genome.fa.s223.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  155  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25113765--25114090	19	16.9	19	78	2	278	40	40	0	18	1.55
25114121--25114192	20	3.6	20	80	0	72	45	31	2	19	1.64
25115198--25115550	178	2.0	177	94	0	616	38	14	20	26	1.91
25116903--25116937	5	6.8	5	93	6	61	60	0	2	37	1.12
25118792--25118819	3	9.3	3	100	0	56	67	0	0	32	0.91
25128922--25129290	86	4.2	84	71	14	248	41	14	11	32	1.81
25129045--25129131	46	1.9	44	90	4	138	40	17	11	31	1.85
25129138--25129290	43	3.5	42	83	6	173	43	13	10	32	1.78
25130289--25130330	18	2.3	18	88	8	59	21	26	0	52	1.47
25141269--25141367	19	5.2	19	65	9	58	19	10	24	46	1.80
25143568--25143618	20	2.7	19	79	8	50	21	1	1	74	1.02
25149555--25149610	27	2.1	26	80	12	60	75	7	3	14	1.16
25150452--25150516	3	23.0	3	84	12	84	61	0	3	35	1.12
25150578--25150662	26	3.3	26	72	9	66	32	25	23	17	1.97
25150651--25150750	52	1.9	52	83	4	130	25	23	28	24	2.00
25151065--25151471	109	3.5	108	74	13	312	47	14	20	18	1.82
25151171--25151471	120	2.5	121	83	3	374	47	12	20	18	1.81
25169356--25169430	15	5.4	14	93	6	109	73	0	0	26	0.84
25169364--25169433	3	24.7	3	91	8	112	71	0	0	28	0.86
25169555--25169618	26	2.5	26	82	9	71	39	26	17	17	1.91
25171577--25171709	49	2.7	50	77	11	139	36	10	14	38	1.80
25173037--25173082	18	2.6	19	80	13	62	73	0	8	17	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25173428--25173559	50	2.7	50	82	3	142	34	9	18	37	1.84
25173990--25174061	20	3.5	20	79	12	76	79	1	16	2	0.93
25174017--25174062	24	1.9	24	86	8	67	76	0	19	4	0.96
25173990--25174061	10	6.9	11	73	17	57	79	1	16	2	0.93
25173990--25174062	27	2.9	23	78	13	65	79	1	16	2	0.92
25174751--25174784	14	2.2	16	90	10	54	79	0	5	14	0.91
25175380--25175762	47	8.2	46	75	7	281	33	12	12	41	1.79
25175387--25175701	139	2.3	140	79	4	332	34	11	12	41	1.80
25175830--25175893	17	3.8	16	82	10	74	79	15	1	3	0.93
25175841--25175890	13	3.9	12	80	19	57	80	18	0	2	0.82
25176704--25176762	27	2.3	25	82	11	66	69	3	13	13	1.31
25183349--25183402	18	2.9	19	72	10	58	62	12	0	24	1.30
25183362--25183418	18	3.1	17	78	14	60	66	8	0	24	1.20
25183381--25183436	20	2.7	21	73	21	55	66	7	1	25	1.27
25183600--25183645	22	2.2	22	84	7	60	8	23	0	67	1.18
25185111--25185176	25	2.7	23	75	15	60	18	7	0	74	1.05
25185132--25185188	15	3.7	15	73	13	53	22	1	0	75	0.90
25187094--25187297	7	31.6	7	65	18	50	43	32	1	22	1.62
25187094--25187207	19	6.0	19	74	17	78	43	32	2	21	1.66
25187175--25187251	19	3.9	21	77	14	67	41	36	0	22	1.54
25187237--25187297	26	2.3	26	77	0	68	45	31	0	22	1.53
25187263--25187355	19	4.8	19	71	7	64	41	27	0	30	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25190475--25190504	2	15.0	2	100	0	60	50	0	0	50	1.00
25191018--25191219	101	2.0	101	98	0	386	37	24	12	24	1.91
25193693--25193762	29	2.4	29	78	0	77	54	5	7	32	1.51
25196315--25196366	3	17.3	3	100	0	104	34	0	0	65	0.93
25196951--25196989	20	2.0	20	89	0	60	30	15	10	43	1.80
25197374--25197407	3	11.3	3	100	0	68	32	0	0	67	0.91
25199408--25199497	29	3.1	28	82	14	119	58	0	1	40	1.05
25199459--25199532	37	1.9	40	84	13	102	55	0	2	41	1.14
25199464--25199510	20	2.3	20	85	10	60	53	0	0	46	1.00
25202001--25202030	10	3.0	10	95	0	51	30	16	20	33	1.94
25206338--25206379	11	4.0	11	78	9	52	50	0	2	47	1.14
25206333--25206379	13	3.5	13	82	11	60	46	2	2	48	1.25
25208822--25208873	6	8.7	6	97	0	77	40	0	9	50	1.35
25209262--25209288	2	13.5	2	100	0	54	48	0	0	51	1.00
25217678--25217725	22	2.2	21	78	10	53	77	10	8	4	1.12
25217846--25217891	20	2.3	20	88	0	65	78	4	13	4	1.05
25217861--25217891	10	3.1	10	90	0	53	83	3	12	0	0.75
25218684--25218739	20	3.2	16	76	16	58	80	7	12	0	0.90
25218840--25218873	15	2.2	16	90	10	54	64	0	0	35	0.94
25219004--25219038	18	1.9	18	94	0	61	82	5	5	5	0.93
25220666--25220699	12	2.8	12	86	4	50	82	5	0	11	0.83
25221468--25221506	3	13.0	3	100	0	78	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25225165--25225203	3	13.0	3	100	0	78	33	0	0	66	0.92
25226791--25227127	145	2.3	144	79	4	356	41	11	12	33	1.80
25227539--25227593	8	6.5	8	78	12	56	9	1	3	85	0.79
25227546--25227608	12	5.5	11	75	17	56	7	3	4	84	0.87
25227539--25227608	35	2.0	36	86	8	99	8	2	4	84	0.85
25227558--25227637	8	10.2	8	73	17	53	7	2	11	78	1.04
25227604--25227647	8	5.6	8	83	2	54	4	0	18	77	0.94
25227555--25227645	47	2.0	46	84	6	121	6	2	12	79	1.02
25227990--25228171	70	2.6	70	80	0	193	43	14	23	18	1.87
25228129--25228230	36	2.9	34	76	11	98	50	8	19	21	1.75
25228080--25228592	211	2.4	211	82	4	527	45	12	21	21	1.84
25228243--25228401	70	2.3	71	75	9	155	47	13	19	19	1.81
25228363--25228468	35	3.0	36	74	19	105	47	12	19	20	1.82
25228198--25228676	211	2.3	211	78	4	484	45	12	20	21	1.83
25228708--25228863	70	2.2	71	82	7	187	41	12	23	22	1.88
25228340--25228880	281	1.9	281	80	3	622	44	12	21	21	1.85
25228832--25228986	34	4.5	35	73	4	91	52	10	18	18	1.74
25229063--25229134	36	2.0	37	86	2	101	54	8	16	20	1.68
25229215--25229305	37	2.5	37	87	5	125	54	14	15	15	1.71
25229290--25229565	109	2.5	110	81	9	307	52	12	18	16	1.74
25229369--25229576	73	2.9	71	72	9	177	54	12	17	15	1.71
25229290--25229556	36	7.4	36	74	7	202	51	13	18	16	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25229534--25229632	37	2.7	37	76	6	103	56	14	14	15	1.68
25229364--25229595	109	2.1	109	84	5	292	53	12	17	15	1.72
25229713--25229808	37	2.6	36	77	8	95	53	15	15	15	1.74
25230041--25230200	36	4.5	36	74	7	112	56	13	15	15	1.68
25230426--25230559	38	3.6	38	79	7	130	53	11	15	18	1.72
25242372--25242784	146	2.8	144	83	6	496	39	13	15	31	1.86
25245487--25245511	12	2.1	12	100	0	50	8	8	8	76	1.18
25253058--25253127	29	2.4	28	79	6	77	32	21	17	28	1.96
25255449--25255528	29	2.7	30	75	11	76	41	5	5	48	1.46
25256509--25256567	17	3.6	17	71	15	52	49	5	0	45	1.24
25264222--25264247	13	2.0	13	100	0	52	46	30	0	23	1.53
25270998--25271028	5	6.2	5	92	0	53	45	0	16	38	1.47
25271814--25271889	8	9.0	8	72	16	64	77	0	19	2	0.88
25271815--25271898	9	8.7	9	73	19	62	79	0	16	3	0.86
25271814--25271859	19	2.5	18	83	16	51	76	0	21	2	0.90
25271815--25271871	22	2.7	22	82	12	66	78	0	17	3	0.88
25271816--25271869	14	3.8	14	78	9	56	77	0	18	3	0.91
25271815--25271897	17	4.8	17	72	14	64	79	0	16	3	0.87
25272612--25272650	19	2.0	21	90	10	64	74	2	0	23	0.94
25272779--25272817	18	2.1	18	85	4	51	38	0	0	61	0.96
25274163--25274215	6	8.8	6	93	0	79	15	11	1	71	1.22
25274163--25274227	18	3.6	18	87	0	85	12	10	4	72	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25274200--25274244	6	7.7	6	85	5	56	2	13	11	73	1.19
25274206--25274238	11	2.8	12	90	9	59	0	9	15	75	1.03
25276119--25276143	12	2.1	12	100	0	50	68	8	0	24	1.16
25283686--25283765	24	3.5	24	71	20	73	52	10	5	32	1.56
25283748--25283788	3	13.7	3	89	0	64	65	4	0	29	1.13
25283834--25284195	32	11.6	31	64	27	128	54	11	5	29	1.57
25283853--25283914	20	3.0	20	72	11	63	56	9	3	30	1.47
25283841--25283999	71	2.2	71	95	0	282	54	11	5	28	1.59
25283841--25284021	71	2.5	69	84	8	211	54	11	5	28	1.58
25284017--25284186	56	3.1	56	84	4	157	54	11	4	28	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190