genome.fa.s223.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  67  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11143269--11143318	26	1.9	26	91	0	82	26	20	32	22	1.98
11143843--11144211	159	2.3	159	81	1	400	24	27	27	20	1.99
11144834--11144886	26	2.0	26	92	0	88	28	18	24	28	1.98
11145728--11145778	26	2.0	26	92	0	84	31	19	23	25	1.98
11149020--11149072	26	2.0	26	96	0	97	26	18	26	28	1.98
11146524--11152801	864	7.1	861	80	8	6199	25	23	24	26	2.00
11150787--11150839	26	2.0	26	85	0	70	26	16	26	30	1.97
11152592--11152642	26	2.0	26	88	7	77	31	17	27	23	1.97
11152775--11152827	26	2.0	26	96	0	97	28	15	26	30	1.96
11152569--11152978	185	2.2	185	82	4	486	24	26	27	21	1.99
11157286--11157364	26	3.0	26	88	0	122	27	16	25	30	1.97
11157338--11157705	159	2.3	158	85	3	463	23	28	27	19	1.99
11157471--11160130	877	3.1	858	83	6	3277	25	24	24	25	2.00
11160104--11160156	26	2.0	26	92	0	88	26	20	26	26	1.99
11160289--11160341	26	2.0	26	92	0	88	28	18	24	28	1.98
11160084--11160500	185	2.2	184	86	3	577	23	28	26	21	1.99
11161187--11161236	26	1.9	26	95	0	91	28	20	28	24	1.99
11162088--11162140	26	2.0	26	96	0	97	28	20	24	26	1.99
11160286--11163067	901	3.1	898	90	1	4155	25	24	24	25	2.00
11162991--11163043	26	2.0	26	92	0	88	28	22	24	24	2.00
11163726--11163777	25	2.0	26	92	3	88	28	21	23	26	1.99
11164028--11164792	381	2.0	381	87	2	1117	27	17	18	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11165004--11165056	26	2.0	26	96	0	97	28	20	24	26	1.99
11165907--11165959	26	2.0	26	96	0	97	28	20	24	26	1.99
11164409--11168679	892	4.7	895	86	4	5619	25	24	24	26	2.00
11166799--11166877	26	3.0	26	96	0	149	26	18	26	27	1.98
11167727--11167779	26	2.0	26	96	0	97	28	20	22	28	1.99
11168603--11168652	26	1.9	26	87	0	73	32	20	24	24	1.98
11169347--11169399	26	2.0	26	100	0	106	26	20	26	26	1.99
11170245--11170297	26	2.0	26	92	0	88	26	20	26	26	1.99
11170395--11170710	163	1.9	166	85	6	433	22	26	31	19	1.98
11171308--11171360	26	2.0	26	88	0	79	30	18	24	26	1.98
11172052--11172104	26	2.0	26	96	0	97	26	18	26	28	1.98
11173494--11173545	26	2.0	26	96	0	95	28	26	17	26	1.97
11173583--11174595	505	2.0	508	89	1	1543	28	21	23	27	1.99
11175777--11175829	26	2.0	26	96	0	97	26	28	20	24	1.99
11177756--11177808	26	2.0	26	96	0	97	28	26	18	26	1.98
11178646--11178698	26	2.0	26	96	0	97	28	26	18	26	1.98
11179549--11179601	26	2.0	26	100	0	106	26	26	20	26	1.99
11177578--11199045	895	24.1	890	79	9	19020	25	25	24	25	2.00
11182173--11182225	26	2.0	26	92	0	88	28	24	18	28	1.98
11185096--11185148	26	2.0	26	96	0	97	26	24	20	28	1.99
11185989--11186041	26	2.0	26	100	0	106	26	26	20	26	1.99
11186877--11186929	26	2.0	26	88	0	79	30	24	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11184225--11199045	887	16.8	882	84	7	16855	25	24	24	25	2.00
11191339--11191391	26	2.0	26	100	0	106	26	26	20	26	1.99
11192203--11192255	26	2.0	26	96	0	97	26	24	20	28	1.99
11193972--11194024	26	2.0	26	96	0	97	26	24	20	28	1.99
11196527--11196576	26	1.9	26	91	0	82	26	26	18	30	1.98
11199104--11199156	26	2.0	26	85	0	70	30	20	18	30	1.97
11205923--11205975	26	2.0	26	92	7	90	32	22	18	26	1.97
11207352--11207719	159	2.3	159	83	1	434	20	26	27	25	1.99
11208563--11208616	26	2.0	28	86	10	78	25	22	22	29	1.99
11208284--11209943	833	2.0	830	83	5	2135	24	25	24	25	2.00
11210300--11210349	26	1.9	26	91	0	82	30	24	18	28	1.97
11211203--11211255	26	2.0	26	88	0	79	26	24	18	30	1.98
11212095--11212147	26	2.0	26	92	0	88	28	20	20	30	1.98
11213883--11213938	26	2.2	26	90	6	87	30	21	19	28	1.98
11209118--11216050	894	7.8	897	84	4	8345	25	25	24	25	2.00
11214777--11214830	26	2.0	27	92	3	92	27	24	20	27	1.99
11217058--11217110	26	2.0	26	96	0	97	26	24	20	28	1.99
11220005--11220083	26	3.0	26	94	3	133	32	22	17	26	1.96
11221461--11221828	159	2.3	159	83	1	443	20	27	27	24	1.99
11221802--11221854	26	2.0	26	85	7	72	28	26	16	28	1.97
11222672--11222724	26	2.0	26	92	0	88	26	24	22	26	2.00
11224475--11224524	26	1.9	26	91	0	82	30	24	18	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11222198--11236184	903	15.6	901	84	4	16980	25	24	24	25	2.00
11226949--11226990	4	10.5	4	100	0	84	0	73	26	0	0.83
11227168--11227220	25	2.1	26	85	3	72	24	22	24	28	2.00
11228069--11228129	30	2.1	27	82	14	70	31	22	16	29	1.96
11228975--11229027	26	2.0	26	96	0	97	26	24	20	28	1.99
11233430--11233482	26	2.0	26	92	0	88	28	22	20	28	1.99
11234324--11234374	26	2.0	26	96	0	93	25	25	19	29	1.99
11235228--11235280	26	2.0	26	88	0	79	28	26	18	26	1.98
11236130--11236182	26	2.0	26	92	0	88	26	24	22	26	2.00
11236482--11236533	26	2.0	25	88	3	77	26	25	21	26	1.99
11239790--11239866	26	3.0	26	98	0	145	29	25	16	27	1.97
11240714--11240766	26	2.0	26	96	0	97	26	24	22	26	2.00
11241401--11246203	799	6.1	800	84	5	6304	27	23	23	25	2.00
11243085--11243137	26	2.0	26	92	0	88	26	26	20	26	1.99
11244310--11244354	14	3.5	14	71	22	53	53	13	8	24	1.68
11244310--11244364	24	2.3	24	100	0	110	54	10	7	27	1.61
11246386--11246435	26	1.9	26	95	0	91	28	28	14	30	1.95
11247984--11248036	26	2.0	26	96	0	97	26	24	20	28	1.99
11248877--11248929	26	2.0	26	92	0	88	28	24	18	28	1.98
11247121--11250245	889	3.5	879	84	7	3629	25	24	23	25	2.00
11250325--11250375	26	2.0	26	100	0	102	25	27	19	27	1.99
11251478--11251530	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11250768--11256837	894	6.9	890	84	4	7475	25	23	24	26	2.00
11253259--11253311	26	2.0	26	96	0	97	28	18	26	26	1.98
11255011--11255063	26	2.0	26	96	0	97	28	16	24	30	1.97
11255886--11255938	26	2.0	26	96	0	97	26	18	26	28	1.98
11257530--11257582	26	2.0	26	100	0	106	30	20	22	26	1.98
11259298--11259350	26	2.0	26	89	7	81	24	20	26	28	1.99
11260200--11260252	26	2.0	26	92	0	88	26	18	24	30	1.98
11256902--11263649	885	7.6	889	85	5	8383	25	23	25	26	2.00
11264369--11264421	26	2.0	26	92	0	88	32	20	18	28	1.97
11263656--11267985	902	4.8	902	85	4	5602	25	24	24	25	2.00
11266178--11266231	26	2.1	26	89	0	81	31	20	22	25	1.98
11267063--11267114	26	2.0	26	100	0	104	26	15	26	30	1.96
11271154--11271206	26	2.0	26	92	0	88	26	20	24	28	1.99
11270277--11281064	898	11.9	896	80	8	9817	25	23	24	25	2.00
11268522--11273846	876	6.0	878	84	5	6218	25	24	24	25	2.00
11273820--11273870	26	2.0	26	92	0	84	27	15	23	33	1.95
11274836--11274886	26	2.0	26	92	0	84	27	15	23	33	1.95
11275850--11275902	26	2.0	26	92	0	88	28	18	24	28	1.98
11274973--11281064	902	6.9	898	85	4	7694	25	23	24	25	2.00
11277638--11277690	26	2.0	26	88	0	79	28	18	22	30	1.98
11279403--11279455	26	2.0	26	96	0	97	26	18	26	28	1.98
11280283--11280332	26	1.9	26	95	0	91	30	18	28	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11283444--11283496	26	2.0	26	92	0	88	28	22	22	26	1.99
11282726--11286214	903	3.9	899	87	2	4865	25	24	24	25	2.00
11284347--11284399	26	2.0	26	96	0	97	32	20	24	22	1.98
11286138--11286190	26	2.0	26	96	0	97	26	18	26	28	1.98
11286883--11286935	26	2.0	26	96	0	97	28	20	24	26	1.99
11287789--11287841	26	2.0	26	92	0	88	26	16	26	30	1.97
11286164--11291497	903	5.9	899	86	2	7143	25	23	24	25	2.00
11288692--11288744	26	2.0	26	92	0	88	28	18	24	28	1.98
11289588--11289638	26	2.0	26	84	0	66	29	15	27	27	1.96
11292056--11292108	26	2.0	26	92	0	88	28	18	24	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190