genome.fa.s223.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  97  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15313345--15314983	896	1.8	899	87	1	2448	26	24	23	26	2.00
15314957--15315009	26	2.0	26	85	0	70	26	26	18	28	1.98
15314213--15315724	741	2.0	739	88	2	2273	27	24	22	25	2.00
15317617--15317669	26	2.0	26	96	0	97	28	26	18	26	1.98
15314933--15320097	883	5.8	882	86	4	6478	26	24	23	25	2.00
15320125--15320177	26	2.0	26	96	0	97	30	24	16	28	1.97
15320870--15320922	26	2.0	26	92	0	88	28	24	18	28	1.98
15319229--15321419	733	3.0	718	77	10	2413	26	23	23	26	2.00
15321747--15321799	26	2.0	26	92	0	88	26	24	20	28	1.99
15322642--15322694	26	2.0	26	96	0	97	26	24	20	28	1.99
15323531--15323581	26	2.0	26	92	0	84	27	25	17	29	1.98
15320701--15324302	889	4.0	893	87	3	4962	25	24	23	25	2.00
15323557--15325046	717	2.1	716	87	2	2170	26	23	23	27	2.00
15325150--15325202	26	2.0	26	85	0	70	28	20	22	28	1.99
15326052--15326099	25	1.9	25	91	0	78	29	25	16	29	1.97
15327845--15327896	26	2.0	25	88	3	77	28	25	17	28	1.97
15329642--15329691	26	2.0	25	88	4	73	28	26	18	28	1.98
15324274--15331412	905	7.9	900	85	4	8664	25	24	24	25	2.00
15330543--15330595	26	2.0	26	92	7	90	26	26	20	26	1.99
15332884--15332936	26	2.0	26	96	0	97	24	16	28	30	1.97
15331410--15333904	903	2.8	897	87	2	3455	25	23	23	26	2.00
15333787--15333839	26	2.0	26	85	0	70	30	16	24	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15335464--15335517	26	2.1	26	85	0	72	35	22	20	22	1.96
15337259--15337283	12	2.1	12	100	0	50	44	16	24	16	1.86
15337008--15337515	257	2.0	257	87	0	730	24	31	24	19	1.98
15337469--15337521	26	2.0	26	92	0	88	28	18	24	28	1.98
15338310--15338362	26	2.0	26	92	0	88	28	20	22	28	1.99
15339217--15339269	26	2.0	26	89	7	81	26	18	26	28	1.98
15338241--15342879	902	5.2	899	86	3	6181	25	24	24	25	2.00
15340116--15340168	26	2.0	26	92	0	88	28	22	24	24	2.00
15341019--15341071	26	2.0	26	96	0	97	26	22	26	24	2.00
15341920--15341972	26	2.0	26	88	0	79	28	20	24	26	1.99
15342796--15342848	26	2.0	26	88	0	79	30	18	24	26	1.98
15343538--15343590	26	2.0	26	92	0	88	28	20	22	28	1.99
15344411--15344463	26	2.0	26	92	0	88	28	22	24	24	2.00
15342822--15347792	886	5.7	886	83	5	5750	26	23	24	25	2.00
15347034--15347086	26	2.0	26	92	0	88	30	20	24	24	1.99
15349855--15349907	26	2.0	26	88	0	79	30	18	22	28	1.98
15351657--15351709	26	2.0	26	92	0	88	28	18	24	28	1.98
15348964--15354416	903	6.0	902	89	1	7362	25	23	25	25	2.00
15353462--15353514	26	2.0	26	96	0	97	26	18	26	28	1.98
15354364--15354464	26	3.9	26	97	0	193	27	19	25	26	1.99
15354627--15356603	745	2.7	720	89	5	3068	26	23	24	26	2.00
15355802--15355854	26	2.0	26	96	0	97	28	20	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15358130--15358182	26	2.0	26	92	0	88	28	18	24	28	1.98
15359191--15359243	26	2.0	26	100	0	106	26	20	26	26	1.99
15361613--15361665	26	2.0	26	92	0	88	22	20	28	28	1.99
15362508--15362560	26	2.0	26	100	0	106	26	20	26	26	1.99
15360891--15364378	896	3.9	900	87	2	4822	25	23	24	25	2.00
15364302--15364354	26	2.0	26	96	0	97	28	20	26	24	1.99
15365925--15365977	26	2.0	26	96	0	97	28	20	24	26	1.99
15366797--15366849	26	2.0	26	96	0	97	26	24	20	28	1.99
15367699--15367751	26	2.0	26	96	0	97	26	24	20	28	1.99
15368583--15368635	26	2.0	26	92	0	88	28	22	20	28	1.99
15370773--15372233	710	2.0	719	87	2	2120	26	23	23	26	2.00
15371480--15374007	904	2.8	900	88	1	3649	25	24	24	25	2.00
15373648--15374319	355	1.9	355	88	1	1015	32	23	18	24	1.97
15374004--15376506	902	2.8	886	86	5	3404	25	24	24	25	2.00
15377993--15378042	26	1.9	26	95	0	91	26	28	20	26	1.99
15376504--15379788	903	3.7	892	84	5	4089	25	24	23	25	2.00
15382370--15382395	13	2.0	13	100	0	52	23	23	30	23	1.99
15383941--15383993	26	2.0	26	85	0	70	24	20	22	32	1.98
15384844--15384896	26	2.0	26	88	0	79	26	24	20	28	1.99
15383075--15385766	891	3.0	896	87	3	3821	25	25	23	25	2.00
15385810--15385835	13	2.0	13	100	0	52	23	23	30	23	1.99
15386506--15386558	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15388296--15388348	26	2.0	26	88	0	79	26	24	20	28	1.99
15385816--15391926	903	6.8	898	86	3	8204	25	24	23	25	2.00
15389202--15389251	26	1.9	26	91	0	82	26	20	22	32	1.98
15390100--15390152	26	2.0	26	96	0	97	28	26	18	26	1.98
15391874--15391952	26	3.0	26	92	0	140	26	25	18	29	1.98
15393343--15393395	26	2.0	26	92	0	88	28	24	18	28	1.98
15394238--15394290	26	2.0	26	89	7	81	32	26	16	24	1.97
15392470--15401322	895	9.8	895	77	9	7259	25	24	24	25	2.00
15397884--15397936	26	2.0	26	92	0	88	28	22	20	28	1.99
15396919--15401322	894	4.9	894	88	2	6285	25	25	24	25	2.00
15399677--15399729	26	2.0	26	96	0	97	28	26	18	26	1.98
15400916--15401726	404	2.0	404	91	0	1318	30	23	19	27	1.98
15402551--15404418	880	2.1	878	97	0	3505	23	25	25	25	2.00
15404666--15404709	11	4.0	11	90	0	70	20	34	34	11	1.88
15405451--15405505	26	2.1	26	96	0	101	29	23	18	29	1.98
15404297--15407248	890	3.3	874	81	7	3147	24	25	24	24	2.00
15407127--15407406	145	1.9	147	86	2	395	16	33	28	21	1.95
15408253--15408305	26	2.0	26	100	0	106	26	26	20	26	1.99
15408879--15408940	26	2.5	26	92	5	101	29	24	19	27	1.98
15409751--15409803	26	2.0	26	96	0	97	26	28	20	24	1.99
15408400--15410508	875	2.4	865	86	5	2821	27	24	22	25	2.00
15411601--15411653	26	2.0	26	88	0	79	28	22	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15411595--15414094	901	2.8	902	89	1	3710	26	24	23	25	2.00
15414066--15414124	29	2.0	29	100	0	118	10	40	22	27	1.85
15414440--15414489	26	1.9	26	95	0	91	28	22	26	24	1.99
15416215--15416267	26	2.0	26	96	0	97	26	18	26	28	1.98
15414705--15423445	904	9.8	901	85	4	10885	25	23	24	26	2.00
15418011--15418063	26	2.0	26	88	0	79	30	16	24	28	1.97
15419799--15419851	26	2.0	26	92	0	88	26	20	22	30	1.98
15421578--15421630	26	2.0	26	92	0	88	30	20	22	26	1.98
15423371--15423422	25	2.0	26	85	3	70	26	17	23	32	1.96
15424957--15425009	26	2.0	26	85	0	70	26	16	26	30	1.97
15425830--15425882	26	2.0	26	92	0	88	28	18	24	28	1.98
15426697--15426755	26	2.3	26	88	5	86	25	20	27	27	1.99
15428503--15428552	26	1.9	26	95	0	91	32	18	22	28	1.97
15431146--15431198	26	2.0	26	96	0	97	28	20	24	26	1.99
15432023--15432075	26	2.0	26	96	0	97	28	20	24	26	1.99
15433801--15433859	26	2.4	25	86	8	84	23	20	28	27	1.99
15423397--15434737	902	12.8	894	84	6	13692	25	23	25	25	2.00
15434759--15438097	894	3.8	875	85	5	4112	25	24	24	26	2.00
15437174--15437226	26	2.0	26	96	0	97	26	18	26	28	1.98
15438909--15438961	26	2.0	26	85	7	72	24	22	24	28	2.00
15439814--15439866	26	2.0	26	96	0	97	30	18	22	28	1.98
15440703--15440755	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15438187--15443822	874	6.4	889	86	4	7116	25	23	24	25	2.00
15441582--15441632	26	2.0	26	100	0	102	27	17	27	27	1.98
15444899--15444975	26	3.0	26	94	3	131	27	24	19	28	1.99
15445834--15445889	26	2.2	26	100	0	112	28	25	19	26	1.99
15444924--15450707	907	6.4	902	87	2	7863	25	24	24	25	2.00
15448540--15448592	26	2.0	26	85	0	70	32	24	15	28	1.95
15449432--15449484	26	2.0	26	92	0	88	30	24	18	26	1.98
15451984--15452034	26	2.0	26	96	0	93	27	23	15	33	1.95
15452880--15452932	26	2.0	26	88	0	79	30	24	16	28	1.97
15451101--15457331	863	7.0	890	86	5	7569	25	24	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190