genome.fa.s223.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  108  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16873084--16873136	26	2.0	26	88	0	79	24	20	28	26	1.99
16871308--16873461	879	2.4	877	84	6	2813	25	24	25	24	2.00
16873637--16873689	26	2.0	26	96	0	97	26	18	26	28	1.98
16874498--16874576	26	3.0	26	87	7	124	31	20	21	26	1.98
16874876--16874928	26	2.0	26	96	0	97	32	20	20	26	1.98
16874535--16875193	352	1.9	352	97	0	1246	23	25	31	20	1.98
16875778--16875829	26	2.0	26	92	0	86	26	15	26	30	1.96
16875804--16876169	156	2.3	157	81	4	398	22	28	27	21	1.99
16877708--16877759	26	2.0	26	92	0	86	26	15	26	30	1.96
16878239--16878291	26	2.0	26	92	0	88	26	20	24	28	1.99
16878265--16878485	112	2.0	112	87	1	318	22	23	34	19	1.96
16879259--16879309	26	2.0	26	92	0	84	27	15	27	29	1.96
16881363--16881414	26	2.0	26	92	0	86	30	17	21	30	1.96
16882267--16882319	26	2.0	26	89	7	81	28	16	26	28	1.97
16879740--16885357	903	6.3	899	85	4	7204	25	23	24	25	2.00
16884897--16884949	26	2.0	26	92	0	88	28	20	20	30	1.98
16885372--16888064	870	3.1	866	86	3	3892	25	25	24	25	2.00
16888396--16889037	322	2.0	322	89	0	989	24	20	23	31	1.98
16889416--16889468	26	2.0	26	92	0	88	30	20	24	24	1.99
16890319--16890371	26	2.0	26	96	0	97	26	18	26	28	1.98
16888765--16892007	898	3.6	894	86	3	4374	25	23	24	26	2.00
16892091--16892143	26	2.0	26	96	0	97	30	24	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16894702--16894747	24	1.9	24	86	8	67	30	23	17	28	1.97
16895595--16895647	26	2.0	26	88	0	79	30	22	18	28	1.98
16899372--16899422	26	2.0	26	96	0	93	31	25	15	27	1.96
16897347--16900351	890	3.4	899	86	2	4113	24	25	24	25	2.00
16899989--16900719	368	2.0	364	84	6	967	21	28	24	24	1.99
16901496--16901547	26	2.0	26	92	0	86	26	26	21	25	1.99
16901521--16906889	877	6.1	875	83	7	6193	25	24	23	25	2.00
16903268--16903329	26	2.5	24	87	12	90	25	22	25	25	2.00
16902395--16906854	882	5.0	898	85	3	5785	25	24	23	25	2.00
16904164--16904216	26	2.0	26	96	0	97	28	24	20	26	1.99
16905069--16905120	26	2.0	26	96	0	95	28	26	17	26	1.97
16914111--16914160	26	1.9	26	88	8	75	24	32	18	26	1.97
16915008--16915060	26	2.0	26	92	0	88	28	24	18	28	1.98
16913007--16917985	897	5.6	886	82	6	5354	25	24	24	25	2.00
16918694--16918746	26	2.0	26	88	0	79	26	26	20	26	1.99
16919573--16919625	26	2.0	26	88	0	79	28	16	24	30	1.97
16917984--16920926	898	3.3	880	85	4	3773	25	23	24	26	2.00
16920484--16920537	28	2.0	27	89	10	83	29	20	24	25	1.99
16921281--16921330	25	2.0	26	92	4	84	30	20	24	26	1.98
16920947--16922751	716	2.5	717	87	4	2512	26	24	23	26	2.00
16922725--16922777	26	2.0	26	92	0	88	28	18	24	28	1.98
16925160--16925212	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16927934--16927983	26	1.9	26	95	0	91	28	16	28	28	1.97
16928811--16928861	26	2.0	26	88	0	75	29	15	27	27	1.96
16929694--16929746	26	2.0	26	92	0	88	30	20	22	26	1.98
16927606--16933477	885	6.6	885	80	6	6419	25	24	25	24	2.00
16930577--16930629	26	2.0	26	96	0	97	28	20	24	26	1.99
16930603--16930979	159	2.4	159	87	0	529	22	29	29	18	1.97
16931481--16931531	26	2.0	26	96	0	93	27	19	27	25	1.99
16932366--16932416	26	2.0	26	88	0	75	27	19	27	25	1.99
16933255--16933307	26	2.0	26	96	0	97	28	20	24	26	1.99
16933281--16933636	159	2.2	159	84	1	444	23	27	28	20	1.99
16934317--16934367	26	2.0	26	92	0	84	31	19	23	25	1.98
16935172--16935224	26	2.0	26	92	0	88	28	18	24	28	1.98
16936763--16936815	26	2.0	26	92	0	88	28	18	24	28	1.98
16939207--16939256	26	1.9	26	87	0	73	26	18	30	26	1.98
16940105--16940157	26	2.0	26	92	0	88	28	22	24	24	2.00
16937891--16941031	899	3.5	895	85	4	4108	25	24	24	25	2.00
16943060--16943112	26	2.0	26	88	0	79	30	18	22	28	1.98
16941284--16945430	903	4.6	902	90	2	6155	24	24	25	25	2.00
16943962--16944014	26	2.0	26	88	0	79	30	18	22	28	1.98
16944857--16944909	26	2.0	26	100	0	106	26	20	26	26	1.99
16945577--16945629	26	2.0	26	96	0	97	28	20	24	26	1.99
16946479--16946531	26	2.0	26	92	0	88	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16945429--16948258	898	3.2	896	88	1	3992	24	24	25	25	2.00
16948278--16948330	26	2.0	26	100	0	106	26	26	20	26	1.99
16949182--16949234	26	2.0	26	100	0	106	26	26	20	26	1.99
16950059--16950111	26	2.0	26	92	0	88	28	24	20	26	1.99
16951642--16951666	4	6.2	4	100	0	50	0	72	28	0	0.86
16951852--16951903	26	2.0	25	85	3	68	25	23	21	30	1.99
16953608--16953658	26	2.0	26	92	0	84	23	27	17	31	1.97
16954507--16954559	26	2.0	26	96	0	97	28	26	20	24	1.99
16952777--16965239	900	14.0	898	86	3	16576	25	24	24	25	2.00
16957197--16957249	26	2.0	26	96	0	97	28	26	18	26	1.98
16960761--16960812	26	2.0	26	100	0	104	26	26	19	26	1.99
16961657--16961709	26	2.0	26	88	0	79	28	26	16	28	1.97
16963426--16963478	26	2.0	26	92	0	88	24	20	26	28	1.99
16962545--16965239	903	3.0	897	85	3	3620	25	24	23	25	2.00
16966716--16972793	865	6.9	869	82	6	6178	26	24	23	25	2.00
16969156--16969206	26	2.0	26	100	0	102	31	25	15	27	1.96
16970953--16971003	26	2.0	26	92	0	84	29	27	15	27	1.96
16971846--16971898	26	2.0	26	96	0	97	28	24	20	26	1.99
16972561--16972923	153	2.3	153	82	4	424	21	27	28	22	1.99
16972897--16972949	26	2.0	26	100	0	106	26	26	20	26	1.99
16973796--16973846	26	2.0	26	92	0	84	21	25	19	33	1.97
16972733--16975619	900	3.2	898	88	1	4148	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16974696--16974748	26	2.0	26	92	0	88	26	24	18	30	1.98
16975425--16975777	158	2.2	158	85	2	467	21	27	28	22	1.99
16975752--16975803	25	2.0	26	88	3	79	28	23	19	28	1.98
16978679--16978731	26	2.0	26	96	0	97	26	18	26	28	1.98
16980430--16980482	26	2.0	26	100	0	106	26	20	26	26	1.99
16979087--16981531	898	2.7	890	86	3	3304	26	24	24	24	2.00
16981329--16981381	26	2.0	26	96	0	97	28	20	24	26	1.99
16982876--16982928	26	2.0	26	96	0	97	26	24	20	28	1.99
16983754--16983805	26	2.0	25	88	3	77	26	25	19	28	1.98
16987119--16987171	26	2.0	26	92	0	88	28	24	18	28	1.98
16987950--16988002	26	2.0	26	100	0	106	26	26	20	26	1.99
16987060--16999129	904	13.6	903	84	5	14669	25	24	23	25	2.00
16989750--16989803	26	2.1	26	89	0	81	24	24	20	31	1.98
16990654--16990705	26	2.0	26	96	0	95	28	25	19	26	1.98
16993338--16993390	26	2.0	26	100	0	106	26	26	20	26	1.99
16996861--16996911	26	2.0	26	84	0	66	27	25	17	29	1.98
16994237--16999129	903	5.5	900	83	6	5897	26	24	23	25	2.00
17000266--17000316	26	2.0	26	100	0	102	27	23	21	27	1.99
17001157--17001209	26	2.0	26	96	0	97	28	26	18	26	1.98
16999190--17004501	893	5.9	891	87	3	7197	25	24	24	25	2.00
17002062--17002112	26	2.0	26	100	0	102	27	25	19	27	1.99
17003845--17003897	26	2.0	26	88	0	79	28	22	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17004680--17004732	26	2.0	26	92	0	88	26	24	22	26	2.00
17005579--17005631	26	2.0	26	96	0	97	26	24	20	28	1.99
17006476--17006528	26	2.0	26	96	0	97	26	24	20	28	1.99
17004495--17011326	897	7.6	896	85	3	8706	25	24	24	25	2.00
17007377--17007428	26	2.0	26	88	0	77	23	26	23	26	2.00
17008272--17008324	26	2.0	26	88	0	79	30	22	18	28	1.98
17009161--17009213	26	2.0	26	92	0	88	30	28	15	26	1.96
17010057--17010107	26	2.0	26	92	0	84	31	25	15	27	1.96
17010950--17011000	26	2.0	26	96	0	93	27	27	17	27	1.98
17012289--17012364	26	2.9	26	92	0	125	26	26	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190