genome.fa.s223.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  26  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4385748--4385786	14	2.6	16	88	8	55	30	7	0	61	1.24
4385799--4385857	29	2.0	29	83	0	73	47	8	0	44	1.33
4391544--4391577	10	3.4	10	87	0	50	41	41	2	14	1.61
4395524--4395548	5	5.0	5	100	0	50	60	0	0	40	0.97
4398894--4398999	55	1.9	54	90	1	167	37	16	15	31	1.89
4400507--4400557	25	2.0	25	92	0	84	37	3	19	39	1.70
4401602--4401663	4	15.5	4	93	0	61	38	0	11	50	1.39
4401602--4401663	12	5.2	12	90	0	70	38	0	11	50	1.39
4405861--4405900	3	13.3	3	94	0	71	30	67	2	0	1.04
4405991--4406016	6	4.3	6	100	0	52	15	34	0	50	1.45
4407326--4407368	12	3.8	12	87	6	63	41	0	0	58	0.98
4407362--4407408	23	2.1	23	96	4	87	46	0	0	53	1.00
4407358--4407410	23	2.5	21	88	11	81	49	0	0	50	1.00
4409300--4409367	28	2.4	29	75	7	68	60	2	2	33	1.27
4413519--4413644	64	2.0	63	93	4	218	33	12	13	40	1.82
4414939--4414994	2	28.0	2	81	0	58	50	3	7	39	1.47
4415518--4415557	21	1.9	21	84	0	53	50	5	27	17	1.67
4417578--4417656	19	4.2	18	75	6	59	60	5	1	32	1.26
4417553--4417648	37	2.6	37	85	5	113	60	5	2	32	1.30
4417694--4417736	20	2.2	20	91	4	70	58	4	4	32	1.39
4417796--4417850	29	1.9	30	85	7	78	70	3	1	23	1.12
4417832--4417863	14	2.4	14	90	10	50	75	0	3	21	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4417911--4417970	25	2.4	26	78	10	72	65	3	1	30	1.19
4418083--4418126	17	2.4	19	81	11	56	61	0	6	31	1.22
4418086--4418125	18	2.3	18	86	4	55	62	0	7	30	1.23
4418215--4418274	18	3.3	17	77	11	57	35	5	1	58	1.30
4418177--4418246	27	2.5	29	76	6	72	28	5	2	62	1.32
4418464--4418516	16	3.1	17	83	8	54	30	1	0	67	1.01
4422769--4422823	18	3.2	18	80	15	71	38	0	7	54	1.28
4422778--4422833	15	3.5	15	73	17	51	33	0	5	60	1.19
4422760--4422843	33	2.5	34	78	7	109	40	0	4	54	1.21
4431005--4431048	19	2.3	19	84	0	52	43	2	2	52	1.26
4448920--4449110	95	2.0	96	97	1	366	35	8	15	40	1.77
4449867--4449991	62	2.0	61	95	1	223	38	9	10	41	1.72
4452667--4452730	24	2.7	24	85	0	92	42	7	7	42	1.63
4456689--4456823	16	8.4	16	69	11	69	25	8	6	60	1.50
4457034--4457067	7	5.0	7	85	7	52	70	2	0	26	1.01
4457159--4457401	120	2.0	120	94	1	425	34	4	15	45	1.68
4457423--4457464	18	2.3	19	80	12	52	19	2	2	76	1.01
4457868--4457902	15	2.4	15	90	4	54	31	14	8	45	1.75
4458300--4458341	17	2.3	19	88	8	61	54	0	2	42	1.13
4458852--4458924	18	4.0	17	71	15	56	46	0	4	49	1.21
4461207--4461273	3	22.3	3	90	0	107	28	0	4	67	1.10
4471356--4471402	24	2.0	24	83	8	60	55	6	19	19	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4471541--4471606	22	3.0	22	84	0	96	42	10	12	34	1.77
4473170--4473201	12	2.7	12	95	0	55	31	18	25	25	1.98
4475587--4475630	22	2.0	22	90	0	70	43	11	11	34	1.77
4488667--4489537	432	2.0	432	98	0	1688	27	29	11	31	1.92
4493059--4493105	19	2.3	20	79	17	53	0	44	4	51	1.21
4493268--4493310	12	3.6	12	81	12	52	0	32	0	67	0.91
4493829--4494428	309	2.0	304	82	5	733	24	31	12	32	1.91
4495324--4495387	20	3.0	21	75	11	60	62	0	1	35	1.05
4495997--4496044	21	2.6	17	78	18	51	41	0	0	58	0.98
4496371--4496409	21	1.9	20	84	5	51	41	12	7	38	1.72
4497812--4497850	20	2.0	20	94	0	69	41	17	10	30	1.83
4504802--4504848	24	2.0	24	83	8	60	59	0	6	34	1.23
4509704--4509752	21	2.3	22	89	3	73	38	4	4	53	1.39
4509785--4509834	22	2.3	22	78	0	55	42	10	6	42	1.63
4509943--4509984	22	1.9	22	85	0	57	21	7	14	57	1.61
4509966--4510114	22	6.8	22	79	6	106	39	7	8	44	1.62
4509965--4510109	44	3.3	43	75	5	130	38	6	8	45	1.62
4510575--4510711	22	6.2	22	77	5	107	40	6	5	46	1.54
4510597--4510711	44	2.6	43	82	10	142	40	5	6	46	1.53
4510573--4510897	66	4.8	65	71	15	169	40	7	7	45	1.59
4510597--4510743	44	3.3	44	82	5	136	39	4	9	46	1.58
4510654--4510733	22	3.6	22	76	6	63	37	2	11	48	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4510757--4510896	22	6.4	22	83	3	102	40	8	5	45	1.56
4510617--4510877	140	1.9	140	80	6	305	39	6	8	45	1.61
4510801--4511304	22	22.9	22	69	12	196	33	7	8	50	1.60
4510998--4511100	45	2.3	45	80	9	104	35	6	7	49	1.58
4510824--4511133	112	2.8	106	77	7	284	34	8	7	49	1.62
4510759--4511329	44	12.9	44	72	10	186	34	8	7	49	1.60
4513035--4513147	22	5.2	22	71	10	70	39	4	8	46	1.55
4513308--4513386	22	3.5	22	74	3	77	37	10	5	46	1.60
4513298--4513393	22	4.3	22	72	4	75	39	10	5	44	1.61
4513611--4513711	22	4.6	22	82	3	80	40	7	3	47	1.51
4513661--4513797	22	6.3	21	79	6	73	41	3	9	45	1.54
4513694--4513812	22	5.4	22	79	6	107	40	4	8	47	1.53
4513674--4513812	44	3.2	43	78	7	111	41	4	7	46	1.53
4513811--4513875	22	3.0	22	88	0	85	43	10	4	41	1.60
4513821--4513884	22	2.9	22	88	0	74	39	12	6	42	1.68
4513902--4514476	22	26.3	22	68	9	95	35	8	6	49	1.58
4514110--4514423	44	7.2	44	73	9	153	34	8	6	50	1.58
4514789--4514858	22	3.2	22	74	11	72	35	8	2	52	1.47
4514956--4515003	22	2.2	22	84	0	60	37	6	2	54	1.38
4516736--4516787	23	2.2	24	83	12	65	34	1	5	57	1.33
4517233--4517522	153	1.9	153	88	0	436	47	6	5	40	1.53
4518062--4518099	13	3.0	13	80	3	51	42	0	2	55	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4520239--4520305	32	2.1	32	94	0	116	41	26	14	16	1.87
4521165--4521657	269	1.8	270	90	1	801	44	7	5	42	1.55
4522981--4523060	33	2.5	32	85	4	99	31	11	11	46	1.75
4526654--4526679	2	13.0	2	100	0	52	50	0	0	50	1.00
4527807--4527863	29	2.0	29	82	6	71	50	3	0	45	1.18
4527818--4527876	29	2.1	28	83	3	73	55	3	0	40	1.16
4538597--4538650	19	2.8	20	73	18	53	57	0	1	40	1.09
4540826--4540877	28	2.0	28	85	11	74	44	0	0	55	0.99
4540917--4540969	2	27.0	2	79	11	56	56	1	0	41	1.10
4542242--4542290	18	2.8	17	81	9	53	20	8	0	71	1.11
4542366--4542402	3	12.7	3	94	5	67	32	0	0	67	0.91
4542452--4542487	13	2.8	13	86	0	54	11	5	2	80	0.98
4543610--4543650	16	2.5	16	88	4	55	34	2	2	60	1.23
4546669--4546712	21	2.1	21	82	0	52	18	2	4	75	1.09
4546681--4546729	18	2.6	18	78	12	53	16	2	2	79	0.92
4546755--4546805	12	4.2	12	78	9	59	50	3	0	45	1.20
4547389--4547422	16	2.1	16	94	0	59	67	14	17	0	1.23
4547754--4547778	5	5.0	5	100	0	50	20	0	0	80	0.72
4547737--4547808	36	2.1	32	85	10	90	34	1	1	62	1.13
4548382--4548416	18	1.9	19	88	11	56	48	8	0	42	1.33
4548917--4548959	3	14.3	3	100	0	86	32	0	0	67	0.91
4550187--4550234	3	15.7	3	80	8	53	68	0	4	27	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4551995--4552034	16	2.5	16	84	11	55	80	0	2	17	0.83
4553529--4553556	3	9.3	3	100	0	56	67	0	0	32	0.91
4553662--4553693	7	4.7	7	92	7	57	75	12	0	12	1.06
4553662--4553693	13	2.4	14	94	5	57	75	12	0	12	1.06
4558320--4558488	84	2.0	84	80	2	187	29	15	17	37	1.91
4558851--4558935	31	2.7	32	80	7	93	17	23	12	45	1.83
4559319--4559464	34	4.3	34	72	12	111	23	16	14	45	1.84
4559538--4559610	33	2.2	33	80	4	85	26	16	12	45	1.82
4559834--4559897	16	3.9	16	78	10	58	18	4	3	73	1.14
4559835--4559872	17	2.3	17	86	4	51	18	2	5	73	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190