genome.fa.s223.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  117  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18352175--18352503	127	2.6	125	80	4	331	34	16	17	31	1.92
18352403--18352707	103	2.9	103	84	4	382	37	15	15	32	1.89
18352688--18352729	22	1.9	22	85	9	59	35	19	21	23	1.96
18352381--18352722	104	3.3	103	82	4	359	36	16	15	31	1.90
18352583--18352965	126	3.1	125	83	8	478	35	17	16	30	1.92
18352717--18353154	118	3.8	114	78	12	407	37	16	15	31	1.89
18352248--18353154	348	2.7	332	84	5	1041	36	16	15	31	1.91
18352871--18353076	104	2.0	104	81	5	247	38	14	14	32	1.86
18353080--18353244	82	2.0	84	85	2	226	39	17	11	31	1.85
18353891--18353920	15	2.0	15	93	0	51	36	13	30	20	1.90
18353862--18354045	45	4.4	42	82	12	166	32	11	20	35	1.89
18353885--18354045	45	3.8	44	85	7	197	31	11	20	37	1.88
18353962--18354054	36	2.4	38	80	8	100	29	10	18	41	1.84
18354122--18354447	34	9.9	34	67	12	151	29	16	19	34	1.94
18354130--18354446	65	4.8	65	82	3	377	29	16	19	34	1.94
18355289--18355384	10	9.3	10	70	17	54	5	14	1	79	0.96
18355285--18355389	16	6.5	15	70	16	59	4	15	0	79	0.95
18356787--18356820	14	2.5	14	90	4	52	5	0	8	85	0.75
18358464--18358533	30	2.3	30	85	0	95	30	14	25	30	1.95
18358803--18358856	12	4.6	12	80	11	58	5	3	12	77	1.07
18362230--18362278	25	2.0	25	91	0	80	10	28	6	55	1.57
18362400--18362466	25	2.7	25	84	6	84	10	32	2	53	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18362203--18362564	174	2.1	172	88	6	536	6	25	7	60	1.48
18375999--18376040	18	2.4	17	84	7	57	80	2	11	4	0.95
18376857--18376919	32	1.9	33	87	3	92	33	4	7	53	1.51
18376846--18376914	16	3.8	20	66	28	55	33	7	8	50	1.61
18376896--18376979	20	4.3	20	75	14	77	34	7	8	50	1.60
18376989--18377226	41	5.7	41	79	7	237	32	7	10	49	1.66
18377028--18377184	20	7.5	22	77	17	120	35	5	10	48	1.62
18377055--18377225	20	8.4	19	78	11	144	32	6	11	49	1.64
18377045--18377214	62	2.8	60	79	8	180	33	5	10	50	1.61
18377232--18377297	32	2.1	32	88	5	98	25	1	13	59	1.44
18378505--18378566	13	4.8	13	70	21	51	24	14	6	54	1.63
18384860--18384978	16	6.6	17	75	15	71	31	7	10	51	1.63
18384860--18385280	20	22.5	19	67	22	73	30	6	11	50	1.65
18384874--18384958	32	2.4	34	81	15	102	30	5	9	54	1.56
18385023--18385088	18	3.3	21	75	10	59	28	6	15	50	1.67
18385006--18385281	41	6.6	41	79	10	299	30	6	12	49	1.67
18385044--18385099	18	3.0	18	75	10	67	35	5	12	46	1.65
18385290--18385351	32	1.9	32	90	0	97	30	1	11	56	1.44
18385334--18385382	19	2.5	19	86	6	62	28	6	10	55	1.57
18389654--18389782	66	1.9	67	85	6	172	26	12	4	56	1.55
18389755--18390513	402	1.9	406	79	8	859	29	7	7	55	1.54
18415843--18415891	2	24.5	2	100	0	98	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18415916--18415949	2	17.0	2	100	0	68	50	0	0	50	1.00
18415949--18415975	2	13.5	2	100	0	54	51	0	48	0	1.00
18416173--18416446	138	2.0	138	92	0	458	35	12	13	39	1.82
18419791--18419894	31	3.3	31	70	17	106	57	6	5	29	1.48
18419769--18419895	63	2.0	63	95	0	227	57	7	5	29	1.50
18421434--18421475	16	2.6	16	100	0	84	50	0	50	0	1.00
18422269--18422321	27	1.9	27	85	11	72	50	9	1	37	1.46
18427367--18427412	11	4.0	11	82	17	58	43	8	10	36	1.71
18427360--18427796	25	18.6	24	75	14	403	42	11	12	33	1.78
18427336--18427754	71	5.9	71	82	8	498	41	11	12	34	1.79
18427663--18427707	14	3.4	14	73	17	51	42	15	11	31	1.82
18427336--18427732	210	1.9	208	84	5	530	41	11	12	34	1.79
18427387--18427802	46	8.9	46	83	6	491	42	11	12	33	1.79
18427334--18427844	25	22.1	22	73	17	298	41	11	12	34	1.79
18427869--18427952	43	2.0	43	83	6	109	41	11	11	34	1.79
18428014--18428071	22	2.5	22	75	5	53	34	13	15	36	1.87
18428260--18428351	40	2.3	40	88	3	132	21	10	21	45	1.82
18428628--18428652	4	6.2	4	100	0	50	24	0	0	76	0.80
18431949--18432006	21	2.7	22	89	10	93	50	0	0	50	1.00
18431992--18432032	8	5.2	8	85	2	57	56	0	0	43	0.99
18431974--18432032	16	3.8	16	77	6	59	52	0	0	47	1.00
18439453--18439494	20	2.1	20	90	0	66	47	11	7	33	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18439592--18439637	25	1.9	25	86	8	69	54	8	6	30	1.56
18440905--18440986	13	6.6	13	83	10	109	69	7	0	23	1.13
18440905--18440992	6	14.3	6	80	8	61	68	6	0	25	1.14
18442514--18442571	5	11.4	5	83	9	73	18	3	1	75	1.03
18442996--18443044	22	2.3	21	79	10	55	61	2	6	30	1.32
18455184--18455233	20	2.5	19	81	15	57	68	6	8	18	1.36
18455979--18456137	48	3.3	47	74	11	151	26	15	3	54	1.57
18455984--18456163	97	1.9	97	84	2	245	26	15	6	52	1.66
18465487--18465583	34	2.8	34	73	17	92	73	4	14	8	1.22
18468393--18468427	17	2.0	18	88	5	54	74	8	5	11	1.22
18470630--18470882	97	2.6	97	85	4	336	36	10	11	41	1.75
18471015--18471066	9	5.6	9	80	8	59	69	1	1	26	1.10
18472027--18472064	20	1.9	20	94	0	67	71	10	5	13	1.30
18476355--18476402	21	2.3	21	78	7	53	33	14	22	29	1.94
18476957--18477190	124	1.9	124	93	0	405	31	11	23	33	1.90
18480395--18480428	17	2.0	17	94	0	59	35	32	5	26	1.81
18484697--18484737	8	5.1	8	96	0	73	46	24	17	12	1.82
18493818--18493862	14	3.0	16	78	15	51	46	0	51	2	1.13
18494200--18494225	6	4.3	6	100	0	52	30	0	0	69	0.89
18494350--18494477	59	2.2	59	88	4	197	46	5	9	39	1.59
18498111--18498170	13	4.6	13	78	15	54	76	3	18	1	1.00
18498110--18498164	19	3.0	19	79	10	53	74	5	18	1	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18498124--18498169	24	2.0	23	82	4	56	80	4	15	0	0.86
18498542--18498598	17	3.1	17	79	18	69	73	0	22	3	0.98
18498524--18498617	45	2.1	46	86	9	131	69	0	22	8	1.15
18498533--18498616	26	3.2	25	73	18	64	72	0	21	5	1.05
18498581--18498648	19	3.6	18	78	11	66	77	0	16	5	0.95
18498577--18498648	38	1.9	35	83	10	90	79	0	15	5	0.91
18498532--18498646	45	2.6	45	78	17	123	74	0	19	6	1.02
18499749--18499890	46	3.2	46	88	4	166	39	11	14	34	1.82
18499749--18499790	13	3.3	13	77	16	52	40	11	11	35	1.79
18499749--18499890	21	6.4	21	75	13	115	39	11	14	34	1.82
18499926--18499978	21	2.6	20	82	5	61	41	11	11	35	1.77
18499942--18499981	21	1.9	21	94	0	71	40	10	12	37	1.77
18500433--18500569	44	3.1	43	87	4	193	22	12	18	45	1.83
18500433--18500569	45	3.1	44	88	4	197	22	12	18	45	1.83
18500818--18500859	17	2.5	17	88	0	57	19	0	4	76	0.96
18501221--18501251	11	2.7	12	90	10	55	35	0	16	48	1.46
18501832--18501858	4	6.8	4	100	0	54	22	0	0	77	0.76
18501892--18502200	137	2.3	128	81	11	333	45	6	10	37	1.64
18502065--18502105	16	2.6	16	85	11	50	51	7	0	41	1.30
18506129--18506173	21	2.1	21	84	8	56	2	22	0	75	0.91
18506163--18506268	46	2.3	46	81	4	124	42	8	3	45	1.52
18506680--18506721	19	2.2	20	91	4	68	11	0	38	50	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18506667--18506758	6	14.3	6	72	17	53	17	1	35	45	1.56
18506713--18506789	33	2.3	33	84	8	95	18	3	32	45	1.67
18506778--18506840	14	4.6	14	84	2	74	14	0	36	49	1.44
18506753--18506840	21	4.3	21	73	2	81	15	2	34	47	1.58
18506778--18506850	14	5.4	13	81	4	65	15	1	32	50	1.52
18506688--18506831	7	21.4	7	72	7	93	15	2	34	47	1.57
18511105--18511147	13	3.5	13	81	12	63	41	2	9	46	1.48
18511105--18511152	24	2.0	24	100	0	96	41	4	8	45	1.53
18512241--18512385	18	8.1	18	77	15	140	55	0	0	43	1.09
18512241--18512368	67	1.9	67	85	6	179	57	0	0	41	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190