genome.fa.s223.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  77  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12554266--12554318	26	2.0	26	92	0	88	28	26	16	28	1.97
12555118--12555171	27	2.0	27	96	3	101	27	25	20	25	1.99
12556007--12556057	25	2.0	25	92	7	86	27	23	21	27	1.99
12557825--12557877	26	2.0	26	92	0	88	28	26	20	24	1.99
12554378--12566671	901	13.7	898	83	5	13425	25	24	23	25	2.00
12559631--12559683	26	2.0	26	92	0	88	28	22	20	28	1.99
12560532--12560584	26	2.0	26	96	0	97	28	24	20	26	1.99
12561421--12561473	26	2.0	26	85	7	72	26	24	20	28	1.99
12562317--12562369	26	2.0	26	88	0	79	33	26	15	24	1.95
12563239--12563289	26	2.0	26	96	0	93	29	25	17	27	1.98
12564132--12564182	26	2.0	26	96	0	93	29	25	17	27	1.98
12565005--12565055	26	2.0	26	92	0	84	29	23	17	29	1.97
12565898--12565950	26	2.0	26	88	0	79	26	20	20	32	1.98
12566756--12566787	11	2.9	11	100	0	64	18	25	37	18	1.94
12567143--12567195	26	2.0	26	96	0	97	28	22	18	30	1.98
12566988--12570536	912	3.9	905	84	5	4278	26	24	23	25	2.00
12569835--12569911	26	3.0	26	92	0	118	27	25	19	27	1.99
12570723--12570773	26	2.0	26	88	0	75	29	17	21	31	1.96
12571625--12571675	26	2.0	26	84	7	68	31	17	23	27	1.97
12573211--12573263	26	2.0	26	92	0	88	28	24	18	28	1.98
12574935--12574987	26	2.0	26	92	0	88	33	24	15	26	1.95
12575819--12575868	26	1.9	26	95	0	91	30	28	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12574067--12581082	892	7.9	893	86	4	9140	25	24	24	25	2.00
12578490--12578545	26	2.2	26	90	0	85	32	23	17	26	1.97
12579191--12579215	12	2.1	12	100	0	50	0	56	36	8	1.29
12579393--12579443	26	2.0	26	96	0	93	27	27	17	27	1.98
12574067--12581082	900	7.9	900	86	4	8679	25	24	24	25	2.00
12581418--12582470	531	2.0	533	89	2	1605	28	26	22	22	1.99
12582436--12582486	26	2.0	26	92	0	84	29	27	15	27	1.96
12583340--12583392	26	2.0	26	89	7	81	26	24	20	28	1.99
12584244--12584296	26	2.0	26	92	7	90	30	26	15	28	1.96
12581952--12589154	905	8.1	901	85	4	9281	25	24	23	25	2.00
12585140--12585192	26	2.0	26	92	0	88	24	24	20	30	1.99
12586059--12586111	26	2.0	26	100	0	106	26	26	20	26	1.99
12586949--12587001	26	2.0	26	92	0	88	28	24	18	28	1.98
12589155--12589205	26	2.0	26	88	0	75	29	17	21	31	1.96
12590909--12590961	26	2.0	26	85	0	70	24	28	18	28	1.98
12590750--12591148	185	2.2	185	82	3	455	22	28	26	23	1.99
12591094--12591146	26	2.0	26	88	0	79	28	24	20	26	1.99
12592683--12592735	26	2.0	26	92	0	88	26	24	22	26	2.00
12593192--12593244	26	2.0	26	92	0	88	26	26	20	26	1.99
12594085--12594136	26	2.0	25	96	3	95	25	26	21	26	1.99
12594973--12595024	26	2.0	26	96	3	97	26	25	21	26	1.99
12593072--12595176	888	2.4	879	85	4	2746	25	24	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12596429--12596481	26	2.0	26	89	7	81	28	20	18	32	1.97
12597333--12597383	26	2.0	26	92	0	84	29	23	17	29	1.97
12598231--12598309	26	3.0	26	100	0	158	30	26	16	26	1.97
12599162--12599212	26	2.0	26	96	0	93	23	27	21	27	1.99
12595180--12600504	900	5.9	901	85	3	7006	25	25	23	25	2.00
12601182--12601233	25	2.0	26	96	3	97	26	17	26	28	1.97
12602825--12602877	26	2.0	26	85	0	70	30	18	20	30	1.97
12601207--12603419	902	2.5	899	89	2	3251	25	23	24	26	2.00
12603072--12603778	359	2.0	359	90	1	1132	25	17	23	33	1.96
12605825--12605877	26	2.0	26	100	0	106	26	20	26	26	1.99
12606706--12606758	26	2.0	26	92	0	88	30	20	22	26	1.98
12603430--12609283	881	6.6	879	83	6	6700	25	23	24	26	2.00
12607597--12607649	27	2.0	25	92	7	88	28	18	26	26	1.98
12608746--12609929	591	2.0	595	90	1	1883	26	22	23	27	1.99
12609971--12610023	26	2.0	26	96	0	97	32	20	20	26	1.98
12612464--12612515	26	2.0	26	100	0	104	26	15	26	30	1.96
12613361--12613420	26	2.4	26	83	5	79	26	21	23	28	1.99
12615165--12615217	26	2.0	26	96	0	97	28	20	24	26	1.99
12610852--12628529	902	19.8	901	85	4	21943	25	23	24	25	2.00
12616069--12616119	26	2.0	26	92	0	84	29	19	21	29	1.98
12616970--12617022	26	2.0	26	88	0	79	30	16	24	28	1.97
12618814--12618872	29	2.0	29	100	0	118	27	20	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12619694--12619746	26	2.0	26	96	0	97	26	18	26	28	1.98
12618887--12628309	901	10.6	901	86	3	12067	25	24	24	25	2.00
12621494--12621546	26	2.0	26	96	0	97	26	18	26	28	1.98
12622395--12622447	26	2.0	26	96	0	97	26	18	26	28	1.98
12624157--12624209	26	2.0	26	92	0	88	28	18	24	28	1.98
12625913--12625965	26	2.0	26	100	0	106	30	20	26	22	1.98
12626815--12626867	26	2.0	26	96	0	97	26	18	26	28	1.98
12627716--12627768	26	2.0	26	85	0	70	24	18	24	32	1.97
12630021--12630073	26	2.0	26	92	0	88	28	16	26	28	1.97
12630917--12630969	26	2.0	26	92	0	88	28	16	26	28	1.97
12629620--12637943	897	9.4	897	87	4	10557	25	23	24	25	2.00
12634416--12634468	26	2.0	26	96	0	97	28	20	24	26	1.99
12635298--12635350	26	2.0	26	96	0	97	28	20	24	26	1.99
12636184--12636236	26	2.0	26	89	7	81	28	15	26	30	1.96
12637092--12637142	26	2.0	26	100	0	102	29	15	27	27	1.96
12633821--12637943	886	4.6	897	86	4	5396	25	23	24	26	2.00
12637351--12638533	591	2.0	593	89	2	1806	26	22	22	28	1.99
12639212--12639430	118	1.8	119	88	2	334	24	29	26	19	1.98
12639411--12639489	26	3.0	26	92	0	131	30	18	24	26	1.98
12640356--12640418	27	2.3	27	84	10	85	25	23	23	26	2.00
12641255--12641307	26	2.0	26	96	0	97	28	20	24	26	1.99
12642152--12642204	26	2.0	26	92	0	88	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12643046--12643111	29	2.3	29	94	5	116	27	22	18	31	1.97
12643934--12643986	26	2.0	26	96	0	97	26	18	26	28	1.98
12645711--12645763	26	2.0	26	96	0	97	26	18	26	28	1.98
12646612--12646664	26	2.0	26	88	0	79	26	15	26	32	1.95
12647511--12647563	26	2.0	26	96	0	97	26	20	24	28	1.99
12650184--12650236	26	2.0	26	100	0	106	26	20	26	26	1.99
12644682--12651321	901	7.4	896	86	3	8631	25	24	24	25	2.00
12651086--12651141	26	2.2	26	93	0	94	28	17	23	30	1.97
12652642--12652694	26	2.0	26	92	0	88	30	20	24	24	1.99
12653545--12653597	26	2.0	26	96	0	97	28	16	24	30	1.97
12652030--12654597	891	2.9	890	87	4	3598	25	23	25	26	2.00
12654436--12654488	26	2.0	26	92	0	88	26	16	26	30	1.97
12654621--12654673	26	2.0	26	96	0	97	28	20	24	26	1.99
12654430--12654787	185	1.9	185	88	2	531	23	27	28	20	1.99
12655519--12655571	26	2.0	26	88	0	79	28	13	24	33	1.93
12654615--12657881	906	3.6	898	87	2	4543	24	24	25	26	2.00
12657327--12657379	26	2.0	26	89	7	81	26	22	22	28	1.99
12658097--12662269	902	4.8	852	82	7	4508	25	24	24	25	2.00
12661342--12661394	26	2.0	26	96	0	97	28	20	24	26	1.99
12663512--12663564	26	2.0	26	92	0	88	26	18	24	30	1.98
12662271--12665083	892	3.2	891	83	7	3135	25	23	24	26	2.00
12664382--12664434	26	2.0	26	88	0	79	28	16	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12664860--12665306	223	2.0	221	93	0	759	31	19	21	27	1.97
12665465--12665517	26	2.0	26	96	0	97	26	18	26	28	1.98
12666339--12666633	159	1.9	159	83	1	394	22	27	30	19	1.98
12669039--12669091	26	2.0	26	88	0	79	32	22	20	24	1.98
12669940--12669992	26	2.0	26	88	0	79	30	20	24	24	1.99
12670839--12670891	26	2.0	26	92	0	88	24	18	28	28	1.98
12671744--12671796	26	2.0	26	100	0	106	26	20	26	26	1.99
12671929--12671981	26	2.0	26	92	0	88	30	20	22	26	1.98
12671736--12672140	185	2.2	185	86	2	555	22	26	28	22	1.99
12674568--12674620	26	2.0	26	96	0	97	26	18	26	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190