	70	15	63	38	4	2	54	1.36
18177274--18177327	25	2.2	24	87	9	81	24	12	22	40	1.89
18177282--18177332	25	2.0	25	100	0	102	23	11	23	41	1.87
18180911--18180964	22	2.5	22	81	6	65	29	14	11	44	1.80
18184349--18184387	20	2.1	18	85	9	51	56	15	5	23	1.59
18193695--18193736	21	1.9	23	85	9	61	9	14	7	69	1.37
18197812--18197869	21	2.7	21	86	2	71	53	6	12	27	1.63
18198060--18198103	20	2.2	20	83	0	52	15	0	36	47	1.46
18200182--18200320	22	6.3	22	81	0	161	23	11	30	34	1.90
18200196--18200319	66	1.9	66	86	3	178	23	11	31	33	1.90
18200196--18200320	44	2.8	44	91	0	205	23	11	32	33	1.90
18200351--18200497	40	3.7	39	80	8	134	36	12	13	37	1.82
18200459--18200638	40	4.5	40	76	9	163	33	11	17	37	1.86
18200459--18200638	80	2.2	80	81	7	197	33	11	17	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18203494--18203562	31	2.2	31	84	5	86	8	11	5	73	1.23
18210407--18210467	21	2.8	21	90	7	86	1	11	8	78	1.02
18211153--18211216	13	5.1	13	80	14	64	3	15	0	81	0.82
18211153--18211220	22	3.1	22	79	12	61	2	16	0	80	0.82
18211153--18211216	26	2.5	26	85	9	80	3	15	0	81	0.82
18214869--18214900	14	2.4	14	94	5	57	12	0	0	87	0.54
18215792--18215840	26	1.9	26	91	4	82	38	4	6	51	1.46
18216480--18216593	32	3.5	33	72	10	92	14	1	39	43	1.56
18216499--18216601	7	15.7	7	72	11	58	14	0	39	44	1.52
18216563--18216602	13	3.1	13	81	0	53	15	0	42	42	1.46
18216551--18216602	26	2.0	25	88	3	77	15	1	42	40	1.58
18220446--18220534	9	10.4	9	74	11	62	25	26	8	38	1.86
18220478--18220520	22	2.0	22	90	0	68	25	25	6	41	1.80
18220469--18220529	31	2.0	31	93	0	104	26	26	6	40	1.80
18220486--18220533	22	2.2	22	85	7	62	25	27	6	41	1.79
18220835--18220971	44	3.2	41	78	10	143	26	10	17	45	1.80
18221246--18221347	12	8.4	12	82	1	78	17	0	17	64	1.29
18221269--18221311	6	7.2	6	91	0	68	4	0	27	67	1.10
18221302--18221354	6	8.8	6	81	8	63	26	0	7	66	1.18
18221248--18221354	18	5.9	18	85	2	108	17	0	16	65	1.28
18221248--18221342	24	4.0	24	85	0	109	14	0	18	66	1.25
18222475--18222583	19	5.7	19	76	4	103	28	6	13	51	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18222475--18222601	37	3.3	38	80	7	134	29	7	14	48	1.70
18222475--18222583	39	2.9	37	83	5	130	28	6	13	51	1.66
18222606--18222734	18	6.7	20	76	11	110	29	4	13	52	1.60
18229587--18229632	21	2.0	23	88	12	69	60	8	2	28	1.38
18231841--18231892	6	8.8	6	78	4	61	28	1	5	63	1.28
18231841--18231890	18	2.9	17	91	5	82	28	2	6	64	1.28
18231909--18231956	24	2.0	24	84	8	62	79	2	12	6	1.01
18232997--18233044	20	2.5	20	80	6	55	10	4	6	79	1.05
18233018--18233079	17	3.5	17	75	12	54	22	1	1	74	1.00
18233267--18233320	20	2.9	18	76	10	63	38	5	11	44	1.63
18233611--18233660	17	2.7	19	80	17	61	42	4	4	50	1.40
18233611--18233664	20	2.9	18	82	17	67	44	3	3	48	1.38
18234557--18234613	20	2.8	21	89	2	89	21	7	1	70	1.20
18234576--18234662	27	3.2	26	72	18	79	22	9	2	65	1.33
18235508--18235553	23	2.0	23	86	4	65	19	0	10	69	1.17
18236475--18236667	75	2.6	75	79	7	214	38	15	12	33	1.85
18242370--18242418	5	9.8	5	77	22	50	0	22	0	77	0.77
18242368--18242418	20	2.6	20	88	11	79	0	21	0	78	0.75
18242365--18242417	14	3.8	14	85	11	65	0	22	0	77	0.77
18242848--18243001	7	22.6	7	68	17	76	15	0	38	45	1.51
18242899--18243009	13	8.1	14	72	16	65	18	0	34	46	1.50
18245519--18245649	51	2.6	50	78	8	133	37	13	18	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18245574--18245851	51	5.5	51	78	10	218	30	15	23	30	1.95
18245574--18245851	101	2.7	101	78	10	264	30	15	23	30	1.95
18245891--18246373	41	11.8	41	72	8	179	38	10	19	32	1.85
18246203--18246397	42	4.7	42	75	8	148	40	11	15	32	1.84
18246202--18246356	83	1.9	83	84	2	213	40	11	15	32	1.83
18248091--18248143	25	2.0	26	85	7	72	5	20	1	71	1.16
18257919--18257964	11	3.8	12	81	16	51	21	2	0	76	0.90
18267252--18267306	27	2.0	27	85	0	74	40	3	14	41	1.63
18269014--18269079	6	11.3	6	79	6	55	24	0	9	66	1.20
18269014--18269050	17	2.1	18	95	5	67	27	0	5	67	1.12
18269002--18269079	12	6.7	11	76	4	57	24	2	7	65	1.32
18269014--18269079	23	2.8	22	82	8	69	24	0	9	66	1.20
18273288--18273348	25	2.4	25	97	0	113	6	21	11	60	1.53
18274094--18274131	11	3.3	12	82	10	53	76	0	0	23	0.79
18276987--18277212	120	1.9	120	90	0	362	30	11	15	42	1.82
18282844--18282881	18	2.1	18	90	9	60	55	7	2	34	1.43
18288307--18288513	53	3.9	51	72	15	145	39	12	6	41	1.69
18291651--18291690	21	1.9	21	84	0	53	12	25	32	30	1.92
18291727--18291795	20	3.3	21	72	18	56	20	20	27	31	1.97
18301378--18301668	142	2.1	142	97	1	550	35	16	12	35	1.87
18304296--18304526	119	1.9	120	84	6	308	51	13	0	33	1.48
18304677--18304758	32	2.5	33	84	6	103	62	15	1	20	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18305698--18305731	18	2.0	17	88	11	52	52	0	0	47	1.00
18306954--18306995	18	2.3	18	84	8	50	42	7	2	47	1.43
18307133--18307180	18	2.8	17	81	12	53	37	2	2	58	1.22
18307273--18307366	44	2.1	45	83	11	115	56	4	4	35	1.38
18307314--18307389	32	2.4	32	84	2	109	55	6	2	35	1.40
18307615--18307717	32	3.3	31	76	18	81	40	3	5	49	1.45
18307793--18307837	17	2.8	15	80	12	54	64	6	2	26	1.30
18307832--18307873	17	2.5	17	80	7	50	57	0	0	42	0.99
18308091--18308134	17	2.6	17	80	13	56	63	4	2	29	1.26
18307606--18308498	297	3.0	297	98	0	1700	47	5	4	42	1.46
18308434--18308467	16	2.1	17	88	5	52	50	0	0	50	1.00
18320359--18320409	21	2.4	21	80	6	68	21	11	25	41	1.87
18325807--18325849	13	3.2	13	80	3	50	39	2	4	53	1.34
18328155--18328201	21	2.2	21	85	7	60	48	0	0	51	1.00
18329002--18329050	16	3.1	16	81	0	53	44	0	2	53	1.12
18330486--18330531	21	2.2	21	81	11	51	39	2	4	54	1.32
18330556--18330598	21	2.1	21	87	8	63	4	11	0	83	0.78
18332197--18332228	15	2.0	17	88	11	50	40	6	3	50	1.43
18335109--18335352	125	2.0	124	91	2	400	36	22	6	34	1.80
18339540--18339586	21	2.3	21	92	3	78	40	12	27	19	1.88
18342937--18343102	85	2.0	81	91	4	269	28	8	19	42	1.81
18346061--18346146	36	2.4	36	86	0	118	32	10	26	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18346680--18346746	6	11.0	6	74	3	53	23	1	10	64	1.34
18346681--18346746	12	5.4	12	72	3	60	22	1	10	65	1.32
18346680--18346746	18	3.7	18	77	2	71	23	1	10	64	1.34
18347793--18347846	20	2.7	20	82	8	56	18	5	3	72	1.20
18348493--18348535	18	2.4	18	80	0	50	51	2	2	44	1.27
18350864--18350920	25	2.3	24	84	6	69	12	22	8	56	1.63
18352041--18352071	14	2.2	14	100	0	62	0	19	0	80	0.71
18352041--18352072	15	2.2	15	94	5	57	0	18	0	81	0.70
18352023--18352070	13	3.6	13	78	10	53	0	22	0	77	0.78
18352231--18352284	22	2.5	22	84	0	63	22	9	33	35	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190