genome.fa.s223.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  47  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7896093--7896155	32	2.0	32	90	0	99	55	11	3	30	1.50
7896182--7896298	22	5.9	20	67	25	61	52	10	6	29	1.61
7896191--7896233	23	1.9	23	90	4	70	53	11	6	27	1.63
7896196--7896329	32	4.4	32	72	19	99	53	11	7	27	1.63
7896143--7896321	55	3.3	55	85	3	238	53	10	7	29	1.61
7896213--7896330	32	4.0	31	74	20	108	54	11	6	27	1.61
7896268--7896350	32	2.6	32	86	1	112	51	8	8	31	1.62
7896339--7896447	24	4.6	24	75	11	107	54	8	4	33	1.51
7896423--7896468	20	2.2	20	88	3	65	56	10	2	30	1.46
7896375--7896498	45	2.7	46	86	6	153	53	10	2	33	1.48
7896409--7896493	24	3.7	23	75	16	86	54	12	2	30	1.51
7897131--7897177	20	2.4	20	82	10	53	70	4	0	25	1.05
7898614--7898649	16	2.2	17	90	5	56	80	2	0	16	0.83
7905491--7905763	108	2.5	108	79	4	291	32	10	18	38	1.84
7905863--7905946	36	2.4	35	82	5	100	23	17	17	40	1.91
7906226--7906330	46	2.3	46	86	3	149	30	8	17	43	1.78
7907692--7907745	6	9.5	6	74	11	51	16	1	3	77	1.00
7907692--7907730	18	2.3	17	91	8	62	12	0	5	82	0.83
7907692--7907745	17	3.2	17	82	17	60	16	1	3	77	1.00
7907691--7907756	28	2.3	29	81	2	80	18	4	3	74	1.12
7907757--7907816	29	2.1	27	81	9	66	45	1	1	51	1.21
7911163--7911208	23	2.0	24	91	4	76	39	8	15	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7911875--7912324	227	2.0	227	91	0	738	35	3	26	35	1.72
7915532--7915581	12	3.9	12	84	7	55	54	0	6	40	1.25
7916443--7916472	10	2.9	10	95	5	51	86	0	13	0	0.57
7917730--7917760	2	15.5	2	100	0	62	51	0	0	48	1.00
7918230--7918266	19	1.9	19	88	0	56	48	0	5	45	1.25
7919753--7919786	6	5.7	6	96	0	59	35	38	11	14	1.83
7919751--7919793	18	2.4	18	80	0	59	37	39	11	11	1.78
7920093--7920239	52	2.8	51	82	8	188	43	5	20	30	1.74
7922826--7922864	19	2.1	19	85	0	51	43	2	0	53	1.14
7923216--7923249	17	2.0	17	100	0	68	41	5	17	35	1.74
7925214--7925257	22	2.0	23	82	13	56	20	0	9	70	1.14
7926061--7926109	24	2.0	25	84	4	64	18	2	6	73	1.14
7926110--7926143	17	2.0	17	88	0	50	8	11	11	67	1.42
7926346--7926383	15	2.4	16	91	4	60	76	2	0	21	0.91
7930543--7930571	13	2.3	13	94	5	51	79	3	17	0	0.87
7930965--7931011	16	2.9	16	76	17	53	70	0	21	8	1.14
7930966--7931002	8	4.5	8	93	3	56	72	0	16	10	1.10
7932861--7933133	42	6.5	42	75	7	216	26	12	16	44	1.83
7933063--7933156	42	2.2	43	83	7	113	28	12	19	39	1.88
7933451--7933484	13	2.4	15	90	9	54	20	0	5	73	1.04
7934317--7934360	12	3.6	12	84	9	54	20	2	6	70	1.21
7939990--7940049	29	2.1	29	84	6	77	66	0	8	25	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7940225--7940264	21	1.9	21	89	0	62	45	5	10	40	1.60
7940418--7940500	18	4.7	18	69	8	62	46	10	10	31	1.73
7940418--7940500	35	2.3	36	83	2	96	46	10	10	31	1.73
7942716--7942746	14	2.2	14	94	0	53	45	22	0	32	1.53
7942754--7942806	20	2.7	19	82	2	61	47	28	1	22	1.62
7942733--7942805	20	3.8	19	71	12	60	45	28	2	23	1.67
7942837--7942871	17	1.9	19	88	11	56	40	42	5	11	1.65
7944596--7944626	16	1.9	16	93	0	53	54	9	0	35	1.33
7944580--7944604	1	25.0	1	100	0	50	100	0	0	0	0.00
7944777--7944807	13	2.3	13	94	5	53	83	0	9	6	0.79
7949381--7949432	17	3.1	16	79	20	61	80	1	13	3	0.93
7949378--7949469	31	3.0	30	79	14	91	76	2	15	6	1.09
7949382--7949470	10	9.0	10	73	15	69	76	2	15	5	1.07
7949403--7949469	21	3.2	20	72	16	57	76	2	13	7	1.12
7949903--7949952	24	2.1	23	82	14	57	74	2	18	6	1.12
7951495--7951559	25	2.6	25	100	0	130	27	15	15	41	1.87
7951878--7952066	40	4.7	40	73	10	136	41	10	10	38	1.72
7951898--7952066	80	2.1	79	80	9	184	42	10	9	37	1.72
7952073--7952184	40	2.8	40	73	8	102	33	8	13	44	1.75
7952463--7952502	16	2.7	14	88	7	53	55	0	0	45	0.99
7952468--7952508	8	5.1	8	87	0	64	58	0	0	41	0.98
7952468--7952517	24	2.1	24	88	0	73	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7952683--7952964	83	3.4	83	78	4	293	30	14	18	36	1.91
7952691--7953065	166	2.2	167	78	4	373	30	16	17	35	1.92
7955078--7955138	27	2.3	27	85	0	77	24	26	13	36	1.92
7955426--7955474	23	2.0	25	84	7	66	6	12	2	79	0.99
7956880--7957172	60	4.9	61	85	5	361	34	9	5	50	1.58
7957982--7958019	17	2.2	17	95	0	67	73	0	5	21	1.02
7957999--7958103	27	3.8	28	80	8	117	63	1	3	30	1.22
7957987--7958031	19	2.5	19	85	7	58	68	2	2	26	1.12
7958260--7958301	10	4.2	10	90	0	66	0	2	9	88	0.61
7958317--7958446	43	3.2	40	77	14	122	39	19	13	27	1.89
7959434--7959472	9	4.3	9	83	0	51	10	7	0	82	0.86
7969869--7970017	57	2.5	61	84	8	195	33	9	5	51	1.57
7970503--7970577	10	7.3	11	75	14	54	69	1	2	26	1.10
7970503--7970546	14	3.2	14	80	3	54	72	0	2	25	0.96
7970501--7970616	27	4.2	28	82	7	141	63	1	5	29	1.25
7970501--7970648	54	2.8	55	75	12	155	67	1	4	27	1.16
7971667--7971716	22	2.3	22	71	21	52	36	6	10	48	1.61
7972021--7972099	38	2.1	38	95	0	140	30	13	22	32	1.93
7974877--7974967	6	16.8	5	74	19	60	72	0	4	23	1.02
7974877--7974935	15	3.9	15	79	20	68	74	0	5	20	1.00
7974830--7974953	46	2.7	46	78	13	114	70	0	7	21	1.10
7974888--7974967	17	4.8	16	76	18	67	72	0	3	23	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7974883--7974963	9	8.1	10	74	23	55	72	0	3	23	1.00
7974875--7974967	23	4.0	22	79	17	75	72	0	5	22	1.05
7974887--7974974	29	3.1	28	77	19	85	70	0	5	23	1.08
7975738--7975803	30	2.2	30	91	0	105	30	16	12	40	1.85
7978233--7978275	5	8.8	5	84	5	61	18	4	0	76	0.95
7978685--7978710	12	2.2	12	100	0	52	69	0	0	30	0.89
7980246--7980539	46	6.4	46	76	4	245	41	17	11	29	1.84
7980238--7980539	138	2.2	138	79	9	314	41	16	11	30	1.84
7980249--7980539	92	3.2	92	80	8	299	41	17	11	29	1.84
7981677--7981837	14	11.8	13	71	18	55	13	1	39	45	1.51
7981678--7981795	20	5.9	20	73	17	68	12	1	42	43	1.53
7981637--7981756	27	4.5	28	78	12	110	15	0	40	43	1.53
7981676--7981756	7	12.3	6	77	12	54	13	0	43	43	1.44
7981676--7981756	13	6.2	13	73	13	76	13	0	43	43	1.44
7981722--7981836	27	4.4	26	74	17	87	12	1	39	46	1.51
7982849--7982896	20	2.4	20	82	6	62	29	14	14	41	1.85
7998463--7998490	3	9.3	3	100	0	56	32	0	0	67	0.91
7998463--7998519	6	9.5	6	92	0	51	35	12	0	52	1.39
7999326--7999407	24	3.4	23	75	14	60	23	3	3	69	1.20
8003672--8003720	22	2.1	24	82	17	59	51	2	0	46	1.12
8004665--8005002	113	3.0	113	78	8	312	37	9	5	47	1.60
8005094--8005148	23	2.4	23	74	14	60	34	5	3	56	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8007464--8007503	21	1.9	21	90	10	64	37	17	2	42	1.63
8009563--8010047	201	2.4	200	80	5	543	42	10	12	35	1.77
8010908--8010983	39	1.9	39	91	0	125	42	17	11	28	1.84
8011636--8011871	120	2.0	120	90	3	379	51	11	0	36	1.42
8011668--8011912	120	2.1	119	80	8	266	54	13	1	31	1.46
8013051--8013111	8	7.6	8	72	7	52	77	1	3	18	0.99
8013051--8013116	16	4.3	15	81	9	71	77	1	3	18	0.98
8013219--8013270	25	2.2	24	86	6	70	78	1	7	11	1.02
8018544--8018617	13	5.8	12	76	12	60	75	4	5	14	1.13
8019031--8019078	10	4.8	10	82	7	53	39	25	0	35	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190