genome.fa.s223.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  36  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6283511--6283551	21	1.9	22	85	5	57	26	21	9	41	1.84
6283307--6283602	109	2.7	106	80	6	319	35	16	10	38	1.82
6284046--6284099	20	2.7	20	86	11	83	38	7	14	38	1.75
6288765--6288947	91	2.0	91	96	0	339	28	9	9	51	1.66
6290762--6290845	1	84.0	1	81	0	78	3	1	7	88	0.68
6290762--6290845	19	4.3	19	83	6	96	3	1	7	88	0.68
6290762--6290845	30	2.8	30	82	7	98	3	1	7	88	0.68
6290795--6290855	14	4.5	14	80	14	56	1	1	11	85	0.75
6295691--6295756	27	2.4	27	82	9	80	74	3	1	21	1.04
6295691--6295768	13	5.9	12	74	21	59	73	2	2	21	1.08
6295687--6295775	33	2.7	32	80	13	108	73	2	4	20	1.12
6295660--6295770	20	5.5	21	75	9	72	72	1	2	22	1.06
6296570--6296766	3	72.3	3	64	24	55	58	6	2	32	1.36
6296584--6296703	5	23.6	5	84	8	118	57	5	1	35	1.33
6296571--6296691	33	3.5	33	78	16	129	59	4	1	33	1.29
6296571--6296703	28	4.6	28	75	12	119	57	6	1	34	1.32
6296714--6296764	27	1.9	26	88	4	75	70	3	0	25	1.04
6296733--6296763	16	1.9	16	93	0	53	67	3	0	29	1.06
6296717--6296766	13	3.8	13	78	2	55	70	4	0	26	1.05
6297570--6297594	10	2.5	10	100	0	50	64	0	20	16	1.30
6297578--6297649	7	8.9	8	75	15	51	69	1	16	12	1.26
6297592--6297634	15	2.8	16	82	6	54	74	2	11	11	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6298581--6298623	17	2.5	17	92	7	70	30	18	9	41	1.82
6298814--6299098	38	7.5	38	77	4	216	32	11	17	37	1.87
6298812--6299056	114	2.1	114	80	3	260	32	12	17	37	1.87
6299377--6299425	20	2.3	22	75	10	57	18	2	8	71	1.21
6299929--6299984	15	3.5	16	83	11	62	23	0	25	51	1.48
6299929--6299969	18	2.4	18	88	11	61	21	0	29	48	1.50
6299941--6299989	15	3.4	14	80	5	53	18	0	20	61	1.35
6300397--6300462	13	5.5	11	76	20	53	12	7	3	77	1.09
6300397--6300475	38	2.1	36	86	4	104	11	7	3	77	1.11
6300433--6300493	28	2.2	28	83	11	74	14	9	1	73	1.16
6303061--6303137	40	2.0	40	87	5	113	42	14	3	38	1.64
6303410--6303470	23	2.7	23	87	5	88	34	8	8	49	1.62
6305034--6305063	11	2.9	10	90	9	51	13	0	6	80	0.91
6305641--6305680	21	1.9	21	85	10	55	70	7	2	20	1.24
6305636--6305683	13	3.8	12	78	10	51	70	6	2	20	1.19
6306456--6306670	43	5.1	43	79	13	180	45	17	12	24	1.83
6306483--6306665	87	2.1	87	80	9	205	48	15	11	24	1.78
6306714--6306810	40	2.3	41	85	7	133	48	15	9	26	1.75
6306665--6306810	40	3.6	40	77	7	132	47	15	12	25	1.80
6306822--6306868	22	2.1	22	92	0	76	38	17	21	23	1.93
6307123--6307163	21	2.0	21	90	0	64	29	9	17	43	1.80
6307128--6307171	21	2.1	21	82	0	52	34	15	13	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6307281--6307548	109	2.5	109	78	7	251	36	14	11	38	1.82
6307649--6307995	21	15.6	20	72	19	196	36	15	8	38	1.79
6307636--6307991	46	8.0	45	77	12	242	36	15	8	39	1.79
6307707--6307905	68	2.9	68	83	10	246	36	16	9	38	1.81
6307660--6307950	114	2.6	112	81	9	360	36	16	8	38	1.79
6307641--6307995	64	5.3	64	75	13	240	36	15	9	38	1.79
6309096--6309129	10	3.4	10	84	15	52	8	11	0	79	0.94
6314152--6314185	15	2.3	15	89	0	50	5	5	2	85	0.83
6324998--6325024	3	9.0	3	100	0	54	33	0	0	66	0.92
6326141--6326218	3	25.7	3	92	2	129	64	1	0	34	1.02
6326474--6326511	15	2.5	16	83	8	53	68	0	0	31	0.90
6338668--6338720	26	2.2	23	83	12	63	77	3	7	11	1.10
6339648--6339942	49	6.0	49	73	11	192	36	14	14	34	1.87
6339745--6339930	98	1.9	96	82	8	234	36	15	12	34	1.86
6340153--6340201	9	5.8	9	74	13	50	79	2	6	12	0.99
6340157--6340190	17	1.9	18	88	5	52	76	2	5	14	1.09
6340724--6340770	24	2.0	24	87	4	69	68	19	4	8	1.33
6341859--6341891	3	11.0	3	100	0	66	33	0	0	66	0.92
6343007--6343041	6	5.8	6	96	0	61	54	0	0	45	0.99
6347849--6347884	16	2.2	16	90	0	54	13	13	5	66	1.41
6349784--6349817	13	2.6	14	86	13	54	20	2	0	76	0.92
6349769--6349815	18	2.5	19	83	13	53	21	4	2	72	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6350819--6350853	15	2.2	16	90	5	54	20	5	0	74	1.02
6350957--6351251	87	3.4	85	66	13	213	51	6	7	33	1.57
6350960--6351289	175	1.9	173	93	2	572	51	6	7	33	1.56
6351204--6351417	115	1.9	115	84	2	286	47	8	9	34	1.67
6352918--6352964	24	2.0	24	95	0	85	17	19	17	46	1.84
6357284--6357321	20	1.9	20	88	0	58	71	5	13	10	1.30
6362300--6362335	13	2.8	13	91	8	56	86	0	13	0	0.58
6362926--6362979	28	2.0	27	86	10	76	29	14	9	46	1.76
6363127--6363188	29	2.1	29	85	5	81	61	1	0	37	1.06
6363137--6363204	28	2.4	29	80	9	77	60	2	0	36	1.12
6363135--6363204	29	2.4	29	79	9	81	60	2	0	37	1.12
6363215--6363250	11	3.4	10	88	11	54	33	0	0	66	0.92
6363215--6363250	10	3.3	11	92	7	56	33	0	0	66	0.92
6364608--6364639	6	5.2	6	92	7	55	34	0	0	65	0.93
6365867--6365902	17	2.1	17	100	0	72	44	11	27	16	1.82
6368677--6368812	63	2.2	62	82	6	168	47	11	3	38	1.57
6369004--6369246	62	4.0	61	74	9	206	44	11	8	35	1.71
6372391--6372452	28	2.2	29	80	11	74	37	6	3	53	1.43
6373231--6373359	3	43.7	3	87	9	149	27	0	3	67	1.13
6373659--6373711	8	7.1	7	91	4	70	52	0	0	47	1.00
6373662--6373709	15	3.1	15	91	5	78	47	0	0	52	1.00
6373662--6373706	8	5.8	8	97	2	83	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6374199--6374276	27	2.9	26	77	7	84	2	20	0	76	0.90
6374211--6374262	13	3.6	15	80	17	65	3	13	0	82	0.80
6375869--6375929	22	2.8	22	85	2	79	24	8	31	36	1.85
6375915--6376535	126	4.9	126	82	6	706	33	14	17	35	1.90
6376137--6376189	22	2.4	22	90	0	79	28	11	24	35	1.90
6376265--6376318	22	2.5	21	88	5	81	31	9	25	33	1.88
6375912--6376524	251	2.4	252	82	6	742	32	14	17	35	1.90
6376536--6376596	32	1.9	32	86	6	88	19	13	27	39	1.89
6376616--6376671	22	2.3	26	70	26	66	23	12	30	33	1.92
6376622--6376687	22	3.0	22	84	0	87	24	15	28	31	1.95
6376913--6376955	20	2.1	21	79	12	54	9	13	0	76	1.01
6377360--6377418	26	2.3	25	80	8	64	27	13	23	35	1.92
6378959--6379013	10	5.3	10	78	20	51	9	10	1	78	1.05
6379979--6380043	32	2.0	32	90	0	103	40	10	12	36	1.78
6380155--6380193	16	2.5	15	84	12	51	10	0	2	87	0.65
6380158--6380194	15	2.3	15	90	9	56	10	0	2	86	0.67
6384649--6384722	32	2.4	32	78	15	84	18	13	4	63	1.45
6386482--6386549	36	1.9	34	82	5	82	41	19	8	30	1.82
6386544--6386652	18	5.8	20	76	19	87	49	12	5	32	1.64
6386544--6386651	37	3.0	34	82	10	110	49	12	5	32	1.64
6386544--6386654	55	2.0	54	81	15	129	49	12	5	32	1.63
6386759--6386806	24	2.0	25	87	4	71	45	16	6	31	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6386951--6387003	16	3.3	16	69	10	54	54	7	5	32	1.52
6386931--6387003	32	2.3	32	100	0	146	53	6	6	32	1.54
6386950--6387028	23	4.2	20	66	30	66	53	8	6	31	1.57
6386984--6387026	23	1.9	23	95	4	79	51	11	6	30	1.65
6386894--6387058	87	1.9	85	91	2	267	52	9	6	31	1.59
6386979--6387055	20	4.1	20	66	32	62	51	11	6	29	1.63
6386953--6387058	55	1.9	56	94	1	187	51	10	6	31	1.61
6388122--6388168	17	2.7	17	86	3	67	63	8	2	25	1.34
6389680--6389717	6	6.5	6	91	8	53	18	0	0	81	0.69
6391852--6391911	31	1.9	31	93	0	102	36	15	8	40	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190