genome.fa.s223.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  90  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14329304--14332398	922	3.4	896	83	7	3663	25	24	25	25	2.00
14331974--14332026	26	2.0	26	92	0	88	30	20	24	24	1.99
14331939--14332860	462	2.0	462	83	3	1176	24	23	26	25	2.00
14333331--14333381	26	2.0	26	92	0	84	31	19	25	23	1.98
14334207--14334259	26	2.0	26	96	0	97	26	18	26	28	1.98
14332399--14339704	873	8.3	877	78	10	6372	25	24	24	25	2.00
14335978--14339635	875	4.2	895	75	13	2687	25	24	24	25	2.00
14341264--14341316	26	2.0	26	96	0	97	26	24	20	28	1.99
14341985--14342032	25	1.9	25	95	0	87	27	20	22	29	1.99
14342868--14342920	26	2.0	26	92	0	88	28	24	18	28	1.98
14343167--14344134	492	2.0	496	89	2	1491	30	22	19	27	1.98
14344262--14344314	26	2.0	26	96	0	97	28	26	20	24	1.99
14345135--14345190	26	2.2	26	100	0	112	28	25	19	26	1.99
14346031--14346083	26	2.0	26	88	0	79	30	24	16	28	1.97
14345097--14350387	904	6.0	897	81	8	6102	25	24	24	25	2.00
14346931--14346983	26	2.0	26	100	0	106	30	26	16	26	1.97
14343663--14350383	899	7.7	870	80	10	6716	26	24	24	25	2.00
14349516--14349568	26	2.0	26	96	0	97	28	26	18	26	1.98
14351267--14351319	26	2.0	26	96	0	97	28	18	26	26	1.98
14352137--14352189	26	2.0	26	88	0	79	24	16	28	30	1.97
14353029--14353080	26	2.0	26	92	3	88	26	19	25	28	1.98
14352090--14355124	899	3.4	899	86	2	3969	24	24	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14356139--14356191	26	2.0	26	92	0	88	26	16	26	30	1.97
14357023--14357075	26	2.0	26	96	0	97	28	20	24	26	1.99
14355427--14357931	877	2.9	872	86	5	3365	25	23	24	26	2.00
14358317--14358369	26	2.0	26	100	0	106	26	20	26	26	1.99
14361399--14361451	26	2.0	26	92	0	88	26	16	28	28	1.97
14359776--14362324	900	2.8	898	89	1	3696	24	23	24	26	2.00
14361635--14363058	723	2.0	723	89	1	2217	25	22	24	27	2.00
14364604--14364656	26	2.0	26	96	0	97	28	20	24	26	1.99
14365499--14365551	26	2.0	26	89	7	81	26	18	26	28	1.98
14365665--14365717	26	2.0	26	92	0	88	26	20	22	30	1.98
14367423--14367475	26	2.0	26	92	0	88	28	22	24	24	2.00
14365638--14367715	872	2.4	860	82	6	2543	25	24	25	25	2.00
14367512--14367817	166	1.8	167	83	4	413	24	29	27	18	1.98
14370271--14370323	26	2.0	26	92	0	88	28	22	22	26	1.99
14367607--14380554	902	14.5	902	85	3	15887	25	23	24	25	2.00
14371171--14371222	26	2.0	26	100	0	104	30	19	26	23	1.98
14373841--14373893	26	2.0	26	96	0	97	26	22	24	26	2.00
14374743--14374795	26	2.0	26	88	0	79	28	15	24	32	1.95
14375648--14375701	26	2.1	26	89	0	81	27	14	22	35	1.93
14376549--14376601	26	2.0	26	96	0	97	26	22	26	24	2.00
14377455--14377507	26	2.0	26	92	0	88	26	16	26	30	1.97
14372070--14380554	894	9.5	895	85	3	10719	25	23	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14378350--14378399	26	1.9	26	100	0	100	28	16	24	32	1.96
14381536--14381588	26	2.0	26	96	0	97	26	18	26	28	1.98
14382300--14385620	863	3.8	867	83	7	4044	25	24	25	24	2.00
14385346--14385398	26	2.0	26	88	0	79	32	22	18	26	1.97
14382300--14385620	864	3.8	866	82	7	3948	25	24	25	24	2.00
14386086--14386138	26	2.0	26	92	0	88	30	20	22	26	1.98
14387018--14387067	26	1.9	26	88	8	75	34	24	18	24	1.96
14386282--14388346	906	2.3	895	87	3	2990	25	23	25	26	2.00
14387922--14387974	26	2.0	26	92	0	88	28	18	26	26	1.98
14387887--14388814	461	2.0	461	84	3	1227	24	24	27	24	2.00
14389274--14389326	26	2.0	26	100	0	106	26	20	26	26	1.99
14390171--14390223	26	2.0	26	100	0	106	26	20	26	26	1.99
14391941--14391993	26	2.0	26	92	0	88	28	18	24	28	1.98
14392833--14392884	26	2.0	26	100	0	104	26	15	26	30	1.96
14393737--14393788	26	2.0	26	92	0	86	28	17	25	28	1.97
14394635--14394687	26	2.0	26	96	0	97	26	18	26	28	1.98
14388532--14396438	902	8.9	875	83	6	9294	25	23	24	25	2.00
14397721--14397772	26	2.0	26	88	0	77	28	15	25	30	1.96
14397417--14399634	903	2.4	904	86	2	3033	25	24	24	25	2.00
14399528--14399580	26	2.0	26	89	7	81	28	16	24	30	1.97
14402594--14402646	26	2.0	26	85	0	70	28	22	24	24	2.00
14403483--14403534	25	2.0	26	96	3	97	26	21	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14404383--14404435	26	2.0	26	96	0	97	28	20	24	26	1.99
14405272--14405324	26	2.0	26	88	0	79	28	20	22	28	1.99
14401722--14417743	903	18.0	888	84	6	19097	25	24	25	25	2.00
14406172--14406224	26	2.0	26	92	0	88	26	18	24	30	1.98
14407013--14407065	26	2.0	26	88	0	79	28	20	22	28	1.99
14407906--14407958	26	2.0	26	96	0	97	24	20	26	28	1.99
14406960--14433158	903	28.9	902	73	12	15181	25	23	25	25	2.00
14410584--14410636	26	2.0	26	96	0	97	28	20	24	26	1.99
14413264--14413319	26	2.2	26	93	0	94	28	16	25	30	1.96
14413693--14413733	19	2.1	20	95	4	75	29	17	4	48	1.67
14415037--14415089	26	2.0	26	96	0	97	26	18	26	28	1.98
14413728--14417743	904	4.5	898	86	4	5412	25	24	24	25	2.00
14416829--14416882	26	2.1	26	89	0	81	27	16	25	29	1.97
14401722--14417743	888	18.0	890	84	6	19290	25	24	25	25	2.00
14418707--14418737	12	2.6	12	100	0	62	38	19	29	12	1.89
14418921--14418970	26	1.9	26	92	8	84	34	20	22	24	1.97
14419614--14419663	26	1.9	26	100	0	100	28	20	28	24	1.99
14420362--14433159	870	14.6	869	84	5	15226	25	23	24	26	2.00
14422759--14422811	26	2.0	26	96	0	97	28	20	24	26	1.99
14423602--14423654	26	2.0	26	96	0	97	26	18	26	28	1.98
14425358--14425408	26	2.0	26	92	0	84	27	17	23	31	1.97
14427996--14428048	26	2.0	26	92	0	88	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14429755--14429807	26	2.0	26	100	0	106	26	20	26	26	1.99
14430645--14430696	26	2.0	25	96	3	95	26	17	26	28	1.97
14431059--14431116	27	2.2	27	81	3	64	22	6	10	60	1.53
14434985--14438420	909	3.8	902	85	3	4569	25	23	24	26	2.00
14437610--14439221	802	2.0	807	87	2	2308	25	22	24	27	2.00
14438482--14440262	871	2.1	868	86	3	2475	25	23	24	26	2.00
14440233--14440283	26	2.0	26	92	0	84	29	21	23	25	1.99
14441926--14441978	26	2.0	26	82	7	63	30	18	24	26	1.98
14442803--14442855	26	2.0	26	96	0	97	28	20	24	26	1.99
14444569--14444621	26	2.0	26	96	0	97	26	20	24	28	1.99
14440487--14447095	908	7.4	884	84	4	7870	25	23	24	25	2.00
14446318--14447929	815	2.0	812	85	1	2212	25	22	24	26	2.00
14448946--14448996	26	2.0	26	92	7	86	31	19	21	27	1.97
14449894--14449943	26	1.9	26	95	0	91	30	14	28	28	1.95
14448713--14450602	948	2.0	941	88	2	2781	25	23	25	25	2.00
14450769--14450821	26	2.0	26	88	0	79	30	22	22	24	1.99
14451670--14451720	26	2.0	26	88	0	75	29	17	25	27	1.98
14447133--14457441	900	11.5	899	83	5	12266	25	24	24	25	2.00
14452556--14452608	26	2.0	26	96	0	97	26	20	24	28	1.99
14453422--14453474	26	2.0	26	88	0	79	28	20	26	24	1.99
14455223--14455275	26	2.0	26	96	0	97	26	18	26	28	1.98
14456118--14456170	26	2.0	26	92	0	88	28	20	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14453331--14457441	895	4.6	895	83	4	4897	25	24	24	25	2.00
14457026--14457078	26	2.0	26	88	0	79	30	18	22	28	1.98
14457543--14457595	26	2.0	26	92	0	88	30	20	20	28	1.98
14458445--14458497	26	2.0	26	92	0	88	28	16	26	28	1.97
14459971--14460003	12	2.8	12	95	0	57	36	18	33	12	1.88
14461055--14461107	26	2.0	26	92	0	88	26	20	22	30	1.98
14459461--14466248	891	7.7	886	84	6	7853	25	23	24	26	2.00
14461947--14461997	26	2.0	26	100	0	102	27	15	29	27	1.96
14462820--14462878	26	2.3	26	88	5	95	25	18	27	28	1.98
14463713--14463765	26	2.0	26	88	0	79	26	15	26	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190