genome.fa.s223.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  78  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12675434--12675486	26	2.0	26	88	0	79	26	20	24	28	1.99
12676332--12676384	26	2.0	26	96	0	97	28	20	24	26	1.99
12674684--12682576	902	8.9	901	86	3	10111	25	23	25	25	2.00
12679008--12679060	26	2.0	26	92	0	88	26	16	26	30	1.97
12679900--12679950	26	2.0	26	84	0	66	31	15	25	27	1.96
12671902--12682576	866	12.1	887	83	6	12173	25	23	25	25	2.00
12680775--12680825	26	2.0	26	88	0	75	31	17	25	25	1.97
12681645--12681697	26	2.0	26	92	0	88	30	22	20	26	1.98
12684040--12684092	26	2.0	26	96	0	97	26	18	26	28	1.98
12684227--12684277	26	2.0	26	92	0	84	29	17	25	27	1.98
12684011--12684436	185	2.3	185	83	1	505	22	27	27	23	1.99
12685818--12685870	26	2.0	26	88	0	79	26	18	26	28	1.98
12686734--12686786	26	2.0	26	92	0	88	26	24	24	24	2.00
12685106--12689596	916	5.0	900	82	6	5371	25	23	25	25	2.00
12687586--12687638	26	2.0	26	92	0	88	26	16	26	30	1.97
12687052--12689615	898	2.9	893	86	2	3555	25	23	24	26	2.00
12690363--12690414	26	2.0	26	88	7	79	26	15	25	32	1.95
12691608--12691658	26	2.0	26	88	7	77	31	15	23	29	1.95
12690880--12698658	887	8.6	886	72	13	4834	25	24	24	25	2.00
12694208--12694259	26	2.0	26	88	0	77	32	19	21	26	1.97
12694377--12694429	26	2.0	26	100	0	106	26	20	26	26	1.99
12696155--12698658	905	2.8	890	86	5	3121	25	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12700888--12700940	26	2.0	26	92	0	88	26	22	22	28	1.99
12700048--12702447	902	2.7	899	88	2	3507	26	24	23	24	2.00
12701790--12701842	26	2.0	26	92	0	88	24	24	22	28	2.00
12704170--12704221	26	2.0	26	100	0	104	30	23	19	26	1.98
12705071--12705123	26	2.0	26	88	0	79	28	26	18	26	1.98
12703296--12706301	903	3.4	895	85	5	3869	25	24	24	25	2.00
12705951--12706003	26	2.0	26	96	0	97	28	26	18	26	1.98
12706371--12706423	26	2.0	26	88	0	79	28	24	18	28	1.98
12705882--12706734	433	2.0	419	84	5	1115	21	25	26	26	1.99
12708147--12708199	26	2.0	26	100	0	106	26	26	20	26	1.99
12706301--12709066	882	3.1	877	83	8	3406	25	24	24	25	2.00
12708868--12709248	161	2.4	159	82	6	441	21	29	28	19	1.98
12710773--12711170	161	2.5	159	83	3	478	20	26	29	22	1.99
12711989--12712041	26	2.0	26	96	0	97	26	24	20	28	1.99
12712990--12713018	13	2.1	14	93	6	51	13	37	37	10	1.79
12713011--12713035	10	2.5	10	100	0	50	20	40	28	12	1.87
12710933--12713672	897	3.1	881	84	6	3399	25	24	24	25	2.00
12713021--12715092	710	2.9	710	95	0	3544	27	23	23	26	2.00
12716095--12716145	26	2.0	26	96	0	93	29	23	17	29	1.97
12720501--12720553	26	2.0	26	100	0	106	26	26	20	26	1.99
12718530--12722287	900	4.2	887	81	8	4239	25	25	23	25	2.00
12723267--12723319	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12723108--12723533	185	2.3	185	83	1	523	23	28	26	21	1.99
12723452--12723504	26	2.0	26	96	0	97	28	26	18	26	1.98
12724207--12725697	715	2.1	718	88	3	2240	26	24	23	25	2.00
12725315--12726369	536	2.0	536	88	0	1563	28	26	21	23	1.99
12726337--12726389	26	2.0	26	92	0	88	28	24	18	28	1.98
12727240--12727292	26	2.0	26	88	0	79	30	20	20	28	1.98
12728107--12728157	26	2.0	26	88	0	75	25	25	17	31	1.97
12729578--12729630	26	2.0	26	96	0	97	28	26	18	26	1.98
12728395--12734086	896	6.4	893	84	5	6925	25	25	24	25	2.00
12731366--12731418	26	2.0	26	92	0	88	28	24	18	28	1.98
12732229--12732284	26	2.2	26	90	0	85	28	23	19	28	1.98
12728395--12734086	895	6.4	874	83	6	6093	25	25	24	25	2.00
12732258--12734033	876	2.0	871	87	2	2598	25	23	24	25	2.00
12734007--12734059	26	2.0	26	96	0	97	26	24	20	28	1.99
12734192--12734244	26	2.0	26	96	0	97	28	26	20	24	1.99
12733848--12734265	185	2.3	185	87	2	581	22	27	27	22	1.99
12735090--12735140	26	2.0	26	96	0	93	29	25	15	29	1.96
12734033--12740067	897	6.7	896	76	10	5452	25	25	24	25	2.00
12736865--12736917	26	2.0	26	92	0	88	24	22	22	30	1.99
12737878--12737930	26	2.0	26	88	0	79	32	24	18	24	1.97
12738770--12738821	26	2.0	26	100	0	104	30	26	15	26	1.96
12737576--12740067	901	2.8	889	85	5	3318	25	25	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12739765--12740380	312	2.0	314	88	2	916	23	22	26	28	1.99
12740857--12740909	26	2.0	26	89	7	81	28	24	16	30	1.97
12740106--12743541	873	3.9	865	85	4	4266	25	24	24	25	2.00
12743318--12743708	159	2.5	159	83	2	473	21	27	29	21	1.99
12744352--12744716	158	2.3	158	83	3	457	21	29	28	21	1.98
12744687--12744742	26	2.2	26	96	0	103	26	25	21	26	1.99
12745591--12745641	26	2.0	26	96	0	93	27	21	19	31	1.97
12744509--12760511	894	18.0	900	82	6	17725	26	24	23	25	2.00
12748196--12748248	26	2.0	26	96	0	97	28	26	18	26	1.98
12749100--12749152	26	2.0	26	96	0	97	28	26	18	26	1.98
12749994--12750046	26	2.0	26	88	0	79	28	26	20	24	1.99
12751769--12751825	29	2.0	29	92	0	96	28	21	21	29	1.98
12753555--12753611	26	2.2	26	90	0	87	29	22	17	29	1.97
12753565--12753633	26	2.7	26	88	0	93	31	26	11	30	1.91
12751796--12760511	908	9.7	917	81	8	9394	26	24	23	25	2.00
12754487--12754537	26	2.0	26	88	0	75	25	21	21	31	1.98
12755381--12755433	26	2.0	26	88	0	79	28	26	18	26	1.98
12756261--12756310	26	1.9	26	95	0	91	26	24	20	30	1.98
12757147--12757225	26	3.0	26	90	0	122	29	24	18	27	1.98
12758071--12758149	26	3.0	26	90	0	122	26	22	20	30	1.98
12756261--12760511	924	4.7	922	80	10	4598	26	24	23	25	2.00
12758962--12759014	26	2.0	26	92	0	88	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12759823--12759873	26	2.0	26	92	0	84	25	23	21	29	1.99
12762999--12763077	26	3.0	26	92	0	131	30	18	24	26	1.98
12763927--12764005	26	3.0	25	88	3	113	26	17	25	30	1.97
12762094--12765803	923	4.0	917	85	5	5048	25	23	25	25	2.00
12764835--12764895	26	2.4	26	83	5	81	27	21	22	27	1.99
12765751--12765803	26	2.0	26	96	0	97	28	20	24	26	1.99
12766598--12766658	26	2.4	26	83	5	81	27	21	22	27	1.99
12768383--12768461	26	3.0	26	94	0	140	29	18	22	29	1.98
12765882--12775560	901	10.8	898	84	5	11732	25	24	24	25	2.00
12771086--12771138	26	2.0	26	92	0	88	26	20	26	26	1.99
12770278--12775560	899	5.9	899	86	4	6971	25	24	24	25	2.00
12772888--12772940	26	2.0	26	92	0	88	30	20	22	26	1.98
12773787--12773839	26	2.0	26	96	0	97	26	18	26	28	1.98
12776914--12776966	26	2.0	26	100	0	106	26	20	26	26	1.99
12778673--12778725	26	2.0	26	92	0	88	26	18	26	28	1.98
12776874--12781374	873	5.1	890	83	6	5494	25	23	24	25	2.00
12779573--12779625	26	2.0	26	96	0	97	26	22	26	24	2.00
12780446--12780498	26	2.0	26	92	0	88	28	18	26	26	1.98
12783470--12783522	26	2.0	26	96	0	97	26	20	24	28	1.99
12781715--12784283	892	2.9	885	87	4	3659	24	23	25	26	2.00
12784716--12784768	26	2.0	26	92	0	88	30	22	22	24	1.99
12784949--12784974	4	6.5	4	100	0	52	0	26	73	0	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12785622--12785674	26	2.0	26	92	0	88	28	22	24	24	2.00
12786496--12786548	26	2.0	26	96	0	97	24	20	28	26	1.99
12784333--12797037	900	14.2	874	74	12	7571	25	24	25	25	2.00
12787393--12787445	26	2.0	26	92	0	88	24	18	26	30	1.98
12787578--12787630	26	2.0	26	96	0	97	28	20	24	26	1.99
12789349--12789401	26	2.0	26	88	0	79	28	20	24	26	1.99
12790214--12790264	26	2.0	26	92	0	84	29	17	23	29	1.97
12794632--12794684	26	2.0	26	92	0	88	26	16	26	30	1.97
12795523--12795573	26	2.0	26	88	0	75	31	17	25	25	1.97
12787570--12797037	866	10.7	891	84	5	11149	25	23	25	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190