genome.fa.s223.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  130  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20898766--20898850	19	4.3	19	75	12	73	17	12	28	41	1.87
20901567--20901610	3	14.7	3	90	9	72	29	0	0	70	0.88
20907456--20907495	16	2.5	16	75	0	53	52	2	0	45	1.14
20907560--20907615	16	3.4	16	75	5	58	55	12	0	32	1.37
20907562--20907631	32	2.2	33	84	7	90	55	10	0	34	1.33
20911557--20911585	1	29.0	1	100	0	58	100	0	0	0	0.00
20911598--20911649	26	2.0	26	92	7	88	59	3	11	25	1.49
20914451--20914574	39	3.1	42	75	15	136	29	16	23	30	1.97
20914464--20914591	39	3.3	40	81	4	136	29	19	22	28	1.98
20915743--20916087	180	1.9	180	88	0	519	36	17	9	36	1.83
20921515--20921571	29	1.9	30	82	7	71	28	7	5	59	1.45
20924439--20924693	49	5.2	48	77	7	176	43	13	11	31	1.79
20924569--20924941	48	7.6	48	81	8	362	45	12	13	28	1.79
20924569--20924933	98	3.7	98	80	10	341	45	12	13	28	1.79
20924873--20925027	80	1.9	82	89	2	242	47	11	11	29	1.75
20925464--20925505	18	2.3	18	88	8	59	23	26	0	50	1.50
20925634--20925691	25	2.5	21	86	13	71	17	15	0	67	1.24
20937484--20937968	243	2.0	243	96	0	898	26	21	11	40	1.88
20941158--20941243	45	1.9	45	88	4	129	54	10	23	11	1.67
20942791--20942910	61	2.0	61	88	3	179	27	14	11	46	1.79
20947119--20947154	15	2.4	15	90	0	54	13	0	19	66	1.24
20950363--20950388	3	8.7	3	100	0	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20953876--20953918	17	2.6	16	82	10	50	20	2	2	74	1.04
20954171--20954214	13	3.3	13	84	6	61	11	6	22	59	1.55
20954352--20954402	16	3.1	16	82	2	66	29	1	0	68	1.00
20955531--20955570	21	2.0	21	85	14	57	15	20	10	55	1.68
20957392--20957442	21	2.5	20	75	6	50	41	1	0	56	1.10
20958075--20958112	12	3.2	12	82	10	51	73	0	0	26	0.83
20958352--20958396	24	1.9	24	95	4	83	48	28	4	17	1.66
20963326--20963366	20	2.0	20	90	0	64	46	4	2	46	1.37
20964832--20964886	20	2.7	21	88	2	69	54	10	7	27	1.61
20964841--20964886	20	2.3	20	92	0	74	56	13	8	21	1.63
20966912--20966965	19	2.8	19	94	2	90	51	37	0	11	1.37
20966891--20967030	13	10.9	12	75	13	86	50	35	1	13	1.51
20966943--20967081	64	2.2	65	82	3	165	47	33	2	15	1.61
20967243--20967280	17	2.1	18	85	9	51	26	18	7	47	1.76
20967211--20967280	18	3.9	19	71	19	60	27	18	7	47	1.75
20967607--20967652	8	5.9	8	80	14	51	82	0	17	0	0.67
20968248--20968302	16	3.4	16	78	9	58	76	1	7	14	1.08
20969147--20969185	19	2.1	19	85	9	53	82	17	0	0	0.68
20969348--20969501	38	4.2	38	74	9	111	37	20	9	33	1.85
20969371--20969537	37	4.5	37	76	7	142	34	22	10	33	1.88
20971699--20971725	8	3.4	8	100	0	54	88	0	0	11	0.50
20971721--20971899	94	1.9	92	89	4	279	48	6	17	27	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20971851--20972037	94	2.0	95	89	5	290	34	22	14	28	1.93
20973065--20973110	19	2.4	18	82	10	56	78	0	15	6	0.95
20975522--20975720	56	3.6	54	77	6	193	22	13	19	44	1.85
20983829--20984087	140	1.8	139	82	4	333	30	8	15	45	1.76
20984917--20984967	21	2.5	21	81	9	61	47	13	21	17	1.82
20990143--20990177	6	5.8	6	86	0	52	77	5	17	0	0.96
20992288--20992335	10	4.8	10	79	7	53	20	10	22	45	1.81
20992288--20992342	20	2.7	21	80	8	69	21	9	23	45	1.80
20992697--20992724	14	2.0	14	100	0	56	35	7	21	35	1.81
20993227--20993270	16	3.0	15	78	15	56	9	11	9	70	1.34
20993227--20993280	27	1.9	28	88	7	83	11	12	9	66	1.44
20994829--20994866	20	2.0	20	89	5	60	63	10	7	18	1.50
20995155--20995278	25	5.5	22	68	23	62	50	13	2	33	1.55
20995158--20995270	23	5.1	21	75	15	79	49	14	2	33	1.57
20995190--20995280	46	1.9	48	88	6	141	49	14	2	34	1.55
20995177--20995278	23	4.3	25	72	20	94	50	14	1	33	1.55
20997228--20997290	17	3.8	17	71	25	53	4	19	1	74	1.08
20997243--20997294	13	4.0	13	76	13	54	1	15	1	80	0.88
20999179--20999264	31	2.8	32	80	3	86	34	11	26	26	1.91
20999544--20999732	60	3.2	58	76	13	172	29	12	21	37	1.90
20999616--20999775	60	2.7	60	78	4	153	30	13	23	33	1.92
21000616--21000847	75	3.1	74	80	4	243	21	24	12	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21000616--21000904	75	3.9	74	76	6	242	20	23	13	42	1.87
21001988--21002057	36	1.9	36	91	5	115	54	0	17	28	1.43
21004571--21004611	11	3.6	11	87	6	64	70	0	2	26	0.99
21007884--21007940	17	3.2	18	80	12	64	49	0	0	50	1.00
21007890--21007942	19	3.0	18	86	8	74	47	0	0	52	1.00
21013382--21013415	17	2.0	17	88	0	50	82	2	5	8	0.93
21013687--21013711	13	1.9	13	100	0	50	68	0	24	8	1.16
21014435--21014500	27	2.4	27	94	0	114	37	16	7	37	1.77
21023313--21023347	15	2.2	17	90	10	56	60	2	5	31	1.35
21023379--21023426	20	2.4	19	80	13	51	72	6	0	20	1.05
21025433--21025476	21	2.2	20	91	4	70	75	0	4	20	0.98
21037319--21037383	28	2.3	29	78	10	71	47	7	1	43	1.41
21037719--21037745	2	13.5	2	100	0	54	48	0	0	51	1.00
21052880--21052913	17	2.0	17	94	0	59	64	8	0	26	1.22
21052981--21053076	19	5.2	18	70	8	61	66	4	2	27	1.21
21053341--21053395	19	2.9	19	78	7	58	45	3	1	49	1.30
21053486--21053550	29	2.2	28	76	12	69	27	3	4	64	1.28
21053498--21053550	28	1.9	27	85	11	72	24	3	5	66	1.31
21053469--21053641	66	2.6	64	78	8	152	31	2	2	63	1.19
21053579--21053665	18	4.7	19	84	9	92	40	3	1	55	1.24
21053574--21053659	27	3.1	28	74	14	90	36	3	0	60	1.14
21053575--21053644	36	1.9	36	88	5	106	40	1	0	58	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21054276--21054329	13	4.6	12	76	19	51	42	0	1	55	1.10
21054286--21054339	22	2.4	22	76	11	56	48	0	1	50	1.11
21054386--21054418	16	2.1	16	94	0	57	45	0	0	54	0.99
21054382--21054420	19	2.1	19	95	0	69	46	0	0	53	1.00
21054378--21054451	30	2.5	30	84	0	94	54	0	0	45	1.00
21054579--21054659	11	7.4	11	76	15	62	46	0	1	51	1.08
21054579--21054639	18	3.3	18	95	4	104	49	0	0	50	1.00
21054566--21054755	29	6.0	29	69	20	121	49	1	3	45	1.27
21054566--21054740	66	2.7	61	77	10	170	49	1	2	45	1.26
21054775--21054872	10	9.4	10	69	8	61	38	2	2	57	1.22
21054773--21055163	21	18.6	21	66	15	123	46	2	3	47	1.32
21054964--21055103	15	9.3	15	66	17	51	46	1	5	47	1.33
21057132--21057200	7	10.7	6	79	10	59	76	1	1	20	0.94
21057122--21057202	14	5.9	14	76	12	62	76	3	1	18	1.00
21057122--21057201	13	5.9	13	72	16	65	76	3	1	18	1.01
21057963--21058003	3	13.7	3	100	0	82	68	0	0	31	0.90
21058700--21058743	15	2.8	16	77	19	56	70	0	0	29	0.88
21058708--21058741	7	4.7	7	85	7	50	70	0	0	29	0.87
21060233--21060321	15	5.8	16	81	12	98	50	30	0	19	1.48
21060240--21060381	29	4.7	31	78	14	115	48	29	0	21	1.51
21066786--21066840	19	2.9	19	79	15	60	81	1	9	7	0.93
21066794--21066839	13	3.3	13	82	14	56	82	2	8	6	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21068548--21068644	41	2.4	41	87	6	135	34	17	17	30	1.93
21068774--21068867	44	2.1	44	86	0	125	32	24	13	28	1.94
21069034--21069077	22	2.0	22	86	8	63	29	27	15	27	1.96
21068940--21069483	110	4.9	110	82	2	592	21	19	18	40	1.91
21069253--21069296	22	2.0	22	86	8	63	29	22	15	31	1.95
21068940--21069518	219	2.6	219	80	3	619	22	19	18	40	1.92
21069467--21069528	23	2.7	23	87	2	90	27	25	17	29	1.98
21069599--21069647	22	2.2	23	89	10	75	26	24	20	28	1.99
21069355--21069713	131	2.7	132	81	6	404	23	19	18	38	1.93
21071457--21071545	15	5.8	16	81	12	98	50	30	0	19	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190