genome.fa.s223.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  24  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3815762--3815791	2	15.0	2	92	0	51	0	0	46	53	1.00
3823565--3823615	21	2.5	21	87	12	79	52	0	0	47	1.00
3824882--3824955	30	2.4	30	84	6	87	56	0	2	40	1.13
3825158--3825191	18	1.9	17	88	5	50	79	0	8	11	0.94
3828998--3829450	223	2.0	224	95	0	809	27	12	20	39	1.88
3838909--3838971	29	2.2	28	80	5	74	44	0	1	53	1.10
3838952--3839006	26	2.2	24	83	6	65	50	0	0	49	1.00
3846166--3846347	90	2.0	90	94	0	319	32	15	13	38	1.86
3846325--3846359	2	17.5	2	100	0	70	48	0	0	51	1.00
3854332--3854368	17	2.2	17	95	0	65	51	10	37	0	1.37
3859639--3859679	15	2.6	17	81	18	61	46	0	0	53	1.00
3866720--3866759	10	4.0	10	84	12	55	67	2	0	30	1.04
3881697--3881801	52	2.0	52	85	7	142	24	19	9	46	1.79
3884999--3885024	2	13.0	2	100	0	52	50	0	0	50	1.00
3886370--3886416	24	2.0	24	87	8	69	31	0	2	65	1.04
3888843--3888953	25	4.3	25	67	15	73	46	0	6	46	1.28
3889636--3889679	14	2.8	16	86	13	56	43	0	0	56	0.99
3892989--3893036	20	2.3	20	75	3	51	41	10	0	47	1.37
3893026--3893079	18	2.8	19	76	13	56	37	11	0	51	1.37
3900080--3900158	38	2.0	39	82	4	97	43	10	7	39	1.67
3910935--3910990	15	3.9	14	75	13	51	50	0	0	50	1.00
3910934--3910990	30	2.0	28	86	13	80	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3910947--3910991	21	2.1	21	88	8	65	51	0	0	48	1.00
3914579--3914616	17	2.2	17	90	0	58	26	13	18	42	1.87
3915092--3915145	22	2.5	22	84	0	63	44	3	1	50	1.30
3916672--3916705	17	1.9	18	88	5	52	38	0	0	61	0.96
3918547--3918587	13	3.2	13	82	0	55	39	0	0	60	0.96
3921951--3921984	17	1.9	17	88	5	50	14	5	2	76	1.09
3924615--3924665	26	2.0	26	84	0	66	43	7	1	47	1.43
3924364--3924714	194	1.8	194	82	5	451	35	9	7	47	1.66
3924730--3924792	25	2.5	26	77	10	69	74	6	1	17	1.10
3925520--3925601	9	9.3	9	77	15	64	74	2	1	21	1.01
3925530--3925595	8	8.0	8	80	11	71	72	3	1	22	1.06
3925521--3925595	17	4.5	17	75	12	75	74	2	1	21	1.01
3925523--3925588	25	2.7	24	83	6	78	75	3	1	19	1.01
3925855--3925990	41	3.4	41	88	3	188	44	16	13	24	1.84
3926968--3927005	8	4.9	8	93	6	69	23	0	0	76	0.79
3932176--3932256	37	2.2	37	95	2	146	27	7	19	45	1.77
3936405--3936508	52	2.0	52	90	0	163	46	6	21	25	1.76
3938086--3938143	26	2.3	24	79	5	62	41	8	3	46	1.51
3938103--3938157	25	2.2	25	83	9	67	40	5	5	49	1.49
3938965--3939033	3	24.7	3	75	16	51	73	2	1	21	1.04
3938968--3939033	8	7.6	8	76	20	62	74	3	1	21	1.04
3938968--3939042	27	2.8	26	86	10	98	73	2	1	22	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3941517--3941622	6	17.2	6	71	15	65	77	0	4	16	0.99
3941532--3941616	14	5.7	15	74	16	70	80	1	3	15	0.92
3941538--3941616	9	8.2	9	78	15	70	79	1	3	15	0.93
3941517--3941620	31	3.4	29	81	18	115	76	0	4	17	1.00
3941983--3942023	20	2.0	20	85	0	55	36	19	7	36	1.80
3942482--3942542	3	20.3	3	93	0	104	65	1	1	31	1.12
3942992--3943321	64	5.2	64	70	7	188	44	12	19	23	1.84
3943458--3943510	18	3.0	18	80	5	63	33	9	18	37	1.83
3943458--3943509	17	3.0	17	82	2	59	34	9	19	36	1.84
3944657--3944720	30	2.1	30	85	0	83	21	9	10	57	1.61
3947451--3947490	21	1.9	21	84	0	53	55	7	17	20	1.66
3949022--3949052	11	2.8	11	95	0	53	29	48	9	12	1.73
3949701--3949740	17	2.4	16	87	4	62	77	0	5	17	0.94
3949668--3949754	23	3.9	21	76	18	70	72	0	8	19	1.09
3950590--3950700	3	36.7	3	92	1	96	65	11	0	21	1.30
3952849--3952878	14	2.1	14	93	0	51	43	13	26	16	1.85
3957940--3957999	29	2.1	29	87	6	86	35	13	10	41	1.78
3959942--3960046	14	7.5	14	67	18	58	50	0	0	49	1.00
3959945--3960004	31	1.9	32	86	10	88	50	0	0	50	1.00
3959968--3960039	28	2.7	25	83	12	81	50	0	0	50	1.00
3961996--3962125	65	2.0	65	98	0	251	23	18	20	36	1.94
3962182--3962345	54	3.0	54	63	19	142	26	16	20	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3962117--3962345	108	2.1	108	98	0	442	27	16	20	35	1.94
3968163--3968232	28	2.6	26	78	10	70	57	2	5	34	1.37
3968651--3968703	19	2.8	19	75	10	56	43	0	0	56	0.99
3968839--3968867	11	2.7	11	94	5	51	20	0	0	79	0.74
3980659--3981077	210	2.0	203	94	5	734	27	14	3	55	1.54
3984046--3984087	21	2.0	22	90	4	68	61	0	0	38	0.96
3985132--3985183	23	2.3	23	80	3	61	57	1	0	40	1.10
3985231--3985269	21	1.9	20	89	5	60	58	10	0	30	1.31
4011150--4011190	20	2.1	20	86	4	57	34	4	4	56	1.42
4011300--4011371	30	2.4	29	72	4	72	45	5	6	41	1.54
4012652--4012706	18	2.9	19	71	20	53	32	3	5	58	1.38
4021523--4021561	19	2.0	20	85	9	55	58	0	2	38	1.12
4023249--4023297	25	2.0	26	84	8	66	55	6	16	22	1.63
4027109--4027158	21	2.4	21	100	0	100	34	24	16	26	1.95
4036379--4036455	37	2.1	37	95	0	136	37	20	14	27	1.91
4038797--4038844	23	2.1	23	92	0	78	56	0	4	39	1.19
4038838--4038879	13	2.9	15	82	13	52	59	0	0	40	0.97
4038836--4038884	14	3.5	13	76	13	53	61	0	0	38	0.96
4039590--4039635	12	3.6	13	77	14	51	39	0	2	58	1.10
4042724--4042749	3	8.7	3	100	0	52	69	0	0	30	0.89
4047888--4047954	19	3.6	19	78	11	68	44	1	0	53	1.09
4056114--4056145	12	2.8	12	95	4	57	0	21	21	56	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4057096--4057142	24	2.0	24	91	4	78	57	0	2	40	1.11
4058802--4058867	21	3.1	21	80	8	80	15	33	21	30	1.94
4069962--4070009	19	2.6	18	81	18	55	62	2	0	35	1.07
4069970--4070018	15	3.2	16	83	16	52	61	4	0	34	1.15
4070066--4070130	15	4.5	15	72	18	57	70	6	1	21	1.17
4070285--4070337	18	2.9	18	86	5	72	7	0	7	84	0.76
4070286--4070336	9	5.3	10	80	13	54	3	0	7	88	0.63
4070343--4070638	41	7.1	42	92	2	483	36	23	16	23	1.94
4070343--4070638	83	3.6	83	92	2	479	36	23	16	23	1.94
4071825--4071877	26	2.0	26	85	7	72	3	13	0	83	0.79
4071825--4071879	16	3.4	16	85	7	67	3	12	0	83	0.77
4071825--4071879	17	3.4	16	85	9	67	3	12	0	83	0.77
4075745--4075901	56	2.7	59	91	3	257	36	12	6	44	1.68
4075925--4075974	15	3.3	15	73	21	50	76	0	12	12	1.04
4075925--4075986	29	2.1	31	82	11	76	77	1	9	11	1.06
4076027--4076065	20	2.0	20	89	0	60	82	5	2	10	0.93
4076422--4076466	22	2.0	22	82	0	54	28	20	28	22	1.98
4076583--4076635	26	2.0	27	82	10	65	43	18	5	32	1.74
4077094--4077146	3	17.3	3	80	18	56	64	0	0	35	0.94
4077098--4077155	19	3.2	17	76	23	57	62	1	0	36	1.06
4077095--4077155	23	2.8	21	83	11	70	62	1	0	36	1.05
4077094--4077229	12	11.6	12	69	24	53	61	4	0	33	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4082453--4082824	189	2.0	186	95	1	663	38	20	16	24	1.92
4083571--4083599	10	2.7	11	94	5	51	0	13	0	86	0.58
4084205--4084239	16	2.2	16	89	0	52	60	2	0	37	1.12
4084328--4084367	16	2.4	17	87	4	55	62	2	0	35	1.09
4085025--4085066	18	2.3	18	87	4	57	33	0	9	57	1.31
4085392--4085438	20	2.3	20	75	7	51	53	0	2	44	1.12
4083758--4085584	920	2.0	903	92	4	3029	39	11	11	37	1.78
4086526--4086581	28	2.0	29	89	3	87	28	5	7	58	1.46
4087063--4087099	18	2.0	19	85	15	51	54	0	0	45	1.00
4087067--4087148	29	2.8	29	79	17	82	52	0	2	45	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190