genome.fa.s223.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  83  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13368167--13368219	26	2.0	26	96	0	97	28	24	20	26	1.99
13370446--13370498	26	2.0	26	100	0	106	30	26	16	26	1.97
13370799--13371322	263	2.0	263	89	0	807	36	17	17	29	1.92
13372297--13372375	26	3.0	26	98	0	149	26	25	20	27	1.99
13372356--13375643	904	3.7	876	84	4	4123	26	24	24	25	2.00
13374105--13374157	26	2.0	26	88	0	79	30	24	16	28	1.97
13374581--13374639	26	2.2	27	84	3	84	59	6	10	23	1.54
13375011--13375061	26	2.0	26	100	0	102	27	23	19	29	1.98
13376550--13376602	26	2.0	26	100	0	106	26	26	20	26	1.99
13377452--13377504	26	2.0	26	96	0	97	24	28	20	26	1.99
13375720--13380450	904	5.3	903	87	3	6334	25	24	24	25	2.00
13378349--13378401	26	2.0	26	92	0	88	24	24	22	28	2.00
13379252--13379304	26	2.0	26	88	0	79	28	22	20	28	1.99
13381621--13381673	26	2.0	26	92	7	90	28	26	16	28	1.97
13382497--13382549	26	2.0	26	96	0	97	28	26	18	26	1.98
13385145--13385197	26	2.0	26	96	0	97	28	26	18	26	1.98
13386046--13386098	26	2.0	26	96	0	97	28	26	18	26	1.98
13387818--13387870	26	2.0	26	92	0	88	26	22	22	28	1.99
13383395--13388721	904	6.0	893	84	4	6663	25	24	24	25	2.00
13391014--13391067	26	2.1	26	96	0	99	20	24	22	33	1.97
13392720--13392772	26	2.0	26	92	0	88	26	22	20	30	1.98
13394369--13394421	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13395258--13395310	26	2.0	26	96	0	97	28	26	18	26	1.98
13393427--13399594	898	6.9	897	83	5	7088	26	24	23	26	2.00
13398818--13398869	27	2.0	26	92	3	86	28	26	17	26	1.97
13401425--13401477	26	2.0	26	92	0	88	28	18	24	28	1.98
13402315--13402367	26	2.0	26	92	0	88	26	16	26	30	1.97
13400111--13405001	893	5.5	890	80	8	4986	26	23	24	26	2.00
13404061--13404139	26	3.0	26	98	0	149	29	20	26	24	1.99
13405689--13405741	26	2.0	26	100	0	106	26	20	26	26	1.99
13406590--13406642	26	2.0	26	96	0	97	26	20	24	28	1.99
13407348--13407400	26	2.0	26	88	0	79	26	22	22	28	1.99
13408236--13408285	26	1.9	26	95	0	91	28	18	28	26	1.98
13409816--13409868	26	2.0	26	96	0	97	26	22	26	24	2.00
13410740--13410795	26	2.2	26	96	0	103	26	14	25	33	1.94
13408341--13413884	904	6.1	902	84	4	6818	25	23	24	26	2.00
13411635--13411685	26	2.0	26	92	0	84	29	21	23	25	1.99
13412560--13412615	26	2.2	26	96	0	103	26	14	25	33	1.94
13413454--13413505	25	2.0	26	92	3	88	28	21	23	26	1.99
13414244--13414296	26	2.0	26	88	0	79	24	20	28	26	1.99
13413092--13414680	791	2.0	793	88	3	2345	24	25	25	23	2.00
13415151--13415203	26	2.0	26	96	0	97	28	20	24	26	1.99
13416037--13416089	26	2.0	26	100	0	106	30	20	22	26	1.98
13413886--13426649	902	14.4	902	85	4	15837	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13419571--13419623	26	2.0	26	88	0	79	26	22	22	28	1.99
13420471--13420523	26	2.0	26	88	0	79	28	18	22	30	1.98
13423122--13423174	26	2.0	26	96	0	97	32	20	20	26	1.98
13424879--13424931	26	2.0	26	92	0	88	28	22	22	26	1.99
13425775--13425827	26	2.0	26	92	0	88	28	18	24	28	1.98
13423994--13426649	896	3.0	894	89	2	4003	26	23	24	25	2.00
13427452--13427504	26	2.0	26	96	0	97	26	18	26	28	1.98
13428356--13428408	26	2.0	26	88	0	79	26	16	24	32	1.97
13426801--13436538	905	10.9	901	83	6	11340	25	23	24	25	2.00
13430137--13430189	26	2.0	26	92	0	88	28	18	24	28	1.98
13433728--13433778	26	2.0	26	92	0	84	31	19	23	25	1.98
13434619--13434671	26	2.0	26	89	7	81	30	20	22	26	1.98
13435524--13435573	26	1.9	26	95	0	91	28	18	26	28	1.98
13436416--13436468	26	2.0	26	92	0	88	26	20	28	24	1.99
13436535--13441061	863	5.1	872	82	9	4391	25	24	25	24	2.00
13439368--13439417	24	2.1	24	100	0	100	28	40	14	18	1.89
13440311--13440382	24	3.0	24	91	0	126	23	40	18	18	1.91
13440533--13440585	26	2.0	26	92	0	88	28	18	24	28	1.98
13442417--13442466	26	1.9	26	91	0	82	26	26	18	30	1.98
13441907--13443586	839	2.0	835	85	4	2263	25	25	23	25	2.00
13444854--13444905	26	2.0	26	88	0	77	26	19	25	28	1.98
13445736--13445788	26	2.0	26	92	0	88	30	16	22	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13446636--13446688	26	2.0	26	96	0	97	28	20	24	26	1.99
13447502--13447554	26	2.0	26	92	0	88	28	22	22	26	1.99
13448407--13448459	26	2.0	26	92	0	88	28	18	24	28	1.98
13450187--13450239	26	2.0	26	96	0	97	24	20	28	26	1.99
13444508--13452837	905	9.3	901	85	4	10450	25	24	24	25	2.00
13451985--13452037	26	2.0	26	85	7	72	28	15	24	32	1.95
13452912--13452964	26	2.0	26	92	0	88	30	22	20	26	1.98
13455602--13455654	26	2.0	26	100	0	106	26	26	20	26	1.99
13452843--13458051	894	5.8	896	87	3	6922	25	24	24	25	2.00
13458680--13458731	25	2.0	25	92	3	86	28	25	19	26	1.98
13458050--13466735	902	9.9	902	84	5	10215	25	24	24	25	2.00
13460486--13460538	26	2.0	26	85	7	72	32	22	16	28	1.96
13461384--13461433	26	1.9	26	100	0	100	26	26	20	28	1.99
13462277--13462329	26	2.0	26	96	0	97	24	26	22	26	2.00
13462951--13466609	863	4.2	864	84	4	4481	25	25	24	25	2.00
13466583--13466634	26	2.0	25	88	3	77	28	28	15	26	1.96
13466742--13468884	897	2.4	901	87	3	3006	25	24	25	24	2.00
13468858--13468962	26	4.0	26	93	0	183	26	19	25	28	1.98
13468673--13469114	237	1.9	237	82	0	562	24	25	26	23	2.00
13469807--13469859	26	2.0	26	92	0	88	32	18	20	28	1.97
13471601--13471653	26	2.0	26	96	0	97	26	22	24	26	2.00
13468910--13475444	903	7.3	900	88	2	9056	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13472504--13472556	26	2.0	26	89	7	81	28	20	22	28	1.99
13473405--13473457	26	2.0	26	100	0	106	26	20	26	26	1.99
13474300--13474351	26	2.0	25	85	3	68	28	17	23	30	1.97
13476830--13476880	26	2.0	26	88	0	75	31	17	23	27	1.97
13476993--13479179	717	3.1	717	94	1	3685	25	22	24	27	2.00
13481814--13481864	26	2.0	26	96	0	93	27	17	25	29	1.98
13480056--13484399	882	4.9	881	85	4	5638	25	23	24	25	2.00
13483824--13484968	581	2.0	580	91	0	1862	25	20	23	29	1.99
13485051--13485103	26	2.0	26	89	7	81	28	18	22	30	1.98
13485943--13485995	26	2.0	26	100	0	106	26	16	26	30	1.97
13484396--13487532	896	3.5	891	88	3	4387	25	22	25	26	2.00
13489135--13489187	26	2.0	26	92	0	88	28	18	24	28	1.98
13489449--13489501	26	2.0	26	96	0	97	26	20	24	28	1.99
13490318--13490371	26	2.0	27	92	3	92	25	18	27	27	1.98
13489467--13492272	871	3.2	879	83	7	3104	24	23	25	25	2.00
13492589--13492641	26	2.0	26	85	0	70	28	18	22	30	1.98
13494352--13494404	26	2.0	26	96	0	97	26	18	26	28	1.98
13493488--13500099	895	7.5	894	86	4	8671	25	24	24	25	2.00
13496124--13496174	26	2.0	26	96	0	93	29	15	25	29	1.96
13497028--13497077	26	1.9	26	95	0	91	30	22	26	22	1.99
13499646--13499698	26	2.0	26	92	0	88	26	20	24	28	1.99
13500760--13500809	26	1.9	26	95	0	91	32	18	24	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13501651--13501700	26	2.0	24	92	7	82	32	12	26	30	1.92
13501658--13501710	26	2.0	26	88	0	79	30	15	24	30	1.95
13502556--13502608	26	2.0	26	92	0	88	28	20	22	28	1.99
13503461--13503513	26	2.0	26	92	0	88	28	18	24	28	1.98
13504367--13504419	26	2.0	26	92	0	88	26	20	26	26	1.99
13500110--13505295	906	5.8	901	86	3	6797	25	23	24	25	2.00
13505561--13505588	14	2.0	14	100	0	56	28	0	42	28	1.56
13505996--13506048	26	2.0	26	100	0	106	26	20	26	26	1.99
13507608--13507657	26	1.9	26	91	0	82	30	24	26	20	1.98
13506945--13509527	877	2.9	874	86	3	3464	25	24	25	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190