genome.fa.s223.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  106  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16573752--16573804	26	2.0	26	92	0	88	30	22	16	30	1.96
16574656--16574708	26	2.0	26	92	0	88	32	24	16	26	1.97
16575551--16575604	26	2.1	26	100	0	108	24	25	22	27	2.00
16577491--16580461	901	3.3	889	85	5	3853	25	24	24	25	2.00
16582232--16582284	26	2.0	26	85	0	70	26	20	24	28	1.99
16581370--16584498	874	3.5	872	83	6	3715	24	24	25	26	2.00
16584006--16584057	25	2.0	26	92	3	88	28	21	23	26	1.99
16584549--16584599	26	2.0	24	88	7	75	31	11	23	33	1.91
16584557--16584607	26	2.0	26	88	0	75	29	15	23	31	1.95
16585458--16585513	26	2.2	26	96	0	103	26	17	25	30	1.97
16584501--16588155	905	4.1	903	84	5	4636	24	24	24	25	2.00
16590236--16590288	26	2.0	26	92	0	88	28	24	18	28	1.98
16591142--16591193	26	2.0	26	96	0	95	28	26	17	26	1.97
16592030--16592082	26	2.0	26	88	0	79	28	22	18	30	1.98
16593042--16593095	26	2.1	26	92	0	90	24	27	20	27	1.99
16588380--16625630	903	41.2	893	74	11	21096	25	24	24	25	2.00
16595728--16595780	26	2.0	26	96	0	97	26	24	20	28	1.99
16596629--16596681	26	2.0	26	96	0	97	26	24	20	28	1.99
16600187--16600239	26	2.0	26	96	0	97	26	24	20	28	1.99
16603763--16603815	26	2.0	26	92	0	88	28	20	20	30	1.98
16607184--16607236	26	2.0	26	96	0	97	26	24	20	28	1.99
16605425--16609735	890	4.8	898	84	5	5355	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16608071--16608124	26	2.1	26	92	0	90	25	24	20	29	1.99
16608979--16609031	26	2.0	26	96	0	97	28	24	20	26	1.99
16610550--16610602	26	2.0	26	96	0	97	26	24	20	28	1.99
16613205--16613257	26	2.0	26	100	0	106	26	26	20	26	1.99
16614105--16614157	26	2.0	26	85	7	72	28	24	18	28	1.98
16614976--16615028	26	2.0	26	100	0	106	26	26	20	26	1.99
16609831--16624725	891	16.9	874	83	7	15912	25	24	24	25	2.00
16615846--16615895	26	1.9	26	95	0	91	22	26	22	30	1.99
16617611--16617663	26	2.0	26	92	0	88	28	24	18	28	1.98
16619326--16619378	26	2.0	26	100	0	106	26	26	20	26	1.99
16621100--16621151	26	2.0	26	84	0	68	32	25	13	28	1.93
16621990--16622042	26	2.0	26	88	0	79	32	22	15	30	1.94
16625482--16625534	26	2.0	26	96	0	97	28	26	18	26	1.98
16625796--16625848	26	2.0	26	96	0	97	26	24	20	28	1.99
16626525--16626577	26	2.0	26	96	0	97	26	24	20	28	1.99
16627385--16627437	26	2.0	26	92	0	88	26	28	18	26	1.98
16628094--16628146	26	2.0	26	88	0	79	30	22	18	28	1.98
16628982--16629034	26	2.0	26	96	0	97	28	26	18	26	1.98
16628063--16630315	902	2.5	890	86	4	3013	25	23	24	26	2.00
16630418--16640894	903	11.8	869	73	12	5281	26	24	23	25	2.00
16632164--16632215	26	2.0	26	92	3	88	28	26	17	26	1.97
16631295--16640894	900	10.8	887	74	11	5309	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16633019--16633071	26	2.0	26	88	0	79	32	26	15	26	1.95
16630365--16633784	866	3.9	857	82	8	3329	26	24	24	25	2.00
16634220--16634272	26	2.0	26	96	0	97	28	26	18	26	1.98
16636593--16636645	26	2.0	26	100	0	106	26	26	20	26	1.99
16637493--16637545	26	2.0	26	96	0	97	26	26	18	28	1.98
16634942--16640926	900	6.7	895	84	5	6927	26	24	23	25	2.00
16638374--16638426	26	2.0	26	92	0	88	30	24	16	28	1.97
16639279--16639331	26	2.0	26	96	0	97	28	26	16	28	1.97
16641693--16641743	26	2.0	26	96	0	93	25	25	21	27	1.99
16642579--16642631	26	2.0	26	85	7	72	30	24	18	26	1.98
16640926--16643231	897	2.6	898	87	3	3322	26	24	23	25	2.00
16643370--16643422	26	2.0	26	88	0	79	26	24	20	28	1.99
16643396--16644876	714	2.1	716	90	1	2342	26	24	23	25	2.00
16644988--16645039	26	2.0	26	96	0	95	28	26	17	26	1.97
16646198--16646250	26	2.0	26	96	0	97	28	26	18	26	1.98
16647088--16647140	26	2.0	26	96	0	97	26	24	20	28	1.99
16647975--16648026	25	2.0	26	88	3	79	30	25	17	26	1.97
16646110--16649003	890	3.3	874	86	4	3783	24	25	24	25	2.00
16651892--16651956	26	2.5	26	100	0	130	30	18	24	26	1.98
16653487--16653568	26	3.2	26	98	0	155	26	18	25	29	1.98
16655840--16655892	26	2.0	26	96	0	97	26	18	26	28	1.98
16654548--16656810	899	2.5	904	85	5	2975	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16656727--16656779	26	2.0	26	92	0	88	28	18	24	28	1.98
16657403--16657455	26	2.0	26	96	0	97	26	18	26	28	1.98
16657000--16664413	890	8.4	863	82	8	7384	25	24	24	25	2.00
16660013--16660065	26	2.0	26	96	0	97	26	15	26	32	1.95
16660911--16660989	26	3.0	26	96	0	140	26	17	26	29	1.98
16662730--16662782	26	2.0	26	96	0	97	26	18	26	28	1.98
16663622--16663700	26	3.0	26	98	0	149	29	20	24	26	1.99
16667812--16667861	26	1.9	26	87	0	73	32	22	20	26	1.98
16666317--16668730	890	2.7	892	85	5	3037	26	23	23	27	2.00
16664568--16668730	829	4.8	887	81	9	3936	26	23	23	26	2.00
16669427--16669478	26	2.0	26	88	0	77	26	13	26	32	1.94
16671198--16671250	26	2.0	26	92	0	88	28	18	24	28	1.98
16668686--16671784	903	3.5	897	84	5	4154	25	23	25	25	2.00
16671929--16672007	26	3.0	26	96	0	140	26	21	24	27	1.99
16672862--16672912	26	2.0	26	92	0	84	31	21	17	29	1.96
16673764--16673816	26	2.0	26	88	0	79	26	22	24	26	2.00
16675543--16675595	26	2.0	26	100	0	106	26	20	26	26	1.99
16677302--16677380	26	3.0	26	94	0	140	26	17	25	30	1.97
16678214--16678266	26	2.0	26	96	0	97	28	20	24	26	1.99
16679113--16679165	26	2.0	26	92	0	88	28	18	24	28	1.98
16679994--16680045	26	2.0	26	96	0	95	28	15	25	30	1.96
16680888--16680937	26	1.9	26	95	0	91	32	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16681789--16681841	26	2.0	26	92	0	88	28	18	24	28	1.98
16682326--16682365	13	3.0	13	89	10	55	52	20	5	22	1.65
16682706--16682755	26	1.9	26	92	8	84	32	20	22	26	1.98
16682700--16682892	104	1.9	104	91	0	314	26	24	25	22	2.00
16683673--16694363	898	12.1	900	84	5	13036	25	24	24	25	2.00
16685439--16685491	26	2.0	26	96	0	97	26	18	26	28	1.98
16686337--16686389	26	2.0	26	96	0	97	28	20	24	26	1.99
16687235--16687287	26	2.0	26	100	0	106	26	20	26	26	1.99
16688131--16688183	26	2.0	26	88	0	79	26	20	22	30	1.98
16688985--16689037	26	2.0	26	88	0	79	28	20	22	28	1.99
16692491--16692543	26	2.0	26	92	0	88	28	20	22	28	1.99
16695110--16695162	26	2.0	26	96	0	97	26	18	26	28	1.98
16693539--16695193	830	2.0	829	88	1	2481	26	24	23	25	2.00
16695539--16695579	19	2.1	20	95	4	75	29	17	4	48	1.67
16694367--16699938	902	6.2	873	85	4	6162	25	24	25	25	2.00
16696879--16696931	26	2.0	26	96	0	97	26	22	26	24	2.00
16698683--16698735	26	2.0	26	92	0	88	28	18	24	28	1.98
16702496--16702548	26	2.0	26	92	0	88	26	16	28	28	1.97
16701035--16703425	899	2.7	898	88	1	3407	25	24	24	26	2.00
16703399--16703750	185	1.9	185	85	1	481	20	28	29	21	1.98
16703804--16704792	495	2.0	495	92	1	1653	28	18	21	31	1.97
16706567--16706619	26	2.0	26	92	0	88	24	22	24	28	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16704885--16709303	904	4.9	887	85	4	5524	25	24	24	25	2.00
16707459--16707511	26	2.0	26	92	0	88	30	20	22	26	1.98
16708374--16708426	26	2.0	26	92	0	88	28	22	24	24	2.00
16710849--16710901	26	2.0	26	96	0	97	26	18	26	28	1.98
16711711--16711763	26	2.0	26	96	0	97	28	20	24	26	1.99
16712605--16712657	26	2.0	26	100	0	106	26	20	26	26	1.99
16713502--16713554	26	2.0	26	88	0	79	28	20	24	26	1.99
16715265--16715317	26	2.0	26	88	0	79	32	20	22	24	1.98
16709248--16718354	894	10.4	868	83	5	10526	25	23	25	25	2.00
16720064--16720116	26	2.0	26	96	0	97	26	18	26	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190