genome.fa.s223.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  114  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17811608--17811636	11	2.6	11	100	0	58	79	6	6	6	1.06
17812304--17812333	2	15.0	2	100	0	60	50	0	50	0	1.00
17813041--17813065	3	8.3	3	100	0	50	32	68	0	0	0.90
17814405--17814473	31	2.2	31	84	0	93	39	7	5	47	1.55
17814445--17814481	15	2.4	16	86	8	51	37	8	10	43	1.69
17816204--17816236	17	1.9	17	88	11	50	21	24	15	39	1.91
17816292--17816317	2	13.0	2	100	0	52	50	0	0	50	1.00
17817652--17817721	26	2.7	26	77	14	72	4	25	1	68	1.16
17817681--17817727	17	2.8	18	78	15	55	4	23	0	72	1.02
17818207--17818241	16	2.1	16	89	10	52	80	0	14	5	0.89
17818207--17818248	22	1.9	22	85	0	57	78	0	14	7	0.95
17821176--17821210	3	11.7	3	100	0	70	34	0	0	65	0.93
17822288--17822322	18	1.9	18	94	0	61	57	0	0	42	0.99
17823021--17823088	29	2.3	29	83	11	86	42	2	14	39	1.61
17838904--17839052	77	1.9	77	94	0	262	39	22	10	28	1.86
17839663--17839750	6	15.0	6	76	4	81	25	2	7	64	1.32
17839664--17839750	24	3.7	23	86	4	111	24	2	8	65	1.31
17839675--17839750	12	6.4	12	84	3	91	23	1	9	65	1.29
17841028--17841109	20	4.1	20	75	12	78	31	4	9	53	1.55
17841040--17841124	24	4.0	22	82	13	97	31	4	8	55	1.50
17841139--17841226	24	3.7	23	78	4	104	28	4	14	52	1.62
17841209--17841242	14	2.4	14	90	9	52	26	5	14	52	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17842669--17842712	23	2.0	23	82	8	56	45	9	29	15	1.77
17845515--17845665	75	2.0	75	96	0	275	39	9	20	30	1.85
17846384--17846425	17	2.6	16	85	14	59	83	0	11	4	0.79
17847873--17847976	43	2.5	42	84	6	131	27	14	17	40	1.88
17847972--17848010	19	2.1	19	95	0	69	41	20	7	30	1.80
17848019--17848157	43	3.2	43	83	2	145	30	12	15	40	1.85
17848397--17848493	6	16.7	6	76	8	85	26	1	8	63	1.29
17848398--17848466	23	3.0	22	83	10	84	24	1	7	66	1.25
17848409--17848489	12	6.8	12	84	8	96	24	0	9	65	1.23
17848531--17848559	5	5.8	5	100	0	58	82	0	0	17	0.66
17848600--17848763	85	1.9	87	86	2	233	25	12	20	41	1.87
17849614--17849664	15	3.6	15	82	10	63	7	1	11	78	1.04
17849597--17849683	9	9.1	10	72	14	51	8	3	10	78	1.08
17849597--17849660	30	2.2	28	86	10	85	7	3	12	76	1.11
17849740--17849792	27	2.0	27	82	14	65	20	3	18	56	1.57
17849798--17849978	24	8.5	21	79	16	153	30	4	10	54	1.54
17849786--17849957	20	8.2	20	80	9	125	30	4	9	55	1.50
17849998--17850131	24	5.6	24	87	5	182	29	5	13	51	1.64
17850725--17850755	14	2.1	15	94	5	55	51	0	0	48	1.00
17850722--17850757	17	2.1	18	94	5	65	52	0	0	47	1.00
17851081--17851133	26	2.0	28	85	7	74	79	1	9	9	1.02
17853413--17853450	17	2.2	17	90	9	60	78	5	5	10	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17854228--17854345	34	3.5	34	79	3	105	42	19	7	30	1.79
17856780--17856818	3	13.0	3	94	0	69	30	2	0	66	1.05
17858825--17858900	31	2.4	32	82	6	102	13	26	2	57	1.49
17870032--17870071	21	1.9	21	94	0	71	52	2	7	37	1.43
17870100--17870137	19	2.0	20	94	5	69	60	2	0	36	1.11
17873465--17873535	27	2.6	27	75	6	72	57	1	2	38	1.22
17873860--17873918	29	2.0	29	83	6	75	45	32	1	20	1.61
17890415--17890457	22	1.9	23	90	4	70	69	0	20	9	1.15
17893294--17893343	23	2.1	24	85	10	68	18	8	4	70	1.28
17896149--17896184	8	4.5	8	85	0	54	44	0	0	55	0.99
17896134--17896184	26	2.0	24	88	7	75	41	1	0	56	1.10
17896149--17896201	14	3.5	16	82	12	67	47	0	0	52	1.00
17898706--17898745	21	2.0	21	85	5	55	40	5	25	30	1.77
17898980--17899020	16	2.6	16	88	7	57	43	9	0	46	1.36
17899582--17899646	31	2.1	30	82	2	76	64	9	13	12	1.49
17900544--17900599	12	4.6	13	85	12	75	10	7	5	76	1.14
17900687--17900819	20	6.7	20	82	9	146	26	6	12	54	1.61
17900704--17900773	19	3.6	19	88	5	88	25	10	12	51	1.71
17905135--17905177	22	2.0	22	86	4	61	79	2	18	0	0.85
17906480--17906529	18	2.8	18	75	9	57	34	14	14	38	1.85
17906520--17906567	18	2.7	18	93	0	69	22	22	22	31	1.99
17906538--17906608	18	3.9	18	75	0	61	30	16	16	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17906735--17906879	35	4.1	36	79	8	111	26	13	13	46	1.79
17906782--17906899	18	6.6	17	72	12	71	27	9	13	49	1.73
17908095--17908162	27	2.7	24	78	17	66	11	5	4	77	1.08
17908121--17908162	16	2.7	15	85	7	57	11	2	4	80	0.95
17908245--17908415	20	8.6	20	74	8	136	29	7	11	51	1.65
17908245--17908335	39	2.3	40	84	3	114	29	7	10	51	1.65
17908249--17908415	59	2.8	58	81	8	185	30	7	10	50	1.65
17916645--17916720	13	6.0	13	77	20	72	75	0	17	7	1.04
17917158--17917220	14	4.6	14	78	13	60	80	0	15	3	0.83
17917156--17917196	17	2.3	18	88	12	59	80	0	14	4	0.87
17917149--17917220	25	3.0	24	80	9	76	81	0	15	2	0.79
17917149--17917227	40	1.9	39	87	7	113	78	0	16	5	0.92
17917129--17917224	50	1.9	50	82	16	119	76	0	18	5	0.98
17917573--17917607	17	2.0	18	94	5	63	74	0	20	5	1.02
17917611--17917685	38	2.0	38	91	0	123	32	10	28	29	1.90
17919243--17919363	40	3.0	40	78	7	95	38	9	14	38	1.79
17919317--17919557	40	6.1	39	78	4	171	39	15	10	34	1.82
17919971--17920016	18	2.4	19	79	13	51	78	6	8	6	1.10
17921896--17922090	7	30.0	7	78	11	150	47	36	0	15	1.50
17921896--17922090	13	15.0	13	74	13	147	47	36	0	15	1.50
17923429--17923474	17	2.8	16	80	9	56	71	0	19	8	1.11
17923617--17923646	14	2.1	15	93	6	53	76	0	10	13	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17923975--17924085	48	2.3	47	92	3	186	29	7	19	43	1.78
17923978--17924103	48	2.7	47	88	2	180	29	7	18	44	1.78
17924197--17924268	34	2.1	35	82	7	85	38	6	11	43	1.67
17924354--17924397	19	2.3	19	84	0	52	77	11	0	11	1.00
17925593--17925662	24	2.7	25	82	8	70	71	0	27	1	0.94
17925770--17925848	32	2.4	33	82	6	97	65	1	29	3	1.17
17934121--17934183	27	2.3	27	100	0	126	12	15	19	52	1.74
17935973--17936047	37	2.0	39	86	5	109	8	18	17	56	1.65
17936615--17936650	17	2.1	17	89	0	54	33	0	0	66	0.92
17936752--17936806	24	2.3	24	81	6	58	36	41	12	9	1.75
17937331--17937374	14	3.1	14	81	9	54	13	0	45	40	1.44
17939285--17939327	23	1.9	23	100	0	63	62	0	2	34	1.08
17939826--17939880	25	2.2	25	87	3	85	54	7	3	34	1.46
17940067--17940130	29	2.2	28	80	5	65	50	3	1	45	1.27
17940304--17940346	22	2.0	22	85	0	59	32	23	9	34	1.87
17941133--17941162	2	15.0	2	100	0	60	50	0	0	50	1.00
17942367--17942409	3	13.7	3	85	9	59	62	2	0	34	1.08
17942367--17942409	16	2.7	16	92	0	68	62	2	0	34	1.08
17942364--17942408	13	3.2	13	85	14	63	62	2	0	35	1.08
17944199--17944286	42	2.1	42	95	4	160	51	9	19	20	1.74
17953842--17953893	25	2.1	25	82	7	61	30	23	1	44	1.64
17954029--17954054	9	2.9	9	100	0	52	88	0	0	11	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17955942--17955989	16	3.1	16	82	17	73	39	0	8	52	1.32
17955974--17956306	128	2.6	129	82	3	406	40	7	12	39	1.71
17956386--17956448	26	2.5	25	80	12	67	34	3	22	39	1.70
17956632--17956676	21	2.1	21	100	0	90	44	0	0	55	0.99
17957728--17957975	133	1.9	134	88	4	385	32	12	12	41	1.81
17960137--17960171	3	11.7	3	87	0	52	60	0	2	37	1.12
17960133--17960173	12	3.4	12	87	12	66	56	0	2	41	1.13
17962950--17963019	30	2.3	30	87	4	97	32	28	11	27	1.91
17968060--17968389	134	2.5	132	83	5	396	53	7	18	20	1.68
17968382--17968416	18	1.9	18	88	0	52	82	0	11	5	0.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190