genome.fa.s223.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  27  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4570450--4570505	14	4.0	14	77	6	60	55	0	0	44	0.99
4570442--4570515	29	2.7	27	85	12	89	55	0	0	44	0.99
4570446--4570515	27	2.4	30	84	13	94	52	0	0	47	1.00
4570576--4570652	27	2.8	28	68	7	59	45	2	3	48	1.34
4570578--4570774	29	6.9	28	66	17	77	46	3	3	47	1.33
4570541--4570768	116	2.0	116	97	0	429	47	3	2	46	1.33
4570692--4570768	27	2.8	28	74	7	77	46	1	2	49	1.23
4571451--4571513	14	4.0	15	77	16	65	38	0	0	61	0.96
4571465--4571511	19	2.5	20	82	10	62	38	0	0	61	0.96
4571451--4571529	14	6.0	14	72	20	55	37	1	0	60	1.05
4571855--4571912	3	19.3	3	100	0	116	32	0	0	67	0.91
4573976--4574001	2	13.0	2	100	0	52	50	0	0	50	1.00
4575396--4575437	20	2.0	21	86	4	59	38	0	4	57	1.20
4583388--4583421	16	2.1	16	88	0	50	50	0	2	47	1.16
4584376--4584406	15	2.0	16	93	6	55	38	0	0	61	0.96
4584435--4584475	20	2.0	21	85	4	57	51	0	0	48	1.00
4589686--4589741	8	7.1	8	76	11	53	42	0	1	55	1.10
4589686--4589738	15	3.4	15	76	7	61	41	0	1	56	1.10
4589686--4589764	28	2.6	32	80	15	96	44	0	2	53	1.14
4589687--4589775	20	4.4	20	75	12	67	43	0	2	53	1.13
4590088--4590160	37	2.0	37	89	5	112	49	12	4	34	1.59
4590561--4590629	30	2.4	26	76	19	75	59	0	2	37	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4600442--4600475	14	2.4	14	85	0	50	55	0	5	38	1.24
4600597--4600662	26	2.5	26	79	13	82	45	0	6	48	1.27
4600756--4600884	23	5.5	23	72	20	99	42	0	0	56	1.04
4600797--4600862	31	2.1	33	86	11	93	42	0	1	56	1.08
4607716--4607760	2	22.5	2	90	0	63	46	0	4	48	1.22
4610715--4610759	19	2.3	19	81	11	56	82	8	6	2	0.93
4613551--4613597	24	1.9	25	86	4	69	53	0	2	44	1.12
4618658--4618717	20	3.1	19	77	15	52	60	3	0	36	1.14
4622180--4622210	16	1.9	16	93	0	53	35	0	19	45	1.51
4622344--4622394	25	2.0	25	82	14	61	43	3	7	45	1.51
4622890--4622946	26	2.2	26	84	6	71	59	7	1	31	1.34
4624849--4624911	12	5.2	12	75	9	65	69	7	0	22	1.13
4625443--4625490	23	2.1	23	85	14	64	52	2	0	45	1.12
4634420--4634494	38	2.0	38	92	5	125	41	2	8	48	1.47
4635118--4635142	7	3.6	7	100	0	50	12	12	0	76	1.04
4636567--4636643	20	3.8	20	74	8	68	37	0	0	62	0.96
4636630--4636667	20	2.0	18	90	10	58	47	0	0	52	1.00
4636708--4636792	32	2.7	32	76	7	91	58	5	0	35	1.22
4638360--4638526	3	57.7	3	77	7	139	31	4	4	59	1.37
4639257--4639327	31	2.2	33	85	9	94	25	1	2	70	1.09
4639256--4639327	14	5.2	14	72	11	60	25	1	2	70	1.08
4640682--4640722	14	2.9	14	80	20	50	17	4	7	70	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4641673--4641715	19	2.3	19	91	0	77	55	13	11	18	1.68
4642373--4642450	34	2.3	34	81	0	93	30	8	15	44	1.77
4646548--4646727	62	2.9	60	76	8	182	34	9	14	41	1.78
4646736--4646939	61	3.3	62	80	4	189	33	10	11	44	1.75
4646571--4646915	62	5.6	62	70	14	203	35	10	11	43	1.75
4646820--4646964	63	2.3	63	79	4	159	40	13	9	37	1.77
4647899--4647942	20	2.2	20	100	0	88	34	13	18	34	1.90
4648933--4649115	64	2.9	62	75	4	181	36	13	10	39	1.79
4650658--4650708	9	5.6	9	81	11	59	78	1	9	9	1.04
4651002--4651059	23	2.6	21	76	15	55	79	5	8	6	1.06
4652033--4652281	103	2.4	102	80	2	282	36	16	10	36	1.83
4652297--4652340	18	2.4	18	80	0	52	29	15	13	40	1.86
4653329--4653493	3	57.0	3	77	7	144	31	4	4	59	1.38
4654326--4654420	6	15.3	6	77	14	77	18	3	3	74	1.08
4654325--4654420	26	3.6	25	76	14	86	18	3	3	75	1.08
4654332--4654427	49	2.0	49	81	8	115	19	3	4	72	1.14
4654372--4654438	19	3.3	20	84	14	68	20	0	4	74	0.99
4654372--4654438	22	3.3	19	84	14	73	20	0	4	74	0.99
4656098--4656165	33	2.1	33	88	0	100	33	5	8	51	1.57
4656665--4656808	61	2.4	60	83	4	173	30	19	11	38	1.88
4661148--4661224	22	3.5	21	72	11	66	28	16	19	35	1.94
4661196--4661256	22	2.8	22	82	0	68	31	21	13	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4662590--4662619	15	2.0	15	93	0	51	23	0	20	56	1.42
4669991--4670059	24	2.8	26	72	20	67	59	0	0	40	0.97
4670004--4670077	32	2.3	33	79	9	80	58	0	0	41	0.98
4672822--4672928	53	2.0	53	96	0	196	30	9	8	51	1.64
4674165--4674210	18	2.4	20	86	13	62	19	8	0	71	1.11
4675753--4675868	60	1.9	60	92	0	196	34	10	14	40	1.80
4680414--4680456	20	2.1	21	83	12	54	51	4	2	41	1.35
4680558--4680616	19	3.0	20	78	14	61	50	3	0	45	1.18
4680858--4680905	12	4.0	12	76	17	55	35	2	0	62	1.07
4681117--4681162	19	2.4	19	81	0	65	36	6	2	54	1.39
4684051--4684246	3	70.0	3	66	23	56	31	2	6	60	1.35
4684051--4684250	23	8.9	24	71	18	98	31	2	6	60	1.34
4684066--4684115	16	3.0	17	85	8	59	20	0	8	72	1.10
4684120--4684249	5	24.8	5	75	12	109	36	2	5	56	1.35
4684051--4684249	10	17.8	11	69	15	90	31	2	6	60	1.34
4685087--4685179	26	3.8	22	75	22	64	24	3	1	70	1.08
4685087--4685176	35	2.6	34	80	8	92	24	3	1	71	1.08
4685128--4685200	29	2.6	28	78	14	87	30	5	1	63	1.26
4685129--4685218	29	3.1	27	73	16	74	35	3	1	60	1.21
4685470--4685517	25	1.9	25	87	8	71	52	6	0	41	1.27
4692744--4692784	18	2.2	20	82	8	50	7	29	0	63	1.21
4693638--4693663	12	2.2	12	100	0	52	42	11	0	46	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4694569--4694623	28	2.0	29	82	13	71	63	0	1	34	1.05
4695167--4695208	16	2.5	17	82	14	52	54	0	4	40	1.21
4695800--4695837	18	2.1	18	90	0	58	68	0	2	28	1.03
4695805--4695864	18	2.9	21	83	11	63	63	0	0	36	0.95
4704851--4704939	44	2.1	42	89	4	133	44	17	17	19	1.86
4709806--4709830	9	2.8	9	100	0	50	24	0	0	76	0.80
4710776--4710806	5	6.2	5	92	0	53	22	3	19	54	1.58
4710810--4710870	12	4.6	14	78	15	58	59	0	0	40	0.98
4711411--4711448	19	2.0	20	89	5	60	44	0	0	55	0.99
4711414--4711466	25	2.0	28	85	10	76	41	0	1	56	1.10
4712713--4712741	10	2.9	10	100	0	58	41	0	0	58	0.98
4714849--4715017	91	1.9	91	85	7	236	47	6	23	23	1.74
4718193--4718223	11	2.8	11	90	0	53	22	0	25	51	1.48
4718824--4718905	31	2.6	31	88	0	128	29	18	25	26	1.98
4719277--4719433	52	3.0	52	87	3	219	40	8	24	26	1.84
4721984--4722009	2	13.0	2	100	0	52	50	0	50	0	1.00
4724143--4724178	2	18.0	2	88	11	56	47	0	2	50	1.15
4731880--4731978	52	1.9	52	95	0	180	53	12	6	28	1.61
4732486--4732528	2	21.5	2	95	0	77	51	2	46	0	1.13
4732478--4732528	12	4.2	12	94	0	75	52	3	43	0	1.19
4741945--4741991	18	2.6	18	82	0	58	38	21	27	12	1.90
4742701--4743665	482	2.0	482	99	0	1912	26	14	22	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4747951--4747989	18	2.2	18	86	9	53	38	5	23	33	1.77
4748270--4748338	18	3.9	17	71	17	52	43	14	17	24	1.86
4748107--4750706	186	14.3	184	73	11	1262	38	15	22	24	1.92
4748642--4748710	18	3.8	18	66	7	50	44	13	17	24	1.84
4748006--4750708	372	7.4	372	80	7	2369	38	15	22	24	1.92
4748643--4749447	87	8.6	95	68	15	389	39	14	21	24	1.91
4749386--4749454	18	3.8	18	68	11	52	46	7	17	28	1.75
4749747--4749786	18	2.2	18	86	8	55	47	15	22	15	1.82
4750267--4750335	18	3.8	18	65	14	52	42	14	18	24	1.88
4750481--4750520	18	2.2	18	86	8	55	47	15	22	15	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190