genome.fa.s223.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  57  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9399802--9399856	24	2.3	23	81	9	67	80	3	12	3	0.98
9400666--9400927	119	2.2	120	81	1	292	18	19	12	50	1.78
9400666--9400949	120	2.4	120	78	1	282	18	18	12	50	1.77
9401548--9401738	5	37.6	5	74	16	121	38	5	1	55	1.29
9401570--9401757	3	66.3	3	75	16	116	37	4	1	57	1.25
9404191--9404237	24	2.0	24	86	0	67	40	14	19	25	1.90
9404586--9404648	25	2.6	23	70	9	54	25	1	12	60	1.42
9404753--9404794	14	3.1	14	75	6	50	59	0	0	40	0.97
9409880--9409975	38	2.6	38	82	8	101	42	18	8	30	1.80
9414224--9414258	12	2.8	13	86	8	54	85	0	11	2	0.69
9414230--9414277	16	3.1	16	84	3	62	77	0	20	2	0.88
9414984--9415047	30	2.1	30	85	0	83	56	1	0	42	1.09
9415683--9416023	158	2.2	152	81	8	367	51	7	19	20	1.72
9416924--9417085	86	1.9	87	82	1	209	39	15	11	33	1.84
9417731--9417818	32	2.8	32	80	3	106	37	27	11	23	1.89
9417878--9417944	22	3.0	23	80	4	82	35	25	10	28	1.89
9418532--9418617	28	3.0	26	77	15	82	76	11	3	8	1.12
9418527--9418627	31	3.5	29	75	17	77	76	11	2	8	1.13
9418581--9418641	14	4.4	14	80	10	54	75	13	3	8	1.15
9421236--9421270	17	2.0	18	88	5	54	48	2	0	48	1.16
9423918--9424001	40	2.1	41	90	2	134	40	14	13	32	1.84
9424242--9424287	2	24.0	2	82	8	60	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9427898--9427954	28	2.0	29	83	10	73	47	0	3	49	1.18
9427979--9428011	16	2.1	16	88	5	50	63	0	6	30	1.18
9430011--9430056	18	2.5	19	89	10	78	30	19	10	39	1.86
9430771--9430819	3	16.3	3	100	0	98	67	0	0	32	0.91
9431047--9431132	42	2.0	42	84	4	111	26	6	30	36	1.83
9433699--9433841	73	2.0	73	95	0	259	27	18	9	44	1.81
9436682--9436717	3	12.0	3	100	0	72	66	0	0	33	0.92
9441176--9441220	12	3.8	12	90	0	63	22	22	6	48	1.73
9444202--9444263	18	3.4	18	74	14	56	75	1	14	8	1.10
9446043--9446097	20	2.8	20	80	2	67	80	1	5	12	0.97
9448897--9449123	51	4.4	49	76	12	197	34	15	14	34	1.89
9449123--9449175	2	26.5	2	90	0	79	0	43	1	54	1.11
9458580--9458619	20	2.0	21	85	5	55	12	17	2	67	1.33
9464638--9465021	29	13.5	28	72	5	214	34	21	15	29	1.94
9464643--9465001	57	6.3	57	73	6	188	33	20	15	30	1.94
9464699--9465057	114	3.1	111	74	8	301	33	20	15	29	1.94
9464653--9465001	86	4.1	86	75	7	237	33	20	15	30	1.94
9465068--9465113	23	2.0	23	82	0	56	26	21	17	34	1.95
9465041--9465141	52	2.0	50	82	3	121	30	20	16	31	1.95
9465449--9465626	81	2.2	81	83	2	214	33	12	16	38	1.86
9468327--9468388	16	3.9	16	80	6	72	50	24	1	24	1.59
9468408--9468510	47	2.4	42	87	9	93	41	31	4	22	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9468352--9468514	16	10.2	16	78	7	127	45	29	3	21	1.69
9468421--9468514	31	3.0	32	89	4	138	44	28	4	22	1.71
9468423--9468514	47	2.0	47	100	0	184	45	28	4	21	1.71
9470554--9470582	9	3.3	9	95	4	51	72	0	0	27	0.85
9478445--9478501	24	2.5	22	80	5	69	28	8	3	59	1.44
9480566--9480611	17	2.8	16	78	18	58	43	10	10	34	1.75
9482565--9482963	143	2.8	142	78	3	415	41	14	14	30	1.84
9483109--9483158	19	2.5	20	80	6	66	24	10	10	56	1.63
9483727--9483939	35	6.0	36	75	10	197	51	15	16	15	1.77
9483877--9484013	71	1.9	73	83	3	179	49	15	17	17	1.80
9484047--9484185	71	2.0	71	95	0	251	51	17	16	14	1.77
9484047--9484169	36	3.4	36	75	6	133	49	19	16	14	1.79
9484296--9484422	35	3.6	35	88	0	173	46	17	22	14	1.83
9484831--9484902	32	2.2	32	85	0	99	36	18	15	30	1.91
9485051--9485197	81	1.9	80	84	5	201	29	13	15	40	1.86
9486161--9486205	19	2.4	19	100	0	90	26	20	11	42	1.85
9486205--9486744	142	3.8	140	72	13	383	19	20	8	51	1.72
9486984--9487025	10	3.9	11	90	9	61	11	11	0	76	1.03
9492657--9492862	114	1.8	114	87	2	306	39	17	11	32	1.85
9494794--9494947	35	4.3	35	73	8	98	52	16	14	15	1.75
9495153--9495271	36	3.3	36	70	14	102	46	12	23	17	1.82
9495348--9495489	35	4.0	35	74	8	101	46	13	23	16	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9495500--9495634	70	1.9	70	84	11	179	54	15	16	13	1.71
9502922--9502977	2	28.0	2	85	0	76	48	7	0	44	1.30
9502920--9502976	14	4.1	14	90	0	87	49	8	0	42	1.34
9503656--9503686	16	1.9	16	93	0	53	45	9	12	32	1.75
9505346--9505736	143	2.7	143	83	5	461	43	13	11	30	1.80
9506135--9506175	3	13.7	3	100	0	82	68	0	0	31	0.90
9508010--9508041	16	2.0	16	100	0	64	25	25	6	43	1.77
9508286--9508321	2	18.0	2	88	0	54	47	2	0	50	1.15
9511595--9511641	20	2.4	19	82	13	51	29	6	4	59	1.41
9512301--9512326	8	3.2	8	100	0	52	50	0	0	50	1.00
9513605--9513634	14	2.1	14	100	0	60	36	20	0	43	1.52
9516397--9516430	2	17.0	2	100	0	68	0	50	0	50	1.00
9518296--9518347	23	2.3	23	100	0	104	36	26	3	32	1.75
9522972--9523024	6	8.8	6	91	0	79	30	47	3	18	1.67
9522990--9523028	12	3.2	12	96	0	69	30	46	0	23	1.53
9523749--9523824	3	26.0	3	90	2	111	28	2	1	67	1.12
9524294--9524319	12	2.2	12	100	0	52	23	0	19	57	1.40
9524278--9524346	32	2.2	32	86	0	102	21	5	20	52	1.67
9524587--9524622	19	1.9	18	88	5	54	16	11	2	69	1.29
9524596--9524670	24	3.1	23	75	21	64	25	2	1	70	1.08
9524628--9524670	7	6.4	7	94	5	72	27	0	0	72	0.85
9524628--9524685	14	4.4	13	80	10	64	25	0	3	70	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9525894--9525961	29	2.4	29	76	13	72	51	1	1	45	1.19
9526371--9526555	63	3.0	63	74	7	178	36	16	10	36	1.84
9526357--9526555	62	3.2	62	73	7	177	35	15	12	36	1.85
9526566--9526708	62	2.3	62	82	7	177	41	11	15	31	1.83
9532987--9533031	22	2.0	22	87	8	65	20	4	2	73	1.11
9533982--9534018	18	2.1	18	89	0	56	35	5	0	59	1.20
9535988--9536021	17	1.9	18	88	5	52	55	2	5	35	1.39
9536117--9536165	19	2.6	19	83	0	71	46	8	12	32	1.71
9538279--9538330	21	2.5	21	81	9	63	28	1	0	69	0.99
9539029--9539095	29	2.3	29	82	5	73	35	2	0	61	1.12
9542628--9542783	77	2.0	77	96	0	285	30	16	14	38	1.88
9544539--9544578	21	1.9	21	89	0	62	40	2	2	55	1.27
9547673--9547718	18	2.6	18	82	0	56	28	2	2	67	1.14
9547891--9547942	22	2.3	22	80	9	52	23	1	7	67	1.27
9549098--9549140	12	3.3	12	79	17	50	9	4	13	72	1.26
9549391--9550408	49	21.0	49	77	6	872	37	20	12	29	1.89
9562398--9562440	18	2.4	18	80	7	52	27	6	4	60	1.43
9562615--9562666	22	2.3	22	80	9	52	23	0	9	67	1.20
9563801--9563850	7	7.4	7	80	15	52	12	6	12	70	1.34
9565840--9566108	143	1.9	142	79	6	303	30	10	15	43	1.79
9566439--9566463	12	2.1	12	100	0	50	84	0	8	8	0.79
9567498--9567582	7	12.9	7	72	12	56	45	38	2	12	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9567499--9567561	33	1.9	33	86	0	90	47	41	1	9	1.45
9567498--9567752	19	13.2	19	68	15	73	45	35	2	16	1.60
9567622--9567769	7	22.4	7	72	16	79	44	37	2	15	1.58
9567647--9567752	6	17.0	6	71	20	58	45	38	0	15	1.52
9567654--9567718	25	2.7	23	81	11	76	43	41	0	15	1.47
9567681--9567739	25	2.4	25	78	18	61	47	37	1	13	1.53
9568806--9568834	10	2.7	11	89	10	51	68	0	13	17	1.20
9569593--9569632	16	2.4	16	87	4	53	85	7	5	2	0.83
9569602--9569634	10	3.4	10	87	4	50	90	3	6	0	0.52
9569575--9569634	26	2.4	26	80	5	70	85	5	8	1	0.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190