genome.fa.s223.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  127  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20001318--20001834	146	3.7	147	77	11	406	32	12	13	41	1.81
20001488--20001731	131	1.9	131	85	3	339	34	15	12	38	1.84
20012144--20012174	16	1.9	16	100	0	62	29	12	12	45	1.80
20017569--20017838	50	5.3	50	80	7	287	36	13	15	34	1.87
20017569--20017838	100	2.7	100	84	4	328	36	13	15	34	1.87
20018453--20018826	145	2.6	142	87	5	511	32	12	12	42	1.80
20018487--20018826	142	2.4	144	87	5	476	33	12	12	42	1.80
20021731--20021770	13	2.9	14	79	20	57	22	5	0	72	1.04
20031157--20031198	18	2.3	18	100	0	84	52	4	28	14	1.62
20034395--20034438	18	2.4	19	81	11	56	22	2	29	45	1.65
20034450--20034494	18	2.6	16	83	16	63	22	6	28	42	1.79
20035426--20035468	10	4.2	10	83	13	52	2	27	0	69	1.00
20035432--20035485	22	2.5	20	75	16	54	5	29	1	62	1.28
20036470--20036522	20	2.6	20	81	3	61	32	5	11	50	1.61
20036856--20037237	49	8.0	47	77	8	314	42	14	13	29	1.84
20036858--20037220	94	3.8	95	75	13	293	42	14	13	29	1.83
20037214--20037287	25	2.9	25	74	6	67	37	8	12	41	1.72
20037858--20037905	14	3.3	15	78	21	57	22	29	0	47	1.51
20038560--20038590	8	3.9	8	95	0	53	0	6	3	90	0.55
20038555--20038593	19	2.1	19	90	9	62	0	7	2	89	0.56
20053593--20053728	71	1.9	71	92	0	227	33	16	17	33	1.92
20055800--20055936	32	4.6	32	73	18	123	56	11	4	27	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20055888--20055920	12	2.8	12	95	0	57	63	15	0	21	1.30
20055900--20055989	20	4.1	20	74	20	81	58	10	2	28	1.42
20055866--20055971	32	3.4	32	82	5	103	59	9	2	28	1.43
20056016--20056061	20	2.4	18	79	10	56	56	8	4	30	1.49
20056923--20057406	42	11.4	42	81	6	503	37	20	14	27	1.91
20056928--20057406	85	5.6	82	81	6	480	38	20	14	26	1.91
20056923--20057359	127	3.4	127	83	5	535	37	20	14	26	1.91
20061373--20061467	49	1.9	49	86	0	136	13	24	13	48	1.79
20062421--20062450	15	2.1	15	93	6	53	20	3	13	63	1.43
20063661--20063766	20	5.1	20	72	16	81	51	12	2	33	1.54
20063631--20063771	57	2.3	62	82	12	170	48	14	3	32	1.61
20063633--20063813	57	3.1	60	78	15	159	50	13	4	30	1.61
20063923--20063971	24	2.0	24	100	0	98	51	12	8	28	1.68
20063980--20064022	23	1.9	23	85	4	61	51	6	6	34	1.56
20063971--20064165	55	3.5	55	92	0	309	54	9	4	30	1.53
20064020--20064083	23	3.0	22	78	14	73	57	7	3	31	1.43
20064023--20064106	20	4.5	19	68	23	61	57	9	2	30	1.44
20064089--20064122	14	2.2	16	90	10	54	61	8	0	29	1.26
20064120--20064197	32	2.4	32	87	4	104	56	14	5	24	1.58
20064206--20064333	24	5.3	24	73	15	111	55	9	3	31	1.50
20064152--20064319	72	2.3	72	79	6	180	55	9	3	30	1.49
20064318--20064368	16	3.1	16	76	13	50	54	13	5	25	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20066686--20066710	9	2.8	9	100	0	50	60	0	0	40	0.97
20076376--20076429	23	2.5	22	76	8	56	27	5	25	40	1.78
20076650--20076786	18	7.8	17	75	9	71	40	10	10	37	1.76
20076664--20076706	17	2.5	17	78	10	52	34	13	13	37	1.85
20076721--20076786	18	3.7	18	83	4	89	36	10	13	39	1.80
20076710--20076801	18	5.2	18	77	12	73	41	7	11	39	1.71
20077578--20077608	15	2.1	15	93	0	53	61	35	0	3	1.12
20078543--20078572	9	3.2	9	95	4	51	70	0	0	30	0.88
20089718--20089772	23	2.4	23	93	0	92	18	36	29	16	1.92
20092326--20092368	23	1.9	22	85	4	59	79	6	0	13	0.93
20108913--20109067	77	2.0	77	97	2	294	34	20	17	28	1.95
20118380--20118426	20	2.3	20	96	0	85	42	23	14	19	1.88
20137794--20137840	21	2.2	21	96	0	85	29	8	29	31	1.87
20143953--20143998	24	1.9	24	82	8	58	54	13	0	32	1.39
20144250--20144298	20	2.4	20	83	10	55	48	14	4	32	1.62
20144270--20144339	33	2.1	33	84	10	90	55	12	4	27	1.56
20144367--20144545	55	3.3	55	79	8	186	54	10	5	30	1.56
20144472--20144514	23	1.9	23	90	4	70	58	11	4	25	1.52
20144546--20144606	24	2.8	20	73	17	59	50	8	4	36	1.54
20144551--20144680	27	5.2	24	69	23	83	53	8	3	34	1.47
20144561--20144680	51	2.4	48	80	14	136	53	9	3	34	1.49
20144637--20144714	21	3.6	21	74	11	68	53	12	5	28	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20144705--20144755	17	3.0	17	77	8	59	50	11	7	29	1.67
20144705--20144782	32	2.5	31	79	10	79	50	12	8	28	1.71
20145375--20145413	12	3.2	12	92	7	62	71	7	0	20	1.10
20145374--20145426	12	4.4	12	83	6	54	71	7	0	20	1.10
20145689--20146022	43	7.9	43	83	8	371	38	19	13	27	1.90
20145706--20146022	85	3.7	85	82	7	367	39	19	13	27	1.89
20146795--20146841	24	1.9	24	82	4	58	12	21	6	59	1.55
20147460--20147512	25	2.2	24	89	3	79	1	18	0	79	0.83
20147492--20147516	12	2.1	12	100	0	50	8	8	0	84	0.79
20147459--20147511	24	2.2	23	83	9	70	1	20	0	77	0.87
20163107--20163209	45	2.3	45	79	0	107	28	22	28	21	1.99
20164012--20164190	94	1.9	94	81	2	216	26	17	26	29	1.97
20166480--20166520	21	2.0	21	90	0	64	24	29	34	12	1.91
20181672--20182258	292	2.0	292	94	0	1039	31	18	20	29	1.96
20185196--20185235	21	2.0	21	85	9	57	22	32	12	32	1.91
20204483--20204523	16	2.6	16	100	0	82	56	26	4	12	1.56
20211424--20211463	21	1.9	21	85	10	55	17	35	20	27	1.95
20217771--20217810	20	2.0	20	95	0	71	30	22	7	40	1.81
20217927--20217955	13	2.2	13	100	0	58	13	31	6	48	1.69
20225073--20225141	33	2.1	32	81	10	77	17	13	30	39	1.87
20254238--20254344	46	2.3	46	83	0	142	25	18	29	26	1.98
20254900--20254943	23	1.9	23	90	9	72	40	22	13	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20256492--20256535	21	2.1	21	86	0	61	22	6	13	56	1.61
20258903--20258928	3	8.7	3	100	0	52	65	0	0	34	0.93
20259566--20259593	6	4.7	6	100	0	56	14	0	0	85	0.59
20269538--20269589	22	2.4	22	83	3	70	80	1	11	5	0.96
20270036--20270085	7	7.1	7	76	15	50	84	14	2	0	0.72
20270046--20270087	17	2.4	17	88	11	59	83	14	2	0	0.75
20270041--20270085	23	1.9	24	95	4	83	84	13	2	0	0.72
20270692--20270998	105	2.9	103	82	2	389	33	15	13	37	1.87
20270979--20271021	22	2.0	22	95	0	77	30	30	13	25	1.94
20270758--20271190	232	1.9	232	83	4	561	34	16	14	35	1.89
20271849--20272262	141	2.9	140	79	6	386	32	13	13	40	1.83
20283293--20283372	39	2.1	39	100	0	160	23	17	36	22	1.95
20291998--20292037	6	6.7	6	88	0	53	80	0	5	15	0.88
20291998--20292041	18	2.5	17	85	10	61	79	0	6	13	0.92
20292045--20292096	3	17.3	3	91	0	86	63	0	3	32	1.12
20292477--20292878	65	6.2	64	72	6	229	47	8	20	22	1.78
20292543--20292786	130	1.9	130	80	3	285	47	9	20	23	1.78
20294274--20294318	22	2.0	22	100	0	90	31	17	4	46	1.68
20296867--20296918	21	2.5	21	93	3	88	28	7	15	48	1.73
20297378--20297415	15	2.5	15	91	0	58	60	10	23	5	1.50
20309299--20309400	37	2.7	37	78	6	107	35	10	14	39	1.81
20309654--20309716	31	2.0	31	84	6	83	76	3	3	17	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20309672--20309716	16	2.9	15	80	9	54	82	2	2	13	0.86
20328653--20329559	370	2.4	370	83	2	1169	29	22	27	20	1.98
20331346--20331396	25	2.0	25	100	0	102	37	11	11	39	1.79
20351480--20351583	45	2.3	45	78	3	111	17	39	16	26	1.90
20375276--20375501	61	3.7	62	72	9	205	34	18	17	29	1.94
20375336--20375558	59	3.7	62	75	5	204	33	15	18	32	1.92
20375276--20375502	59	3.8	59	76	7	224	34	18	17	29	1.94
20375211--20375568	120	3.0	119	83	6	436	35	15	17	31	1.91
20384560--20385342	201	3.9	201	77	5	731	33	12	11	41	1.80
20387806--20387832	7	3.9	7	100	0	54	14	11	0	74	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190