genome.fa.s223.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  173  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28658895--28659082	53	3.4	53	72	14	139	54	7	10	27	1.62
28660311--28660511	46	4.4	46	84	6	264	39	7	13	39	1.73
28660311--28660514	91	2.2	92	86	4	288	39	7	13	40	1.72
28660899--28661242	41	8.4	41	82	3	331	20	13	19	46	1.83
28660899--28661207	123	2.5	124	87	3	412	21	13	19	45	1.84
28660906--28661242	123	2.7	122	83	5	405	19	13	19	47	1.82
28660899--28661242	82	4.2	82	80	6	385	20	13	19	46	1.83
28661151--28661314	89	1.8	89	84	5	224	20	14	17	47	1.82
28661191--28661291	48	2.1	48	90	3	168	18	9	16	54	1.69
28661193--28661326	48	3.0	44	81	9	114	21	11	17	49	1.78
28661599--28661624	3	8.7	3	100	0	52	30	0	0	69	0.89
28661532--28661624	18	5.3	17	71	18	59	27	3	2	66	1.18
28661928--28661957	12	2.4	13	94	5	53	33	0	6	60	1.23
28662630--28662660	8	3.8	8	95	4	53	74	0	0	25	0.82
28665969--28666023	28	2.0	28	100	0	110	47	3	9	40	1.53
28676220--28676268	24	2.0	24	84	0	62	44	4	6	44	1.47
28679889--28679963	39	1.9	39	81	10	91	48	0	0	52	1.00
28679943--28679986	22	1.9	24	86	9	65	52	0	0	47	1.00
28680172--28680208	2	19.5	2	86	10	51	43	0	0	56	0.99
28680695--28680989	147	2.0	147	97	0	554	20	21	28	29	1.98
28681749--28681790	21	2.0	22	85	4	59	59	0	2	38	1.10
28686402--28686447	21	2.2	21	81	14	51	30	2	8	58	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28687328--28687363	2	18.0	2	88	0	54	44	0	2	52	1.15
28689028--28689059	13	2.5	13	100	0	64	43	9	9	37	1.69
28693634--28693659	12	2.2	12	100	0	52	50	26	23	0	1.50
28698031--28698066	16	2.2	16	90	0	54	41	11	13	33	1.80
28698660--28698722	21	3.0	21	90	2	92	61	0	0	38	0.96
28698887--28698970	24	3.4	25	83	11	93	50	2	1	46	1.22
28699423--28699488	30	2.2	30	94	0	114	25	24	19	30	1.98
28703802--28703879	24	3.2	24	87	8	115	46	1	0	52	1.08
28703802--28703901	49	2.0	49	81	13	114	51	1	0	48	1.07
28708215--28708245	16	1.9	16	93	0	53	35	9	12	41	1.76
28708833--28708895	21	3.0	20	79	6	63	58	1	1	38	1.17
28709076--28709163	24	3.6	24	80	13	83	46	3	1	48	1.26
28715801--28715840	16	2.5	15	84	11	53	42	0	7	50	1.30
28716190--28716235	12	3.8	13	77	13	53	60	2	0	36	1.09
28716303--28716354	12	4.2	12	76	11	52	55	0	0	44	0.99
28716290--28716380	30	3.0	31	81	12	91	49	1	1	48	1.15
28716244--28716369	58	2.0	58	79	15	128	50	0	0	48	1.06
28716316--28716380	32	2.1	30	85	5	85	53	1	1	43	1.19
28716509--28716582	21	3.6	21	81	12	66	55	0	8	36	1.30
28716519--28716578	21	2.9	20	87	7	84	53	0	8	38	1.31
28716758--28716844	36	2.4	35	90	3	129	42	2	1	54	1.20
28717602--28717648	18	2.6	18	80	6	51	31	12	2	53	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28717672--28717701	16	1.9	15	93	6	51	80	3	6	10	1.01
28717889--28718117	111	2.1	110	83	7	293	50	2	12	34	1.54
28719402--28719461	22	2.7	22	73	23	63	55	0	1	43	1.10
28719400--28719451	12	4.2	12	80	11	61	57	0	1	40	1.10
28719400--28719452	17	2.8	20	75	18	60	58	0	1	39	1.09
28724618--28724674	21	2.7	21	89	8	80	52	0	0	47	1.00
28724618--28724674	22	2.6	22	91	8	91	52	0	0	47	1.00
28724647--28724703	30	1.9	30	85	0	78	52	1	0	45	1.11
28726415--28726453	17	2.2	18	90	4	62	41	0	5	53	1.23
28731278--28731350	29	2.4	29	84	4	92	45	0	6	47	1.29
28738814--28738872	27	2.2	27	93	6	102	28	10	15	45	1.78
28745029--28745058	7	4.3	7	91	0	51	70	0	0	30	0.88
28745406--28745482	32	2.6	29	78	15	84	54	1	1	42	1.16
28745415--28745483	32	2.2	32	89	5	104	52	1	0	46	1.09
28745886--28745923	18	2.1	18	90	0	58	65	0	5	28	1.14
28747423--28747468	24	2.0	23	86	4	65	47	0	2	50	1.13
28748226--28748288	29	2.2	30	78	18	71	50	0	1	47	1.10
28753468--28753542	38	2.0	38	89	0	114	41	14	13	30	1.84
28759466--28759504	20	2.0	20	94	0	69	33	30	5	30	1.79
28762576--28762891	156	2.0	156	96	0	587	37	16	18	27	1.92
28763440--28763489	2	25.0	2	83	0	64	42	8	0	50	1.32
28763795--28763862	34	2.0	34	85	5	93	48	14	2	33	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28765269--28765311	19	2.3	19	87	0	59	60	6	0	32	1.23
28765288--28765331	22	2.0	21	91	4	70	59	6	0	34	1.24
28766873--28766935	30	2.1	30	93	0	108	39	11	7	41	1.70
28768041--28768075	14	2.4	15	85	4	54	62	8	0	28	1.24
28768067--28768105	20	2.0	20	100	0	78	61	23	5	10	1.48
28768477--28768518	21	2.0	21	90	9	68	66	0	9	23	1.21
28773153--28773179	14	1.9	14	100	0	54	18	0	0	81	0.69
28774471--28774583	32	3.4	32	75	16	97	52	0	0	46	1.13
28774490--28774612	32	3.7	33	74	18	112	52	0	0	46	1.12
28774490--28774612	16	7.4	17	75	16	89	52	0	0	46	1.12
28774616--28774730	15	7.4	15	71	18	83	41	1	0	55	1.16
28774617--28774770	23	6.4	23	75	15	134	41	2	1	54	1.22
28774636--28774770	18	7.8	18	70	17	81	41	2	1	54	1.25
28774616--28774730	30	3.7	31	71	19	96	41	1	0	55	1.16
28780002--28780386	99	3.9	99	79	4	366	19	18	23	38	1.93
28783620--28783678	18	3.4	18	63	13	52	22	27	25	25	2.00
28783622--28783686	33	2.0	33	84	0	85	21	26	26	26	2.00
28783670--28783760	33	2.7	34	67	3	78	27	15	21	35	1.94
28783777--28784002	33	6.8	33	70	6	107	19	18	26	35	1.95
28783928--28783975	15	3.0	15	79	11	51	22	20	29	27	1.99
28793820--28793846	3	9.0	3	100	0	54	66	0	0	33	0.92
28795354--28795418	33	2.0	33	84	0	85	15	29	30	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28798703--28798840	58	2.4	59	81	10	146	54	5	7	33	1.50
28798763--28798909	74	2.1	66	85	10	195	56	6	6	31	1.48
28802581--28802629	21	2.3	21	79	6	55	20	2	4	73	1.10
28807207--28807720	199	2.6	199	77	8	499	29	14	12	43	1.82
28809926--28809984	28	2.1	28	87	3	84	25	11	15	47	1.79
28811232--28811291	22	2.7	23	78	2	68	30	10	25	35	1.88
28813413--28813447	12	3.0	12	91	4	54	28	0	2	68	1.04
28816040--28816074	12	2.9	12	91	0	52	40	0	0	60	0.97
28821394--28821442	22	2.1	23	81	11	64	30	16	16	36	1.91
28822869--28822945	40	1.9	40	89	0	118	48	5	7	38	1.55
28823621--28823696	30	2.8	26	74	14	89	50	13	14	22	1.77
28834807--28834846	3	13.3	3	100	0	80	32	0	0	67	0.91
28835750--28835789	5	7.8	5	83	5	53	2	0	75	22	0.93
28837244--28837582	172	2.0	172	92	2	574	26	12	12	48	1.76
28842426--28842485	30	2.0	30	100	0	120	40	16	20	23	1.91
28850040--28850069	10	3.1	10	95	4	53	36	0	0	63	0.95
28850914--28851231	157	2.0	157	98	0	609	32	13	23	31	1.93
28854221--28854245	8	3.1	8	100	0	50	88	0	12	0	0.53
28868077--28868111	12	2.9	12	95	0	61	42	0	25	31	1.55
28871997--28872048	12	4.3	12	86	13	72	67	0	0	32	0.91
28871994--28872075	24	3.9	21	72	13	69	63	0	0	36	0.95
28871996--28872048	24	2.2	24	93	0	88	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28871992--28872056	12	5.4	12	77	15	64	66	0	0	33	0.92
28873799--28873873	36	2.1	36	82	0	87	25	25	26	22	2.00
28877252--28877380	24	4.9	26	73	17	99	40	0	3	56	1.15
28877251--28877366	19	6.1	19	70	24	66	41	0	3	55	1.17
28877280--28877367	31	3.1	29	77	19	105	40	0	3	55	1.16
28877294--28877390	24	3.9	24	76	10	79	39	1	2	57	1.17
28877293--28877413	47	2.5	50	72	18	114	40	0	1	57	1.15
28878189--28878214	2	13.0	2	100	0	52	0	50	0	50	1.00
28881872--28881906	2	17.5	2	100	0	70	48	0	0	51	1.00
28882568--28882613	22	2.1	22	84	8	58	45	2	0	52	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190