genome.fa.s223.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  144  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23420014--23420053	17	2.2	18	86	8	55	67	0	2	30	1.04
23425080--23425171	42	2.2	42	96	0	166	36	27	8	27	1.86
23429086--23429130	22	1.9	24	86	13	67	62	0	17	20	1.33
23429348--23429388	13	3.2	13	89	0	55	75	0	2	21	0.92
23429471--23429509	16	2.4	16	80	16	53	66	0	5	28	1.12
23429781--23429852	14	5.3	14	75	12	60	56	15	8	19	1.63
23429769--23429852	27	3.1	27	73	14	82	55	15	9	19	1.66
23429925--23429997	38	1.9	38	85	0	101	49	23	8	19	1.75
23430185--23430221	6	5.8	6	93	6	56	83	0	0	16	0.64
23430166--23430221	26	2.2	26	87	6	78	78	0	0	21	0.75
23430185--23430219	7	5.3	7	90	10	56	85	0	0	14	0.59
23430185--23430221	13	2.8	14	88	12	60	83	0	0	16	0.64
23433220--23434288	323	3.3	326	78	6	852	43	13	9	33	1.78
23433203--23434276	161	6.6	162	73	9	636	43	13	9	33	1.78
23433972--23434320	161	2.2	156	79	6	364	42	14	9	33	1.78
23442244--23442297	12	4.8	12	80	13	62	22	0	38	38	1.54
23442290--23442415	19	6.6	19	76	10	107	18	3	34	42	1.69
23446206--23446247	22	1.9	22	90	0	66	40	4	4	50	1.45
23446206--23446253	22	2.1	22	84	3	60	41	6	4	47	1.48
23453791--23453823	5	7.0	5	96	3	52	42	15	0	42	1.46
23454462--23454494	15	2.1	17	88	11	52	54	0	0	45	0.99
23454858--23454897	6	6.8	6	85	5	55	30	5	0	65	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23456557--23456630	36	2.1	36	100	0	148	39	8	21	31	1.83
23463698--23463739	20	2.0	20	82	17	50	19	2	40	38	1.64
23463739--23463809	7	10.7	6	75	15	52	18	1	32	47	1.57
23463702--23463809	27	4.0	26	76	10	92	18	1	36	43	1.61
23463705--23463809	13	7.8	13	75	16	88	18	1	35	44	1.60
23463827--23464064	49	4.8	49	77	9	234	44	9	15	30	1.78
23463829--23464082	99	2.6	98	83	6	289	45	9	13	31	1.76
23468529--23468571	21	2.1	20	91	4	68	48	4	23	23	1.69
23471744--23471807	28	2.3	28	87	12	89	32	3	6	57	1.39
23471953--23472000	13	3.7	13	76	20	55	81	0	2	16	0.79
23471941--23472000	26	2.4	24	86	5	75	78	1	3	16	0.97
23471953--23472005	9	5.9	9	82	6	63	83	0	1	15	0.74
23472919--23472960	13	3.3	13	83	6	50	52	7	0	40	1.29
23473158--23473210	25	2.1	25	85	0	70	45	20	16	16	1.86
23473183--23473284	37	2.8	36	76	4	105	45	13	20	20	1.85
23473183--23473321	37	3.8	35	75	7	91	46	13	19	20	1.84
23473183--23473322	74	1.9	73	79	7	158	45	13	19	21	1.84
23474526--23474584	19	3.0	20	85	7	75	0	10	3	86	0.68
23474536--23474584	12	4.1	12	89	5	73	0	6	4	89	0.57
23474527--23474583	9	6.7	9	80	8	57	0	8	3	87	0.64
23474536--23474584	1	49.0	1	81	0	53	0	6	4	89	0.57
23474876--23474906	16	1.9	16	93	0	53	9	19	0	70	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23479220--23479348	60	2.2	59	83	4	152	34	12	6	47	1.66
23479258--23479467	74	2.8	75	90	7	315	32	10	6	50	1.63
23479420--23479596	63	2.9	58	80	14	207	33	10	5	49	1.61
23479686--23479727	15	2.7	15	92	3	66	78	0	0	21	0.75
23479693--23479727	18	1.9	18	88	11	54	80	0	0	20	0.72
23480629--23480653	13	1.9	13	100	0	50	0	4	8	88	0.64
23480668--23481143	44	11.0	44	80	4	504	46	17	12	24	1.82
23480667--23481143	133	3.7	132	85	4	564	45	17	12	24	1.82
23482152--23482205	8	6.0	9	77	16	58	7	9	0	83	0.82
23482150--23482203	28	2.0	27	92	3	90	5	7	0	87	0.68
23489170--23489341	86	2.0	86	97	0	326	19	22	12	45	1.84
23492700--23492736	9	4.1	9	96	0	56	89	0	5	5	0.60
23492897--23493130	74	3.1	75	83	7	282	32	11	4	52	1.56
23493033--23493248	59	3.6	58	81	8	247	35	12	3	49	1.56
23493035--23493248	60	3.6	59	81	6	245	35	11	3	49	1.56
23493318--23493357	13	2.9	14	85	14	57	75	0	0	25	0.81
23494556--23494661	28	3.8	28	97	0	203	35	6	6	50	1.54
23495255--23495293	19	2.1	19	85	9	53	46	25	2	25	1.66
23495755--23495795	21	1.9	22	85	14	59	53	2	7	36	1.42
23499623--23499669	20	2.4	18	86	13	67	2	14	2	80	0.89
23502676--23502832	7	23.9	7	70	13	66	16	1	38	43	1.56
23502705--23502781	27	2.9	26	80	5	73	16	0	41	41	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23502733--23502817	27	3.2	27	79	14	72	16	1	41	41	1.56
23515857--23516290	157	2.7	156	81	6	464	28	7	19	44	1.78
23515856--23516344	157	3.1	157	77	6	459	29	7	19	43	1.78
23517284--23517338	11	5.0	11	82	8	67	40	9	14	36	1.78
23517279--23517338	22	2.7	23	76	19	74	41	8	13	36	1.74
23517272--23517337	33	2.0	33	90	0	105	42	9	10	37	1.71
23518773--23518894	60	2.0	60	100	0	244	38	14	19	27	1.91
23519487--23519561	31	2.3	32	79	11	89	38	8	4	49	1.51
23522188--23522515	109	3.0	109	98	0	629	50	13	30	5	1.65
23522816--23522842	14	1.9	14	100	0	54	92	0	7	0	0.38
23522820--23522844	12	2.1	12	100	0	50	92	0	8	0	0.40
23534975--23535024	16	3.2	16	83	10	68	6	14	0	80	0.90
23536464--23536521	4	14.5	4	88	0	89	29	1	22	46	1.62
23537027--23537097	32	2.3	32	85	9	94	71	1	0	26	0.94
23537027--23537073	21	2.1	22	88	7	69	70	2	0	27	0.99
23537018--23537098	32	2.5	31	80	13	78	72	2	0	24	0.96
23540644--23540739	17	5.5	17	76	11	79	33	16	5	44	1.70
23542189--23542239	23	2.3	21	81	18	59	76	5	1	15	1.07
23542500--23542896	43	9.3	43	71	13	207	37	19	11	30	1.88
23542713--23542903	41	4.6	41	74	11	138	36	18	13	32	1.89
23543997--23544055	18	3.2	18	77	20	68	5	13	0	81	0.85
23543997--23544056	11	5.1	11	75	18	50	5	13	0	81	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23543997--23544056	26	2.3	25	80	11	66	5	13	0	81	0.84
23548338--23548380	21	2.0	22	90	4	70	51	13	4	30	1.62
23548422--23548461	20	2.0	20	85	9	55	62	12	2	22	1.42
23548456--23548523	26	2.5	26	88	7	91	51	16	8	23	1.72
23548427--23548512	12	7.4	11	71	24	61	54	16	6	22	1.65
23548560--23548598	20	2.0	20	89	0	60	56	12	2	28	1.50
23548779--23548854	20	3.7	19	78	15	73	73	6	2	17	1.16
23548785--23548853	6	13.4	5	75	18	54	75	4	2	17	1.09
23548785--23548860	34	2.2	35	86	4	102	75	3	3	17	1.12
23550166--23550223	19	2.9	20	82	7	64	8	1	31	58	1.38
23550205--23550252	14	3.9	12	82	15	62	14	2	25	58	1.48
23550205--23550260	24	2.2	25	87	6	78	16	1	25	57	1.49
23550213--23550261	13	3.8	13	84	13	57	16	4	22	57	1.56
23552565--23552607	18	2.4	18	96	0	77	18	0	6	74	1.04
23552982--23553028	20	2.4	19	82	6	58	6	6	6	80	1.01
23554467--23554495	7	4.3	7	95	4	51	0	0	13	86	0.58
23554467--23554509	20	2.2	20	86	0	59	6	0	9	83	0.80
23561129--23561174	3	15.3	3	100	0	92	34	0	0	65	0.93
23561173--23561309	3	45.7	3	91	0	193	35	29	0	33	1.63
23563618--23563681	20	3.0	20	70	17	58	67	10	0	21	1.21
23563621--23563681	21	2.9	21	73	11	70	67	9	0	22	1.20
23565944--23566003	20	3.0	21	76	9	72	20	5	26	48	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23566034--23566075	21	2.0	21	95	0	75	26	4	23	45	1.73
23566040--23566087	21	2.3	21	88	0	69	29	6	22	41	1.78
23566435--23566475	19	2.2	19	90	0	64	12	2	2	82	0.86
23570648--23570726	28	2.8	26	74	25	65	78	6	12	2	1.04
23570676--23570732	17	3.0	19	80	10	55	80	5	14	0	0.87
23570650--23570726	29	2.6	29	83	10	93	77	6	12	2	1.06
23573390--23573449	20	3.0	20	79	11	79	15	5	31	48	1.66
23574869--23574913	24	1.9	23	86	13	65	24	4	0	71	1.05
23576813--23576856	21	2.2	20	83	4	52	13	13	0	72	1.12
23577878--23577918	20	2.0	20	90	0	64	43	41	4	9	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190